Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------ZAT18                                         --------->At4g35610                              ------>ZmHOX2a(2)     --------->At4g35610                            <---------ARR11(3)      <---------At4g35610                          ----              <---------HSFC1(2)         <---------At4g35610                                   ------              --------->HSFC1(2)     --------->ANAC46              ----------->RAV1(1)    --------->MYB46(3)   ttgttatcacatcggaaacttcatccccttgatctatacaagtagctcacattcagcgaaacgaagagccaacaaaatcgaaacaaaaatcaacaaatac  9099300                                                                                         --------->At4g35610                                                                                      <---------At4g35610                                                                                  <---------ARR14(2)                                                                                  --------->ARR14(2)                                                                                 <---------HSFC1(2)                                                                                 --------->ZAT2                                                                                 --------->At4g35610                                                                                 --------->HSFB2a(1)                                                                                 <---------HSFB2a(1)                                         --------->At4g35610                    <-----------ARR10   <                                         <---------At4g35610                <---------HSFB2a(2)    --                                     <-----------HVH21                      --------->HSFB2a(2)    <-                                 --------->ANAC58                           <---------HSFC1(1)    <--                                 --------->ANAC58                       <---------ARR14(2)     <-----        ---------->DOF2       --------->WRKY18(1)                   --------->ANAC46 <---------ALFIN1      <------ZmHOX2a(1)      <-----------HVH21          <---------ATHB12--------->ARR14(2)    ------- ----->TOE2(3)         --------->At4g35610 <---------ZAT18     <---------MYB52(1)--------->HSFC1(2)<- --->ARR11(3)          <---------At4g35610 --------->ZAT14    <-----------HVH21 ----------->ARR10----   cttgatcaggaaaagcttggaatgtagcagaggtcaagccttcagcgaactctctcaaatcatccgttacaccgaattcgagaagctccgcttctgaacc  9099400           --------->PCF5   ----------->HVH21   ------>ZmHOX2a(1)                                                                  <---------At4g35610 ------>ZmHOX2a(2)                                                               <----------DOF2 ----------->RAV1(2)                                  ------>ZmHOX2a(2)       ------>NtERF2 ------ZmHOX2a(2)                                    <---------At4g35610     --------->DEAR3(1) ------->ARR14(2)                                   <---------ARR11(3)      ------>NtERF2 --------ARR14(2)                                   --------->ARR14(2)      --------->RAP2.3(1) -------ARR14(1)        --------->YAB1           --------->HSFB2a(2)        --------->ATERF1(1)     < ----LBD16<-----------HVH21                      <---------HSFB2a(2)        <------NtERF2 <---------ARR14(2) >TEIL <---------LBD16  --------->AHL20(2)      <---------LBD16            <---------ATERF1(1)------>NtERF2 --------GLK1(2) --------->PCF5    <------ZmHOX2a(2)<---------AGP1        <---------DEAR3(1)------>ZmHOX2a(2) ----->LBD16 <---------LBD16   --------->At4g35610  <---------ARR14(2) <---------At4g35610--------->ARR14(2)   ggatcctgacccggtcccggtcccgattatatcagcgatcgatttgatgttctggatctgatcagcttgtttcagcgcggcgactttgaactgatccgcc  9099500                                                           ------>NtERF2                                                           --------->RAP2.6(2)                                                          <---------DEAR3(1)                                                          --------->ATERF1(2)                                                          <---------ATERF1(2)               <--------                                                         --------->At4g35610           <---------HSFB2a(1)                                                         <---------LBD16               --------->HSFB2a(1)                   <---------ARR14(2)                --------->ARR14(2)                <---------HSFC1(2)            --------->ZAT2                        ------->GAMYB                        --------->ZAT2            <---------ZAT2   <---------GLK1(1)   --------->ANAC58                      --------->HSFC1(2)            --------->At4g35610              --------->At4g35610                       <---------ZAT2            <---------At4g35610              <---------At4g35610             <----------DOF2---------          <-----------RAV1(2)--------->GLK1(1)   --------->ANAC58          --------->At4g35610 ----------DOF2    --------->ARR14(2)       --------->ANAC46<------NtERF2  <---------At4g35610   ttctttgaagcttcagcagcgaattctttggatttcttagccgtttcagcaacgaaatcggcggcattgaattgatcagctttcttcgaagcttcgagag  9099600                                                        --------->ATHB12          --------->GLK1(1)   <---------bZIP60(1) <------NtERF2          <---------GLK1(1)   --------->bZIP60(1)--------->LBD16      <---------TOE1(2)      ----------->STF1   <------NtERF2     --------------------->WRI1    <---------WOX13(1)<------ZmHOX2a(1)    <---------ANAC58       ----------->HVH21    <---------ANAC46    <---------ANAC58       ----------->TGA1    <------NtERF2                         --------->ANAC46    <---------ANAC46      <-----------HVH21    <---------LBD16                    -------->P<-------- -HSFB2a(2)      --------->At4g35610        <-----------HVH21<---------ZAT6      <-----------GT1 >HSFB2a(2)      <---------At4g35610  <---------TOE2(3)<---------YAB1----------->RAV1(2)<----------DOF2   cgagttccttggatttcttagcagtctcggtgacgagattgacgaaggtcgcggaggatgattgtgttatcgtctgagacttcttacccgcttcttctgc  