Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <---------At4g35610                                        --------->At4g35610                                   <---------LBD16                                 <---------ARR14(2)                     ---------->DOF2    <---------ZAT2                   ----------->HVH21    --------->ZAT2                 --------->ARR14(2)                 --------->ZAT2  --------->ARR14(2)                    <---------ARR14(2) ----ARR11(3)    <---------ZAT2  --------->GLK1(2)                     ------->TEIL --->ARR11(3)    --------->At4g35610 --------->LBD16              --------->MYB52(1)      <---------DAG2 ----GLK1(2)     <---------At4g35610--------->ANAC46      --------->YAB1      ----------->GT1   tttcagaaaacaaaattgcagctgaaagctaagagaatccgcagctgtaatcaaatccaactataactaaacgaatttggatgtaaaacccaatttttcg  2262500                                                                                                    <                                                                                                    -                                                                                                    =                                                                                                   ==                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                --------->ANAC46         --------->ANAC58        <---                    --------->TOE1(3)         <---------ALFIN1          ------->GAMYB           -----            --------->ANAC58      <-----------GT1   <---------------AGL15--------->ANAC58   ---------            --------->ANAC58   <---------ICU4--------->MYB46(3)        <XXXXXXXXXXXXXXXXXXXXMIR837-5P ------->TEIL       --------->TOE2(3)      <-----------GT1        --------->TOE2(3) ----------->GT1--   atgaatttgataacaagctaaaccctaaaaccatatttactaagttaaccactccaatatacagaaaacatcaacgagcaagagactggttaagagatga  2262600  --------->LBD16  ----------->GT1 <---------HSFB2a(2) --------->HSFB2a(2) ---------LBD16 ----->ZmHOX2a(2) =======================HOX2a_HOX2a =======================HOX2a_HOX2a ------->ARR14(1) -----ZmHOX2a(2)                                                                             -------- ------>AGP1--------->GLK1(2)                                                                <------- ------>ARR11(3)                                                                             -------- ------>ARR14(2)                                                                             -------- -------ARR14(2)                                                                             ======== ----->GLK1(1)   <------ZmHOX2a(1)                                                           -------- ------GLK1(1)<-----------RAV1(2)                                                   <---------YAB1 ------>ARR10<-------TEIL           --------->ANAC58                              <-----------GT1 >CCA1(2)   --------->CCA1(2)       --------->ANAC58                       <---------HSFB2a(2) ------ ------->CCA1(2)<---------At4g35610 --------->ANAC46      --------->ATHB12----------->GT1   <--------   gatccggaaataagattcaggagccattgaaacaaaacaagcaatagcaaaatccaagaatgtttgagagaaggaatcgagaaatcaccattcgcacgta  2262700                             <---------WOX13(1)                           --------->ATHB12                          <---------YAB1                        --------->At4g35610   <-----------HVH21    <---------At4g35610 <--------P           <-----------RAV1(2) ->ANAC58          <-------TEIL --TGA1a          --------->CCA1(2)                                         --------->ARR14(2) ->TGA1a          --------->ARR14(1)       --------->HSFB2a(1)              <---------ZAT14 ->ANAC46        --------->ARR11(1)        <---------ANAC58         ------>ZmHOX2a(2) =========MYC_MYB--------->ARR14(2)        <---------HSFB2a(1)    --------->ARR11(3) ->ANAC58        <---------GLK1(2)         <---------ANAC58       <---------ARR11(3) --->ALFIN1      <---------ARR14(2)--------->GLK1(1)        <----------DOF2 --------->ZAT14 -TOE1(2)      ----------->ARR10   <---------GLK1(1)--------->MYB46(3)      <---------ARR14(2)      -   ggggttgtcaccgagacaagattcgcagatgattgggaaatcggagcgttcccatccatcggcttcatgatctctcagtattctgtgagccattctctta  2262800                                                                                    <---------TOE1(2)                                                                                   --------->ANAC55(2)                                                                                   <---------ANAC58                                                                              <---------GLK1(2)                                       <------ZmHOX2a(1)                      --------->ARR14(2)                                  --------->ANAC58              ---------->DOF2    <---------ANAC46                                  --------->ANAC46     <-----------GT1        <---------ARR14(2)  ---                                  --------->ANAC58<---------ARR11(3)  <---------DEAR3(2)       <-----                           <---------HSFB2a(2)    --------->ARR11(3)  <------MYB46(1)        -------- ----->ZmHOX2a(1)      <---------CCA1(2)  --------->ATERF1(1)  *TSS   <------MYB83 <---------ANAC58   tcctctgattcgattagtcgatatcaaatctcgaacacgaaggagacgacgagattttaactagggcaaagtcggttttggattcgcgtgtttttgtctt  2262900                                                          <---------YAB1                               ------------>CBF           <---------AHL20(2)              <---------ICU4  <---------ICU4           --------->ZAT6              <----------DOF2                 --------->YAB1 ------>AHL20(2)        <----------DOF2        <---------DAG2<---------YAB1         <----------DOF2 -----DOF2       --------->TOE2(3)             <----------DOF2           <-----------GT1  --------->YAB1 -->ID1          --------->TOE1(3)           ------->TEIL --------->AHL20(2)------->GAMYB<---------YAB1   ttaaatattacaaataaaaccctaaactttcactacaattcgaaatgaacttttcttctttttattaatacaaattaaccctctaacttttataatgacc  