Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <---------ANAC58                                                                           <-------TEIL                                                                          --------->ALFIN1                                                                        <---------ANAC46                                                                        <---------ANAC58                                                                        <---------ANAC58                                                                      <---------ZAT14                                                                  --------->LBD16                      --------->LBD16                           ------>ZmHOX2a(2)                     <---------ANAC58                          --------->CCA1(2)                     <---------ANAC58                          <------ZmHOX2a(2)                     <---------ANAC46                         <---------ARR11(3)                    <---------LBD16                           <---------ARR14(2)                 <---------GLK1(1)                            --------->AGP1<---------ANAC58                 --------->GLK1(1)            <---------ZAT14 --------->ARR11(3)           --------->AHL20(2)                 --------->ZAT14 --------->ARR14(2) ------MYB83---------->DOF2      <---------YAB1      --------->AHL20(2) <---------At4g35610 ------MYB46(1) --------->ARR11(3)           --------->ALFIN1<---------GLK1(1) --------AtMYB61<---------ARR11(3)<XXXXXXXXXXXXXXXXXXXXMIR408--------->GLK1(1)   gttggtttagcaataaaagatttccgtagagactcatgagagaggcagtgtagcattatatagagatccgagtgaggtgcttctgtctaagttaagcgtc  9614100                                                                       --------->ALFIN1                                                             <---------YAB1                      <---                            --------->GLK1(2)                <---------ANAC46                    ----                --------->ARR14(2)                           <---------ANAC55(2)                 ----                <---------ARR14(2)          --------->HSFB2a(2)       --------->HSFC1(2)    ---------                <---------GLK1(2)       --------->ZAT14   --------->GLK1(2)               --------->YAB1         ---------->DOF2   <---------GLK1(2)<---------HSFB2a(2)       <---------HSFC1(2) <---------YAB1   tcatgtatgaccaaagtggattctctcgagattcttggtctctgttctcgatagagagagattatgtatagaagtgtcccattcacatgttataatacta  9614200                      <---------HSFB2a(2)                      --------->HSFB2a(2)                <---------TOE2(3)                     <---------LBD16                     <---------TOE1(3)   <----------DOF2 <---------ARR14(2)                   ---------->DOF2 ------At4g35610   --------->ARR14(2)              ----------->GT1                             <----- ----->At4g35610   --------->ARR11(3)       <---------------AGL15                            -------- ----->ZAT2       <---------CCA1(2)         <----------DOF2                                  <------- >ZAT6            <---------GLK1(1)         --------------->AGL15 <---------YAB1             --------   gctgactttatatcgtttgtatatctggaatctatgtttttggtttctttaaaaagtttaaagttgttttgattttgactaattctctcattgttaagta  9614300                                                                                                  <--                                                                                                  ---                                                                                             <-------                                                                                             --------                                                                                           --------->ANAC58                                                                                           --------->ANAC55(2)                                                                                           ----------                                                                                           --------->ANAC58 <------MYB46(1)                                                                           <---------ANAC55(2) <------MYB83                 --------->REM1(2)                   <---------YAB1     ------>ZmHOX2a(2) ----AHL20(2)          <------MYB83                          <---------YAB1         <------ZmHOX2a(2) --->GT1               <------MYB46(1)                     --------->YAB1          --------->MYB52(1) --ANAC55(2)          --------->MYB59                      <---------ICU4          --------->ARR14(2) ->ANAC55(2)      <----------DOF2 <---------ANAC46        <---------ATHB12         <---------ARR14(2)   atttggtttttgatgaagtgctattaggtctgtgttgagttgagacttgagacgaacacaatcatcatatgatcaagcttataccgatcggataagtaat  9614400                                                                                          --------->GLK1(2)                                                                                         --------->ARR14(2)                                                                                         <---------GLK1(2)                                                                                         <---------ARR14(2)                                                                                       --------->LBD16                                                                                     <---------LBD16                     ------>MYB46(1)                                               --------->MYB52(1)          --------->AHL20(2)                  --------->WRKY18(1)                  ------>MYB46(1) ---------GT1        ------>MYB83            <-----------HVH21   <------MYB83      ------>MYB83 ------>MYB52(1)  --------->ANAC46      <-----------GT1          <------MYB46(1) <---------MYB59 --AHL20(2)     --------->REM1(1) ----------->GT1             <---------MYB52(1) --------->AtMYB61 ->AHL20(2)<-----------GT1        ------>ZmHOX2a(2)      <---------ARR14(2) --------->HSFB2a(2)     - ->GT1 --------->WOX13(1)        <------ZmHOX2a(2)       --------->ARR14(2) <---------HSFB2a(2)    --   taaccggttcaattaactacacctagcttataccgatcgtataaaccggtcaagaaccaaaaccgcttggtttccattctagaccaaaccggattctagt  9614500             <----------DOF2          --------->ARR11(3)                           ------>ZmHOX2a(2)          <-----------GT1                             <------ZmHOX2a(2)          <---------ARR11(3)                         --------->ARR11(3)        <---------YAB1                               --------->ARR14(2)      <---------ICU4                                 <---------ARR11(3)      --------->YAB1                                 <---------ARR14(2)     --------->ICU4                               <------ZmHOX2a(1)     <---------YAB1                              <---------At4g35610   <--------HAHB4                              <-----------RAV1(2)   --------->YAB1                        =====================HOX2a_HOX2a              --------->ZAT2   --------->ATHB51                      ====================HOX2a_HOX2a               <---------ZAT2   <---------ICU4                        ------>ZmHOX2a(1)                            <---------ALFIN1  --------->ICU4                      *TSS   <-----------HVH21                       <---------ALFIN1  <---------YAB1                  --------->AHL20(2)--------->GLK1(1)               --------->LBD16-- -------------->AGL15             <---------AHL20(2)<---------GLK1(1)              --------->ANAC46-- --------------->AGL3         --------->AHL20(2)>>>>>>>GRF7                 <----------DOF2      ----   ttccattattattatcttttttatcggattaaaaatataaatccttatgtcaggagatcccattctctgtctctctgtctttctcccccaactcgcgaac  9614600                                                                        --------->AtMYB61                                                                        <---------ALFIN1                                                                       --------->MYB46(3)                                                                     ------>NtERF2                                                                     <---------ATERF1(1)                                                                    --------->DEAR3(1)                                                                    ----------->HVH21                                                                   --------->ATERF1(1)                                                                   --------->ORA47(2)                                                                   --------->RAP2.3(1)                                                                  <---------ATERF1(1)                                                                  <---------RAP2.6(1)                                                                  <---------RRTF1(1)                                                                  <---------ORA47(2)                                                                  <---------DEAR4(2)                                                                  ------>NtERF2                                                                  <---------RAP2.3(1)                                                                 <---------ATERF1(2)                                          ------>ZmHOX2a(1)      <---------RAP2.3(2)                                         <---------ALFIN1        --------->ATERF1(2)                                      <---------ARR14(2)         <---------RAP2.3(3)                                     --------->ZAT2              --------->DEAR3(1)    ------>ZmHOX2a(2)                                     --------->At4g35610        --------->ATERF1(1)   <------ZmHOX2a(2)                                     <---------ZAT2             <---------ABI4(1)     --------->GLK1(1)                                     <------NtERF2             <---------ATERF1(1)    <---------GLK1(1)                                     <---------At4g35610      <---------ATERF1(2)    --------->AGP1                                    <---------ATERF1(1)       --------->DEAR3(1)     <---------ARR11(3)            <------ZmHOX2a(2)   --------->ANAC58--------->At5g28300<------NtERF2     --------->ARR11(3)           --------->ARR11(3)   --------->ANAC58<---------MYB52(1)<---------ERF1     <---------AGP1           <---------ARR11(3)  --------->RAP2.6(3)            --------->ATERF1(2)    --------->ARR14(2) ------->ANAC58     <---------DEAR3(1)--------->ARR14(2)   <---------ALFIN1--------->MYB46(3)       < ------->ANAC58 --------->MYB46(3)<------NtERF2<---------DEAR3(2)<---------DEAR3(1)  <---------ARR14(2) ------>DOF2=====================================HOX2a_HOX2a --------->DEAR3(2)     <---------CCA1(2)   aaagcaaaccctagatcatccatcggcgagtgagacggcagctcctcgtcggtaattccttccaccggcggcgaccactcaccctcagatctctcaatcc  9614700                                                            <---------RAP2.3(2)                                                            --------->ANAC55(2)                 <----                        <----------DOF2                     <---------RAP2.6(2)                 -----                     --------->ANAC58                      <---------At5g28300      --------->AGP1                     --------->ANAC58                      <---------LBD16         <---------ZAT2                  <---------SPL7                      ------>ZmHOX2a(2)            <---------At4g35610              --------->GLK1(2)              <----------DOF2<---------ANAC55(2)    --------->ZAT2   <---------CCA1(2)<---------ZAT18 <----------DOF2 --------->ARR11(3)             --------->At4g35610 ---------ATHB12--------------->AtSPL8   ---------->ID1    --------->RAP2.6(3)------>NtERF2     -----   cactcatctctgtaacattctgtacgctttctctctctctttcttcgcttttgtgatctattacggctcggtctctgtgcctcccagctctattttggag  9614800                                <---------ANAC46                                <---------ANAC58                                <---------ANAC58                            <----------DOF2                            --------------------->WRI1  <----------DOF2             <-----------GT1 -----ZAT14            ---------->ID1              <---------DAG2                  <---------CCA1(2) ---->ZAT18      <---------AHL20(2)<------------------------ANAC81              <---------AHL20(2) ---->ZAT14 <------------------------ANAC81        <----------DOF2             --------->AHL20(2) ---   cactgcttcgtctctgtgtttatttggctcctttgtgtgtttctctatctctgcttttcttttgtattgctctgtttccgattttatatccatatgtctc  9614900                                                                         <---------DAG2                                                                       ------>NtERF2                                                                   ------>ZmHOX2a(2)                                                                  <---------GLK1(1)                                                                  <------ZmHOX2a(2)            --------->ARR11(3)                                    --------->GLK1(1)           <---------CCA1(2)                                     <-----------ARR10      <------MYB46(1)                                            --------->ARR11(3)      <------MYB83                        <------------CBF       <---------AGP1   ------------>CBF      ----------->GT1                 <-----------GT1  <---------At4g35610   <---------CCA1(2)     <-  --------->MYB52(2)              <----------DOF2      --------->At4g35610<----------DOF2         <-- -------->GT1                  ---------->ID1    ------------>CBF<---------ARR11(3)          --------   tggttatttggttatatctatgtgtgattctttgttcttttttccattgaattcaatagctgactaagatctctgccttttatcttcaatagttgctcaa  9615000  Previous    Next  AGI:  At1g27630.1    Description:  CYCT1;3; cyclin-dependent protein kinase. Identical to Cyclin-T1-3 (CYCT1-3) [Arabidopsis Thaliana] (GB:Q8LBC0;GB:Q9SFZ4;GB:Q9SFZ5;GB:Q9SXC3); similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61109.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Transcription regulator cyclin (InterPro:IPR015429); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro:IPR011028) Range:  from: 9611090    to: 9614323    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g27640.1    Description:  unknown protein Range:  from: 9614450    to: 9614893    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g27650.1    Description:  ATU2AF35A; RNA binding. similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.1); similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66301.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145) Range:  from: 9614538    to: 9616344    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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