9099700                         ------>ZmHOX2a(1)                       ------>ZmHOX2a(2)                     <---------ARR14(2)                     <---------ARR11(3)                     <---------GLK1(2)                     --------->ARR11(3)                     --------->AGP1        ---------->ID1<------ZmHOX2a(2)           <----------DOF2                   <----------DOF2      <-----------GT1--------->ARR14(2)        <-----------GT1               <---------GLK1(2) -At4g35610        ----------->ARR10     *TSS <<<<<<<<<<GT-3b           <-----------GT1   gaacgattttgccctcttccatagatcctccattgctgcgactactatttttcttttcttctccgatttgttttatacagtttcttctttggcaaaatgc  9099800                                 <---------YAB1                               <---------ICU4                               -------->HAHB4                              --------->ICU4                            --------->ATHB51                                        ------>MYB46(1)                            <--------HAHB4                                          -------->P                            <---------ICU4                                          =================                            -------->HAHB4                                          ------>MYB83                            --------->YAB1                                      ------->TEIL                            <--------ATHB1                 <---------YAB1    --------->ANAC46                           --------->AHL20(2)         <---------ICU4         --------->ANAC55(2)                           <---------ATHB51           --------->YAB1         --------->ANAC58                           --------->ICU4            --------->ICU4          <---------ANAC55(2)                           <---------YAB1            <---------ATHB51        --------->ANAC58                           <---------ATHB12          <---------ATHB12   <---------CCA1(2)               ------------>CBF--------->YAB1  --------->ZAT18        ------>ZmHOX2a(2) =============   <---------YAB1        --------->YAB1--------->ZAT18<--------ATHB1 <------ZmHOX2a(2)  ---------->DOF2   caagtattatgggcttaaacaatgaactaataattatgaagcccacaagggcccaataattctcatttccgatcgtatcacgcacctacatgaagcaaat  9099900                                                                                          ---------->DOF2                                                                                       --------->ANAC58                                                                                       --------->ANAC58                 --------->ANAC55(2)                                              <---------WRKY18(1)                 <---------ANAC55(2)                                              >>>>>>>>>>WRKY62                 <---------TGA1a                                                  >>>>>>>>>>WRKY40               <-----------GT1 <---------YAB1                                    --------->WRKY12             <-----------HVH21--------->AHL20(2)                                 --------->WRKY38(1)     --------->MYB52(1) ----------->RAV1(1)                                      --------->WRKY45 ==========================MYC_MYB        <-----------GT1        <---------TOE2(3)>>>>>>>>>>WRKY18 ==========================bZIP_DOF<-----------GT1      <-----------GT1        <----------DOF2      <   ggagaagaaaccgaatgtcacgttcccaacatttttatttctattttcaattcaaaatttaccttctaaggctgtgatttactttgaccaagtaaagttc  9100000                                           ---------->DOF2                                       <---------ANAC46                                <---------AHL20(2)                                    --------->DAG2     ---------->DOF2         <---------ARR11(3)                              <---------YAB1   <---------YAB1            --------->AHL20(1)                           <------ZmHOX2a(2) --------->YAB1              --------->ARR11(3)                   --------->ICU4    ---------->DOF2 ---------ATHB12<-------TEIL <---------AHL20(1)         <-----------GT1  --------->ARR11(3)   aaatcatcaaagactaaattcgtattacaaatattttttttgtgtgaaagaaatcaaattacaatgtaacgatgagatcaatatagaaaaggtttgaaca  9100100                                                                --------->AHL20(1)                                                                --------->ARR11(3)                                                                <---------AHL20(1)                                                    --------->LBD16                                                   --------->LBD16                                                   --------->ANAC46                                                  --------->HSFB2a(2)         ---------->DOF2                                         --------->ATHB12      --------->CCA1(2)                                         <---------ICU4       --------->ARR11(3)   <---------ANAC58                                     <---------AHL20(2)       <---------ARR11(3)   <---------ANAC58                               <-----------GT1    <---------HSFB2a(2)    ----------->GT1    <----------DOF2         <---------ICU4        --------->LBD16    <---------AHL20(2)            <-   acaattctttctagctctctcagtccccaaatattacatttattcattgctccccgaaatacaagatatattgaattggaaaaaggcttgatcatgttga  9100200  Previous    Next  AGI:  At1g26300.1    Description:  BSD domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69030.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73547.1); contains InterPro domain BSD (InterPro:IPR005607) Range:  from: 9095887    to: 9099741    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g26310.1    Description:  CAL (CAULIFLOWER); DNA binding / transcription factor. Identical to Transcription factor CAULIFLOWER (CAL) [Arabidopsis Thaliana] (GB:Q9SBH2;GB:Q9SBH3;GB:Q9SBH4;GB:Q9SBH5;GB:Q9SBH6); similar to AP1 (APETALA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G69120.1); similar to DNA binding protein [Brassica rapa var. communis] (GB:AAS67303.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 9100140    to: 9103590    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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