2263000                                                 <---------ANAC58                                                 <---------ANAC46                                                 >>>>>>>>>>E2Fa                                  <------NtERF2  <---------ANAC58                                 <---------ATERF1(1)                                 <---------RAP2.6(3)                                 ------>NtERF2  <---------LBD16                   --------->LBD16                                --------->RAP2.6(2)                               ------>NtERF2                                <---------DEAR3(1)                               --------->ANAC58                                <---------ATERF1(2)                              --------->ANAC46                               --------->ATERF1(1)        ------>MYB46(1)        --------->ANAC58               --------->TOE2(3)--------->ATERF1(2)<------NtERF2                <---------LBD16   <-----------GT1             --------->RAP2.6(3)--------->LBD16           --------->GLK1(1)  ------  --------->RVE1(1)           ------>NtERF2 <------------CBF                <---------GLK1(1) -------  --------->CCA1(1)    --------->ATHB12   --------->ZAT18 ------>MYB83 ----------->GT1  ---------->DOF2   aaaaatatccatccaattcttaaaacgattgaggccggcactagcgcattggcgggaaccaaatagcttagaatggcgaaatcccgccagaaaagaaaaa  2263100                                      *TSS                                 <<<<<<<<<GATA-1                                   --------->ARR11(3)                                 <<<<<<<<<GATA-4                                   <---------ARR11(3)                               --------->WOX13(1)   --------->LBD16               --------->CCA1(1)                             ------------>CBF      --------->RAP2.6(2)<---------ZAT18                           <---------ZAT6     ---------->DOF2  <---------YAB1--------->YAB1  ----------->TBP<---------WRKY18(1)  <----------DOF2      <---------GLK1(2)<---------YAB1 --->DAG2       --------->WRKY12 <<<<<<<<<GATA-2   --------->ANAC46   --------->ZAT18              <- --->DOF2       ----------->HVH21<<<<<<<<<GATA-3  <---------LBD16     --------->ZAT14      <---------   gcttataaatcggactccttgaccttatagtgtcaatccactttccaaaatagccgcaaacgattctcattgtgaactctgataatatctaagacgacga  2263200                                                             ------>ZmHOX2a(2)                                                            --------->ARR14(1)                                                            --------->CCA1(2)                                                            <------ZmHOX2a(2)                                                           --------->ARR14(3)                                                           --------->AGP1                                                           <---------AGP1                                                           --------->ARR14(2)                                                      --------->YAB1                                                     <---------ATHB12                                            >>>>>>>ZML2---------->DOF2                                            <---------HSFC1(1)                                            --------->HSFC1(1)                                            --------->HSFB2a(2)    <---------DOF5.7(2)                                       --------->HSFB2a(1) <---------ARR11(3)          --------->ANAC55(2)          <---------HSFC1(2)  --------->ARR11(3)         <-------TEIL                  <---------HSFB2a(1) <---------ARR14(2)                <-------      --------->At4g35610              --------->HSFC1(2)  <---------ARR14(3)         --------->At4g35610 ----------RAV1(1)           <---------MYB46(3)    --------->WOX13(1)        <---------ARR14(2) -ID1 <---------At4g35610  <-------GAMYB    <---------HSFB2a(2)   <---------WRKY38(1) <---------At4g35610   aatgttggagctacgtcttgttcagggctcgttgttgaagaaggttctagaatcaatcaaagatctggtgaacgatgcgaatttcgactgctccagcact  2263300                                                          ------>ZmHOX2a(2)                                                         --------->ARR14(1)                                                         --------->CCA1(2)                <---------GLK1(2)                   <---------ARR14(2)                    <------ZmHOX2a(2)          ----------->RAV1(1)                   --------->ARR14(2)                   <---------ARR11(3)         ----------->HVH21           --------->ANAC58  <---------O2               --------->ARR14(2)     <---------At4g35610           --------->ANAC58  --------->O2               --------->ARR11(3)     --------->At4g35610      --------->ANAC58       <---------bZIP60(2)        <---------ARR14(2)  <---------ZAT14      --------->ANAC58       <---------TGA1a            --------->AGP1      --------->ZAT14--------->GLK1(2) --ALFIN1  --------->ANAC46  --------->TGA1a          ----------->ARR10 --------->ZAT6   <------ZmHOX2a(1)   gggttctcactccaagctatggattcgagtcacgttgctctggtgtctctcttgctaagatccgaaggcttcgaacactacagatgcgacaggaatctct  2263400  Previous    Next  AGI:  At1g07360.1    Description:  zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein. similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G29580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21518.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 2260387    to: 2262863    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g07370.1    Description:  PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor. Identical to Proliferating cellular nuclear antigen 1 (PCNA) [Arabidopsis Thaliana] (GB:Q9M7Q7;GB:A7UIK5;GB:Q9LNV6); similar to PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2), DNA binding / DNA polymerase processivity factor [Arabidopsis thaliana] (TAIR:AT2G29570.1); similar to Proliferating cell nuclear antigen (PCNA) (GB:Q43124); contains InterPro domain Proliferating cell nuclear antigen, PCNA; (InterPro:IPR000730) Range:  from: 2263138    to: 2264549    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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