Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------ZAT14                                       --------->ARR14(2)                                       --------->GLK1(2)                                 ------>ZmHOX2a(2)                                --------->CCA1(2)                                <------ZmHOX2a(2)                               <---------ARR14(2)                               --------->ARR11(3)                               --------->ARR14(2)                               --------->AGP1<---------ZAT18                               <---------ARR14(3)                                                 ---   <-----------RAV1(1)         <---------AGP1--------->ZAT14                       <------ZmHOX2a(1)   --------->ICU4              <---------ARR11(3)                                 <---------YAB1 ---- ------>ANAC58                --------->GLK1(1)                     <-------TEIL--------->YAB1   <--- ------>ANAC46      <---------ATHB12   <---------ARR14(2)          --------->CCA1(2)             <--- ------>ANAC58      --------->ICU4    <---------GLK1(2)           <---------ARR14(2)             ---- >At4g35610 --------->GLK1(2) <---------GLK1(1)   <---------ICU4  --------->ARR14(2) <---------GLK1(1)   aagcaatgttggataatccgaaatgatgctggagatctgagaatctgtgaactcatgacttctaagaagattcagaactgtatcaggattgcccttgttc  22975000                                                                                      <---------DAG2                                 <----------DOF2                                      ===============                               <---------ZAT2                                        <---------DAG2        <----------DOF2  --------->TOE1(2)                                        <-----------GT1 ------>ANAC46         <---------ARR14(2)                                  --------->DAG2 ----->HSFC1(1)        --------->ARR14(2)                                 ---------->DOF2 ------HSFB2a(2)       --------->GLK1(2)             ------->TEIL         --------->ZAT14        ---- ------HSFC1(1)       <---------GLK1(2)           <---------ATHB12        =========================== ----->HSFB2a(2)   <------ZmHOX2a(2)         --------->ANAC46          ----------->GT1<----------DOF2   tcgaaactgactttcatcgagatcgattctgcgagctttgaagctaaacccaatgaatcaacgaggtaagagacagtaaagttgttaccttttcgactat  22975100                 --------->At4g35610                 <---------At4g35610              <---------At4g35610         --------->TGA1a         ===========================MYC_MYB                                                    ------    <---------At4g35610  ----------->RAV1(1)                                                   ------ ---------->DOF2----------->RAV1(1)                                                            ------ ==================bZIP_DOF                      --------->MYB52(1)                        <--------- ==================bZIP_DOF XXXXXXXXXXXXXXXXXXX>MIR156G                                 --------->ZAT14 ----->ZAT6   --------->At4g35610          ----------->GT1                              ---------->DOF2 ==================bZIP_DOF ------->GAMYB ----------->GT1            ---------->DOF2--------->ZAT6  <   ctctaaagctcacatcagcagcagtagcaacagaagagaatgaattggaaaaaacagagaatacattttgcaaaagcttcactgaaacactaaagtcacg  22975200                   --------->TOE2(3)                   <---------DAG2                 ------>MYB83    <---------HSFB2a(2)    --------->HSFB2a(2) <---------At5g28300   <-----------------AGL2   <-----------------AGL1 --->ANAC46      -------->P                                                                         - --->ANAC58      ------>MYB46(1)                                                 <---------ANAC58   - --->ANAC58    --------->MYB46(3)               <---------ANAC55(2)              <---------ANAC58   - --HVH21       <---------MYB59   <---------ARR14(2)                 ----------->HVH21               - ----------DOF2--------->AtMYB61<------ZmHOX2a(1)                  <---------WOX13(1)        <-------TEIL   ccctttctgaaactggaccaaccttttaccatgaggaactagagaagaacacatgactataccaatgcgattgacagacaaatgcttgaaacaggttcga  22975300                              ------>ZmHOX2a(2)                                       <--------------                             <------ZmHOX2a(2)                                        ---------------                            <---------ARR11(3)                                       <---------------              <---------HSFB2a(2)                                                    ----------------              --------->HSFB2a(2)                                                  --------->GLK1(1)       <---------AHL20(2)   <---------ARR14(2)                                 --------->HSFB2a(2)       --------->AHL20(2)   <-----------ARR10            <---------ANAC58      <---------HSFC1(1) ----->MYB83  <---------HSFC1(1)  --------->ZAT2         <---------ANAC58      --------->HSFC1(1) ----->MYB46(1)             --------->ARR14(2)           <---------ANAC46      <---------HSFB2a(2) -------->ANAC58           <------ZmHOX2a(1)          --------->ALFIN1    <---------ZAT6     -------- -------->ANAC58       --------->MYB52(1)     <-------TEIL         ------>ZmHOX2a(2) <---------------   ccaagctatttaaattcgagaaaactacaggatccaagcttacaaatatacatcgagtggcgagagtgatcgatgagtgttcgagaaacccaaaatggca  22975400                                                                                      ----------->GT1                                                                                  ------>MYB46(1)                                                                                --------->AtMYB61                                                                          --------------->AtSPL8  --------->YAB1                                                         ---------->DOF2    <-------- -AGL15                                                            <---------ICU4 --------->MYB52(1) >AGL15                                                         --------->TOE2(3) ------>MYB83 --AGL1                                 ----------->GT1      --------->ARR14(2) <---------MYB59 ->AGL2                      *TSS      <---------TOE2(3)     <---------ARR14(2) <---------MYB46(2) --->GT1                    ----------->GT1                 --------->GLK1(1)   --------->MYB46(3)  < --AG                     ---------->DOF2                   <---------GLK1(1)   <---------MYB111(1) -   aaaatcaaaatttgagggggagaaggaagaaagaaaaaactagggtttaatggtttatgagcaaatccctaattacaaagtaccaaaccggtttatttta  22975500                                                                            --------->AHL20(2)                                                                            --------->AHL20(1)                                                                            <---------AHL20(2)                                                                           --------->YAB1                       ----------->GT1                                    <---------ATHB12                     >>>>>>>>>ARR2                                        <---------ATHB51  <--------                     <------------CBF                          --------->ATHB51             ---------      --------->AHL20(1)                                       --------->ATHB12             <--------      --------->AHL20(2)                       <----------DOF2 -------->ATHB1<---------YAB1 ---------      <---------AHL20(2)                   <---------ZAT18    <---------YAB1<---------AHL20(1)     --------->AHL20(2)<---------MYB46(3) <---------ANAC46  --------------->AGL15           --------- -YAB1<---------AHL20(1)      <---------AHL20(2)            <---------------AGL15          --------->GLK1(2) -------TEIL         >>>>>>>>>ARR1      --------->ALFIN1   <-----------------AGL3     --------->DAG2 ----------->CBF   <---------YAB1     <-------GAMYB        <-----------------AGL2 --------->YAB1   gattcaattttattttggtatacgattgttaatttatgtgagttgtgggctttcagtcatttctattattggtccaattataattcataagggaagctgg  22975600                                    <---------WRKY18(1)                                   ----------->HVH21       <---------ANAC55(2)        <---------WOX13(1)                                            <----       --------->ANAC46          <---------ANAC58                                               -----       --------->ANAC58          <---------AtLEC2                                            ------>MYB46(1)  <---------ATHB12       --------->ARR11(3)  <---------GLK1(1)                             --------->TOE2(3) -At4g35610     <---------ZAT18  <---------ANAC46                       ---------->DOF2    <---------MYB59 >At4g35610     --------->ZAT18  <---------ANAC58                ------------------------>ANAC81<---- -ZAT2 --------->ANAC58<---------TOE2(3)     --------->GLK1(1) ---------->DOF2     --------->DAG2 -->RAV1(2)---------->DOF2  <---------MYB46(3)           <-----------RAV1(1)      ---------->DOF2<--- >ZAT2 --------->ANAC55(2)  <-----------RAV1(1)         <---------TOE2(3)    ----------->GT1 ------>MYB83   gccaatcttacgcaaaagcccacttaagatttgttgcttgacgaagggtttccagttttatgttgcaaaggaaacaaagaagtaaaaagttaacctaatt  22975700                                                                                ------->MYC4                                                                                <-------MYC3        ------>NtERF2                                                           <-------MYC2        <---------RAP2.6(3)                                                     ------->MYC2      ---------->ID1                                                     --------->ANAC58     *TSS                                                                --------->ANAC46    <-----------GT1    <---------ARR11(3)      --------->TOE2(3)         --------->ANAC58 -----AHL20(2)         <---------ARR14(2)    <---------ARR11(3)         <---------LBD16 ---->AHL20(2)         --------->ARR14(2)    --------->ARR11(3)       <---------REM1(2) -----AHL20(1)         --------->GLK1(2)    <---------GLK1(2)      <---------AHL20(2)  --------->At4g35610 ------AHL20(2)        --------->ARR11(3)--------->ANAC46<---------CCA1(2)      ------->MYC3     ----   ttttttttgccgtcttagatttgaaaatctacagaagccctacacaaaatctcaattccatctctctatttatacacggacatgtgctcagaagaaataa  22975800                                                      ---------->DOF2                   ------>ZmHOX2a(2)             <------ZmHOX2a(2)                  <------ZmHOX2a(2)             --------->ARR11(3)                 --------->ARR14(2)             <---------ARR11(3)                                 --                 ------->TEIL           --------->TOE2(3)                                          --         ---------->DOF2              <---------ARR11(3)                                       <-----     --------->TOE2(3)                --------->ARR11(3)       --------->YAB1            <---------TOE2(3) ------>DOF2     <---------ARR14(2)   --------->GLK1(2) ----------->GT1    <----------DOF2<---------REM1(1)   aaagaaaacttaaaagatggatccaaaacagaagaaacaaaatcttagaagatcaaaaaagaaaatcacaagtcgttctttatcaaatattgatgtagga  22975900  Previous    Next  AGI:  At1g62150.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT1G62085.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40592.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 22973694    to: 22975429    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g62160.1    Description:  pseudogene, serpin (serine protease inhibitor), putative, similar to protein zx (Hordeum vulgare subsp. vulgare) GI:19071, serpin (Hordeum vulgare subsp. vulgare) CAA64599.1 GI:1197577; contains Pfam profile PF00079: Serpin (serine protease inhibitor); blastp match of 53% identity and 4.6e-51 P-value to GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein {Citrus x paradisi} Range:  from: 22975705    to: 22976967    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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