Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->RAP2.3(1)                                                         <---------ATERF1(1)                                                        --------->ALFIN1                                                 <-----------RAV1(1)            >>>>>>>>>>WRKY26 ---------DOF2                            --------->ARR11(3)     --------->AHL20(2) ---ANAC58                                <---------ARR11(3)------>NtERF2    <-------GAMYB ---ANAC58<----------DOF2       ------->TEIL------>ZmHOX2a(2)<------NtERF2   <---------At4g35610 ->HVH21<---------YAB1      --------------->AtSPL8      <---------DEAR3(1) <-----------RAV1(2)     --   gcttgtagtcatctttgagagaccgcctagtatgtactcgatttgatcttcatgtgggatggcgccataaattagtgccagttgatcaaaactagtagtg  16504400                                                                    <---------ANAC58                                                                    <---------ANAC46                                                                 <---------MYB52(1)                                                              ------>ZmHOX2a(2)                                                             <------ZmHOX2a(2)                                                            ------->TEIL                                                            <---------ARR14(2)                                                            --------->ARR14(2)                                                            --------->GLK1(2)                                                            <---------AGP1                                                           <---------CCA1(2)                                                         --------->ANAC46                                                         --------->ANAC58                <------MYB46(1)                                                         --------->ANAC58  --------->ETT(2)                                                         --------->ANAC55(1)             <------MYB83               <---------YAB1                           <---------LBD16    --------->ZAT18             --------->YAB1                 ----------------------->TaNAC69(2)  <---------ZAT2     <<<<<<<ZML2                     >>>>>>>>>>>>>>>>>LFY--------->ANAC55(2)    --------->ZAT2  --------->HSFB2a(2)        <------ZmHOX2a(2)        <---------REM1(2)    <---------ZAT14  <---------HSFB2a(2)       --------->ARR11(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------------------->WRI1  <---------ANAC58   <--------P <-- ---->NtERF2<-------TEIL    <---------ARR11(3) --------->ATHB12<-----------RAV1(1)    <-------GAMYB <   aggcctagaacatattcatcaatggaactagatcatttcttccattgtttgatttgttcacggatctgttgcttgtgtccacagctagggttggcataag  16504500                 <---------ARR11(3)                 --------->ARR11(3)                 <---------ARR14(2)                 --------->ARR14(2)             ----------------->AGL1                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             ----------------->AGL2 <---------ANAC58            ------->GAMYB           --------->ANAC46         <---------ANAC46         ----------->RAV1(1)           --------->ANAC58         <---------ANAC58       --------->LBD16           --------->ANAC58    <---------MYB46(3)          XXXXXXXXXXXXXXXXXXXX>MIR391         <-----------GT1      <---------AtMYB61           --------->ANAC46           <---------ZAT14 <---------DOF5.7(2)          --------->ALFIN1            --------->ANAC58 --------->DEAR3(1) ---------HVH21  <---------ARR11(1)<---------ZAT2         --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---------WRKY12<---------CCA1(2)<--------P       ----------->GT1      <---------ABI4(2)--------->At5g28300   tgtcaacgattttacgccatatctggacagaggtggtagcttggaacaagagaggttgaaccgcaacagagatagcaccgatgaggctacagtaaatgag  16504600                                                                                     --------->MYB46(3)                                                                                   ------>MYB83                                                                                 <---------MYB59                                                                              <---------WRKY18(1)                                                                             --------->WRKY38(1)                                                                             --------->WRKY12                                                                             ----------->HVH21                                                                             --------->WRKY45                                                                        <---------ARR11(3)         <-                                                                       <---------GLK1(2)           --                                                                      <------MYB46(1)--------->HSFB2a(1)                                                                      <---------HSFC1(2)          ---                                                                      <------MYB83 ------>MYB46(1)---                                              <xxxxxxxxxxxxxxxxsmallRNA(i) <----------DOF2        ---                              --------->ARR14(2)                      --------->HSFB2a(1)         <--                            --------->LBD16 --------->ANAC58          <---------HSFB2a(1)        ----                          <---------LBD16   --------->ANAC58          <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              --------->LBD16 <---------ARR14(2)                     <---------TOE1(2)          -----             --------->HSFB2a(2)            --------->ANAC46        <-----------RAV1(2)     ---------             <---------HSFB2a(2)          --------->MYB52(1)        <---------ANAC46 <---------HSFC1(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ATHB12<-------TEIL--------->HSFC1(2)    ------>ZmHOX2a(1)     ----------------->AGL1 --------->AtLEC2  <------NtERF2-------->ZAP1   <----  ----------->RAV1(2)   <---------SPL7    <---------DOF5.7(2) <---------AtMYB61 --------------->AtSPL8   tttatcctggcacttccagagtttgtagtccggattgggagaggtaacgccatggacagtgattgtggtggcaggttctttgaccgaaccatctacgtag  16504700     <-----------HVH21     <---------ARR11(3) --------RAP2.6(3) ---->NtERF2 ------>RAP2.6(2)                                                    <----------DOF2 ------>DEAR3(1)--------------->AGL15                    <-------GAMYB   ----------->HVH21 -------->HVH21 --------->MYB46(3)                      --------->MYB52(2) -------ETT(1)------->TEIL                     <------ZmHOX2a(1)   --------->ZAT2 ----->DEAR3(2)--------->ANAC46             <-----------RAV1(2)    <---------At4g35610 ---->At4g35610--------->ANAC58      <---------At4g35610<---------MYB46(3) >ANAC46 --------->At4g35610  ------->TEIL----------->RAV1(1)      --------->At4g35610          <---- -----At4g35610--------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<---------ZAT2<------ZmHOX2a(1)<--   ccgacaaggtcatatgcacccaatagagcatgaacttgaagatgccacaggagaaagtttgttgttgtcagctttgtgacataggacatgttcacattga  16504800                                                          ----------->TGA1                                                        --------->YAB1                    <------NtERF2                      <---------YAB1                   ------>NtERF2                     --------->GLK1(1)                            <--                  <---------bZIP60(1)               <---------ARR14(2)                            ---                 --------->RAP2.6(3)                --------->ARR14(2)                         <-----      --------->ALFIN1----------->RAV1(1)     *TSS--------->LBD16                              ------ -----TOE2(3)  ----------->TGA1<---------ANAC46 <---------LBD16                      ---------->DOF2 ----ZmHOX2a(1)----------->HVH21      ---------->DOF2--------->CCA1(2)         --------->REM1(2) ----   ggagagaggtggaatcgatgacggcaacaatttctgtggagaaagacatagccggatatgatgacgcttgaagaacaagcttgtagagaaagaaggggat  16504900                               <---------ANAC46                              <------NtERF2                             <---------ORA47(2)                             <---------DEAR4(2)                             <---------RAP2.3(1)                             <---------ERF1                             ------>NtERF2                            <---------RAP2.3(3)    ------------------------>ANAC81    >>>>>>>>>TBF1           <---------RAP2.6(2)        --------->MYB59               <xxxxxxxxxxxxxxx -------HSFB2a(2)           <---------RAP2.3(2)   --------->AHL20(2)      --------->ZAT14  <---------At4g35610 ------>HSFB2a(2)          --------->ATERF1(1)   --------->AHL20(1)       <---------ZAT14  --------->At4g35610 ----ARR14(2)              <---------ABI4(1)     <---------AHL20(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --->ARR14(2)----------->GT1<---------DEAR3(1)   <---------ARR11(3)  xxxxxxxxxxxxxxxx>smallRNA(i) -->ZmHOX2a(2)     ---------->DOF2<----------DOF2--------->ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   cgagaagaagaagagaggtagaaaagagaggcggcgttttttgtttttaaaaatatttaggtctatatagaatcactgctctgataccatgtaatctgag  16505000                       ----------->GT1                 <---------YAB1                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   <---------AHL20(1)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                    <xxxxxxxxxxx               --------->YAB1                                                       ------>ZmHOX2a(1)              <---------YAB1                                                       --------->TOE2(3)              --------->ICU4<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------CCA1(2)            --------->YAB1  --------->REM1(1)                                --------->AHL20(2)           <---------YAB1 <-----------GT1                              --------->YAB1    --------->ARR11(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->ANAC46   --------->YAB1 <-------- xxxxxxxsmallRNA(i2)------->TEIL     <---------------AtSPL8         <---------ICU4 --------->TOE1(3)   agtgaattgtcttattatgatgaatgtgttacaacatatatagtacttagtctagggtttacacaactactaatgacaattatatccttaatatatacaa  16505100                                                            <---------AHL20(2)                                                            --------->AHL20(2)  <--------------------                                                            <---------YAB1  <----------DOF2                                                --------->MYB46(3)     <-----------GT1      ---------                                            <------ZmHOX2a(2)       --------------->AtSPL8  <-------- xxxxxxxxxsmallRNA(se3)  <---------YAB1    --------->ARR11(3)    --------->ATHB12      <----------DOF2 ---GT1          <----------DOF2           <---------ARR11(3)   <---------AHL20(2)  <-----------GT1<-   cttcttatattccaaacctctttggttttgatagaagcacaagaagatcaacaaataggcatataattcatttgtactcttttttttttcttttctttga  16505200 <-----------GT1 ----ANAC81                       --------->DAG2       --------->ATHB12 ------------>WRI1     ---------->DOF2                <---------YAB1 --DOF2 <---------ATHB12 ----------->GT1  <-----------GT1                                    -------- --------AHL20(2) ---------->DOF2---------->DOF2   <---------YAB1                      --------->ALFIN1   ttttatcccaatgagttttccaaagaaaagtttaataaagcaaataactcattatgttgattaggctcaagagaaattcgaccattgaagtggaagggtc  16505300  Previous    Next  AGI:  At1g43724.1    Description:  transposable element gene. copia-like retrotransposon family, has a 3.1e-61 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 16503983    to: 16504846    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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