Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <------NtERF2                                              --------->ABI4(1)                                              ------>NtERF2                                             --------->RAP2.3(3)                                             --------->RRTF1(2)                                             --------->RAP2.3(2)                                             --------->DEAR3(1)                                             <---------DEAR3(1)                                             --------->RRTF1(3)                                            --------->ORA47(2)                                            --------->ATERF1(1)                                            <------NtERF2                                            --------->RAP2.6(1)                                            --------->RRTF1(1)                                            --------->DEAR3(2)                                            --------->RAP2.3(1)                                            --------->DEAR4(2)                                           <---------RAP2.3(1)                                           <---------RRTF1(1)                                           <---------ATERF1(1)                                          <---------ANAC58                                          <---------RAP2.3(2)                                      <---------GLK1(1)            --------->ANAC58          <-------GAMYB            --------->ANAC46          <---------At4g35610            --------->ANAC58          --------->At4g35610        -------->P                   --------->MYB52(2)       ------->GAMYB             ------>ZmHOX2a(2)      <---------MYB46(2)         <---------LBD16      --------->MYB46(3)        <------ZmHOX2a(2)      <---------MYB111(2)      <---------ARR14(2)     <---------At4g35610       --------->TGA2(2) -------ARR11(3)               --------->ARR14(2)     --------->At4g35610      <-----------HVH21 ------>GLK1(2)              --------->LBD16--------->ERF1       --------->At4g35610 ------>ARR14(2)            --------->LBD16------>NtERF2       ---------->CDC5--------->ANAC46 -------ARR14(2)           ----------------->AGL1 <---------MYB52(1)          --------->bZIP60(2) ------GLK1(2)             <---------LBD16<---------ANAC58  <---------At4g35610<-----------TGA1   aatcttcaactacctcgccaataccaagtcccggatcgggagttgcgccgccgttttgctgaagctcatcggcattttcaacgtcatccatttcttcgtt  7623700                                                                         ------->GAMYB                                                                 <------NtERF2                                                                 --------->RAP2.3(1)                                                                ------>NtERF2                                                                --------->LBD16                                                                <---------ATERF1(1)                                                                --------->ABI4(1)                                                               <---------DEAR3(1)                                                               --------->RAP2.3(3)                                                               --------->RAP2.3(2)                                                               --------->ATERF1(2)                                           ------>ZmHOX2a(1)   --------->DEAR3(1)                                        ------>ZmHOX2a(1)      <---------ATERF1(2)                                 <---------ARR11(1)           --------->RAP2.3(1)                                 <---------ARR11(3)           --------->ERF1                                 <-----------ARR10            --------->ATERF1(1)                                 <---------ARR14(2)           --------->DEAR4(2)                                 --------->ARR14(2)          <---------ATERF1(1)                                <---------CCA1(2)           --------->ANAC46             <---------DAG2                   ---------->ID1--------->ARR11(3)         <---------DEAR3(1)           <----------DOF2       <---------YAB1       ------>ZmHOX2a(1)              ------>ZmHOX2a(1) <---------ALFIN1   gttgttgttgttattctcttcgtcttcttcctccatatcttcctcctcttgtttcggtttcctcgccgccgataacccccctctcttcttccttttccat  7623800                                                      <---------HSFB2a(2)                                                      <---------HSFC1(1)       <-----------RAV1(1)                                                      --------->HSFB2a(2)  <------ZmHOX2a(2)                            --------->DAG2        <---------GLK1(2)--------->ZAT6                      ----------->GT1             --------->ARR14(2)      --------->ARR11(3)                   <---------GLK1(2)              <---------ARR14(2)      <---------ARR11(3)              ----------->RAV1(1)              --------->ANAC58    <---------ICU4             ----------->HVH21 ----------->GT1 --------->ANAC46   <---------ATHB12       <---------CCA1(2)   ---------->DOF2     --------->ANAC58 --------->ANAC46     <--------P   ttccctcttctatctgcgacagaattgtaaaaagtgtaattcaattcacacgaattctcgaaatacccatcactacgatctatgtgggtaagtcaaatcc  7623900                                                              <----------DOF2                                                        --------->ZAT2                                                        <---------At4g35610                                                        --------->At4g35610                                                        <---------ZAT2                       <-------  --------->AHL20(2)                                   --------->GLK1(2)        ----------->GT1  <---------AHL20(2)          ----------->GT1        <---------At4g35610       --------->CCA1(2) --------->AHL20(2)      ---------->DOF2     <-----------GT1<------NtERF2   <---------YAB1<---------TOE2(3)   caatttaaatttggattttgagagagataaagatgtgaaacagcaatttaccttcagaagctggcatttttgtggatgaagatagagaaatagaggtttt  7624000                                                                                                 ----                                                                                                 <---                          ----------->GT1                                       --------->ZAT2   <---                  --------->ANAC58                                              --------->At4g35610--                  --------->ANAC58               ---------->ID1                 <---------At4g35610--              --------->ANAC58           <----------DOF2                  --------->GLK1(1)      ----    <---------LBD16     <---------MYB52(1)   <----------DOF2              <---------GLK1(1)     -----   <---------ANAC46 <---------ARR11(3)  <---------ANAC58               <---------YAB1           ----- --ARR14(2)   --------->ANAC58          <---------ANAC58   ------>ZmHOX2a(1)    <---------ZAT2  -----   gggttctgtggaatcgaagcaagacccttagtaaaaagaattgctttctttgtcttctctcctccgagtcgttctgatttccagctctcgagctaaacac  7624100          --------->ANAC46          --------->ANAC58          --------->ANAC58   <----------DOF2                                                               --------->HSFB2a(2)  --------->TOE2(3)                                                       ------>MYB46(1) ----->AtMYB61                                                            ------>MYB83 ------MYB46(2)                                    --------->AHL20(2)     --------->MYB52(1) ------MYB111(1)                               --------->AHL20(1)       <---------MYB59 ---->MYB83                                    <---------AHL20(1)       <---------MYB46(2) ---->MYB46(1)                                 <---------ARR11(3)       --------->AtMYB61 ----->MYB46(3)          *TSS  --------->TOE2(3)  <---------AHL20(2) ------>NtERF2     --------->ANAC58 ---->ANAC58          <-----------GT1          --------->AHL20(2)   --------->DEAR3(1) --------->ANAC58 ---->ANAC46       <----------DOF2            ----------->TBP    --------->ANAC46<---------HSFB2a(2) ---->ANAC58    <---------ARR11(3) --------->TOE2(3)<---------AHL20(2)  <---------MYB111(1)         <   caaacctttttctcgcaatttctttcaccatttccttcattaatctctatatattaattcattctccacgacgacctaaccttctcgacaaacaagaggg  7624200                             ------>MYB83                             ------>MYB46(1)                            --------->WOX13(1)                           --------->AtMYB61                        <---------WRKY18(1)                     <----------DOF2                       --------->WRKY12                         <---------DAG2                       --------->WRKY45                     <---------WRKY12                       --------->WRKY38(1)             ---------->DOF2                    <---------ANAC46                   <---------DOF5.7(2)                <---------YAB1 ---------YAB1     <-------TEIL                     <-------GAMYB                 <-----------GT1   ttctgatttcgaaattcaagcttcgttgaccaatccaaattttggtttaacttcggttaaagtcaactttacttcggttttatttttcaattttgaatga  7624300                       <------MYB83                       <------MYB46(1)                      --------->MYB59             --------->ATHB51             --------->AHL20(2)                                                                   <--             <--------HAHB4                                                            --------->YAB1             -------->ATHB1                                                          *TSS      <-----             <---------AHL20(2)                                         <---------ETT(2)       <-----            <---------ATHB12                                            --------->ETT(2)    <--------            --------->ICU4                              <---------AHL20(2)       --------->ANAC58<---            <---------ATHB51                       ----------->GT1--------->TOE2(3) <----------DOF2 <          --------->WOX13(1)              ----------->GT1 <------------CBF       <---------ANAC46<---        <---------ATHB12               <------------CBF--------->AHL20(2)        --------->ANAC58----        ------------>CBF      ---------->DOF2  <-----------GT1  <-------TEIL <-----------HVH21 <-----   gaaaaaccgaatcaattatttagttcggttcttaaagttcaaattggttaaaccggtttaaattgatacattagtcgaccgtcgcgcattaatactggtg  7624400          <---------DOF5.7(2)        --------->DOF5.7(2)        <---------MYB52(1)       <-------GAMYB                                                                        <--------      <---------ANAC46                                                                     --------->DEAR3(1)   --------->ARR14(2)                                                                    --------->LBD16   <---------ARR14(2)                                                                    ------>NtERF2 --------->MYB55(2)                                                                     --------->DEAR3(1) <---------MYB46(3)                                                            <---------ALFIN1 -------ANAC46                                                                 --------->AtMYB61 ----ANAC58                                         --------->DEAR3(1)        --------->MYB46(3) ----ANAC58           <---------DEAR3(1)          --------->At4g35610      --------->MYB46(3)    <--- ---RAV1(1)         ------->GAMYB                 <---------At4g35610      <---------MYB55(2) ------- --------------------TaNAC69(2)            --------->REM1(1)         <-----------HVH21  --------->ANAC46 ---------AtMYB61--------->MYB52(1)       ------>MYB46(1)           --------->DREB2C(2)--------->ATERF1(1) ------AtMYB61--------->ANAC58            ------>MYB83<------NtERF2 --------->DEAR3(1) <---------LBD16 ----->ALFIN1 --------->ANAC46          <---------MYB59    ------>ZmHOX2a(2)--------->AtMYB61<------- ----ANAC46   --------->ANAC58  --------->ARR11(3)--------->ZAT2 <---------ALFIN1  <-----------HVH21   tggtggttccgttaacgagcaacggcgatgaagagacctcgacctacatctcagccgtcgatctcttccaccgtcaaaccaccactgtctccgccggtca  7624500                                                                           <---------ANAC58                                                                           ========================bZIP_DOF                                                                           ===============MYC_MYB                                                                           <---------TGA1a                                                                           <---------bZIP60(2)                                                                           <---------ANAC58                                                                           <---------O2                                                                         <---------TGA2(2)                                                                        ----------->HVH21           -                                                                        ----------->TGA1           <-                                                                      <---------At4g35610         ---                                                                      --------->At4g35610        <---                                                                      <---------ZAT2    <----------DOF2                                                                  --------->ANAC58      =============                                                                  --------->ANAC46 <---------MYB52(1)                                                                  --------->ANAC58 --------->DOF5.7(2)                                                                 <---------LBD16  <---------RAP2.6(3)                                                              <---------ALFIN1    <-------GAMYB <----                                                             ========================================                                                             ========================MYC_MYB    <----  <---------GLK1(2)                                          ------->GAMYB --------->O2 <---------DAG2  <---------ARR14(2)                                       ==========================MYC_MYB    -----  --------->ARR14(2)          <------ZmHOX2a(1)            ========================================== -DEAR3(2)            --------->ANAC46                     -------->P --------->ZAT2 <---------DOF5.7(2) ------ALFIN1   --------->At4g35610             ----------->GT1 <---------ALFIN1  =================== ---->HVH21    --------->ANAC58     --------->TOE2(3)     --------->MYB52(1) --------->DOF5.7(2)----- ----HVH21     --------->ANAC58  <---------ALFIN1       <---------MYB52(2)<---------TOE2(3)  --------   caccgattctcaaacagaagctacacagaacaggaacacctaaatggttcccgttaaaactaacccacacggagctgacgttgccgttaacttttccgac  7624600  Previous    Next  AGI:  At1g21700.1    Description:  ATSWI3C (Arabidopsis thaliana switching protein 3C); DNA binding. similar to CHB3 (Arabidopsis thaliana switch 3D), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G34430.3); similar to CHB3 (Arabidopsis thaliana switch 3D), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G34430.2); similar to CHB3 (Arabidopsis thaliana switch 3D), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G34430.4); similar to unnamed protein product [Vitis vinifera] (GB:CAO61898.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); c Range:  from: 7619990    to: 7624125    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g21710.1    Description:  OGG1 (8-oxoguanine-DNA glycosylase 1). similar to 8-oxoguanine DNA glycosylase [Populus nigra] (GB:BAF03495.1); contains InterPro domain 8-oxoguanine DNA glycosylase, N-terminal; (InterPro:IPR012904); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain Helix-hairpin-helix DNA-binding, class 1; (InterPro:IPR003583); contains InterPro domain Helix-hairpin-helix motif; (InterPro:IPR000445); contains InterPro domain HhH-GPD; (InterPro:IPR003265); contains InterPro domain Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal; (InterPro:IPR012294) Range:  from: 7624385    to: 7626105    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version