Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          ----------->HVH21                                                       ------>ZmHOX2a(2)                                                      <------ZmHOX2a(2)                                                      --------->CCA1(2)                                             --------->ANAC58                                             --------->ANAC58                                      <---------------AGL15                                      ===============================================================                                     ----------------->AGL1                                     ----------------->AGL2                                    <------NtERF2    --------->AGP1        --------->MYB52(2)        <---------RAP2.6(2)--------->ARR14(2) -------TOE1(1)                   --------->ETT(1)   <---------ARR11(3) -------TOE2(1)                  --------->RAP2.6(3) <---------ARR14(2) ----->SPL7                     <-----------HVH21    --------->ARR11(3) --->TOE2(2) <------NtERF2     <-----------RAV1(1)  --------->GLK1(1) ----SPL7 ---------->ID1       --------->ALFIN1     <---------GLK1(1)                              <- --->TOE1(2)------>NtERF2  --------->At4g35610 ---------->DOF2          <---------YAB1             -- ------->AtSPL3         <------ZmHOX2a(2) <---------ATHB12  --------->AtMYB61  <---------ZAT14     <-   acgatgttgttcgtcgccattgttagatcagatgtgtcggccaaatcaagaaagagatccgaccttcacggtttgtgatagtatagggttcgatagtcat  26952000           <---------ICU4           --------->ATHB51           --------->ATHB12          <---------ATHB51          --------->ICU4          <---------YAB1        <---------------AGL15       ------------>ATHB5       <-----------------AGL3       ----------------->AGL3       ----------------->AGL2       ----------------->AGL1                  <--------HAHB4    <------MYB46(1)                            --------->YAB1    <------MYB83                               <---------ICU4     <---------AHL20(1)  <--------P                                   --------->ATHB12   --------->AHL20(1)  --------->ALFIN1                            <---------ATHB12    --------->AHL20(2) =======================MADS_MADS           --------->WOX13(1)    <---------AHL20(2) --------TOE1(3)                           ------------>ATHB5    <---------AHL20(2) ------->MYB59 ----------->GT1    --------->ARR11(3)             --------->AHL20(2) --------TOE2(3)   --------->YAB1 <-----------ARR10          <---------YAB1         ----------->GT1   ttaggttgggccataattggataataagcccagtagtatctaggcccaatcatttacatgtttataaataaattaagagaattagagagtaaatttggcc  26952100                                                                                         --------->At4g35610                                                                                       --------->ZAT18                                                                                      --------->ALFIN1                                                                                    <---------ANAC46                                                                                    <---------bZIP60(2)                                                                                    --------->TGA1a                                                                                    =================                                                                                    <---------ANAC58                                                                                    <---------ANAC58                                                                                    --------->O2                                                                                    <---------O2             <-----------GT1                                                     ----------->HVH21        <---------YAB1       --------->ZAT2                                      --------->WRKY12      <---------ICU4       <------ZmHOX2a(1)                                  *TSS  <---------TGA1a      --------->YAB1    <-----------RAV1(2)                                 ---------->DOF2     --------->ICU4   <-----------HVH21                                     ==================bZIP_DOF   --------->YAB1--------->ANAC58    ----------->HVH21                   ----------->GT1 <---------At4g35610  <---------YAB1 --------->ANAC58   <---------MYB59         <------ZmHOX2a(1)--------->DAG2   cagtataattatgtttaacaagcccatcaggagctaggcctaacatgtttataaaacaaataggagagaattagagggtaaagttgacgtgggctgattt  26952200                 <---------AHL20(1)                 --------->AHL20(1)              --------->AHL20(2)            <-----------TBP          <----------DOF2         --------->TOE2(3)         <---------DAG2      --------->ARR14(2)                                                                      <------    --------->LBD16                                                                          <-------   --------->ANAC46                                                                       --------->MYB46(3)   --------->ANAC58                                                                 --------->REM1(1)   --------->ANAC55(2)                                             --------->ANAC55(2)  --------->MYB52(1)   --------->ANAC55(1)                                         <-----------HVH21    --------->bZIP60(2)   --------->ANAC58                   --------->DAG2           <-----------TGA1   ----------->RAV1(1)   <---------ANAC55(2)      <---------ICU4                 --------->DAG2         <---------ALFIN1 ====================bZIP_DOF        ---------->DOF2      ---------->DOF2   --------------->AtSPL8   cgaacccgtaacctttttatatattagacctcattaccaaaaagcgattcgattatctcataaagcgtcatgtgtttttttgtgccacatcaacggctgt  26952300     --------->MYB52(2)   <--------P                                          <---------AHL20(2)   <---------MYB52(1)         <-------GAMYB            --------->AHL20(2) ----------->GT1        <-----------RAV1(2)           --------->AHL20(2)                          --- <---------MYB46(3) <-----------HVH21        <---------ANAC58                            --------->ICU4 ---MYB46(3)     ---------->DOF2        <------------CBF                              *TSS     <----- --DEAR3(1) ---------->DOF2  ----------->GT1 <---------ANAC58<---------ANAC46       ----------->GT1   gagtggttagtcactaaagaaaagtcacaggctgttatatagtattggcttcgctatttattttcgtctaccacgagaaaaacaagtcgtaattcttcta  26952400                                                                                      --------->ANAC58                                                                            --------->RAP2.6(3)                                                                           <---------ARR14(2)              ----------->RAV1(2)                                          --------->ARR14(2)             --------->ABI4(1)                                            <---------GLK1(1)          <---------At5g28300                                             --------->GLK1(1)      ----         <-----------GT1                                              <-----------------AG---------->DOF2    --------->ARR11(3) ------>ZmHOX2a(2)           ---------->DOF2    <-----------------AGL1     <---    <---------ARR11(3)<------ZmHOX2a(2)     --------->YAB1<---------HSFB2a(2)         --------->ANAC58   <---------GLK1(1) --------->ARR14(2)    <---------ATHB12  <------ZmHOX2a(1)      ---------->DOF2 <   <---------CCA1(2) <---------ARR14(2)   -------->P      --------->HSFB2a(2)     --------->ANAC58  - ------>YAB1 ------>NtERF2             =============================HOX2a_HOX2a   --------->ANAC58--- ----CCA1(2)--------->DEAR3(1)         <------ZmHOX2a(2) <-------TEIL ----------------->AGL1 --------   tcttgatatcttcaccgcctgccgatctctctcaatctccgatcaaccatgagcaaaggtccaggactcttcaccgatatcggcaagaaagccaaaggta  26952500                                                                              <---------ANAC46                                                                              <---------ANAC58                                                                              <---------ANAC58    --------->YAB1                                                        <---------ANAC58   <---------YAB1                                    <-------GAMYB        <---------ANAC58 <---------ICU4                                     --------->LBD16       <---------ANAC46 --------->YAB1                                   <---------LBD16    <---------ICU4 ----->ICU4                                     --------->GLK1(2)   --------->ICU4 ------YAB1                                    <---------GLK1(2)--------->LBD16                 ----- ---------YAB1                               <---------TOE2(3) --------->ANAC58  <---------ARR14(2) -------->ICU4                               <---------YAB1    --------->ANAC46  --------->ARR14(2) ------>YAB1                                 <---------TOE1(3) --------->ANAC58<----------DOF2<------ --->GT1 <---------CCA1(2)               --------->TOE2(3)    <---------LBD16<-------TEIL   ---------   taattatcatcgtatcgctcttcttctatattccttctctcatcgttaagattccggttgaaatcgcgcaattagtgcgtgcgtttatgcctgttcattg  26952600                                                                      <---------ANAC58                                                              <---------AHL20(1)     --------->ARR14(2)                                       <---------AHL20(2)     <---------ARR14(2)                                       --------->AHL20(1)     --------->ARR11(3)                              <---------GLK1(2)<---------ANAC58 ---->ATHB12                               --------->ICU4    --------->AHL20(2)           <---------At4g35610 ---WOX13(1)                         <---------WOX13(1)  <---------YAB1       ------>ZmHOX2a(1) >ATHB12                       ------>ZmHOX2a(1)     --------->ARR11(3)     ------>ZmHOX2a(2)   attcgaagttctggtgtttcgaatttgtttatcctgtagattgaaatgatttttagattttgattatattttgggtgatcctatcgagtttaagctgttt  26952700                                                                                         --------->ALFIN1                           --------->At4g35610                                           <------NtERF2                          <-----------RAV1(1)                                          <---------ANAC46                       <---------AGP1                                                  <---------ANAC58                       --------->AGP1                                                  <---------ANAC58                       --------->ARR11(3)                       --------->ARR11(3)   ------>NtERF2                       <---------ARR11(3)                       <---------ARR14(2) --------->ATERF1(1)                       <---------ARR14(2)                       <---------ARR11(3) <---------LBD16                       --------->ARR14(2)                       --------->ARR14(2) --------->SPL7                <----------DOF2                                 <-----------ARR10 <---------ATERF1(1)          ---------->ID1 ------>ZmHOX2a(2)                 --------->ZAT14        ------>NtERF2         <-----------GT1<------ZmHOX2a(2)           --------->YAB1        <---------At5g28300   <---------YAB1     <---------CCA1(2)            <------ZmHOX2a(2) <---------ALFIN1--------->LBD16<   ctgttttgatttttccttctttgtagatctgttgacgagagactacaattccgatcagaagttcagtatctccacttacagtgcctccggcgtggtatgt  26952800                                                             <---------MYB46(3)                   --------->ZAT14                           ----------->GT1         --------->AtLEC2                                 <---------ANAC58    <---------ARR14(2)  <---------AHL20(2)                                      <---------ANAC46 <---------ANAC46 --------->YAB1    <---------ZAT14                        <---------ANAC58 <---------ANAC58 ---------YAB1   --------------->AtSPL8            <----------DOF2         <---------ANAC58         >   ttattatatcgatgcaaactctgtactattttcagactcttgttcgatttcggttttaatgcgtggttaaatttgtggagtatcgttttgatattcgttt  26952900  Previous    Next  AGI:  At5g67488.1    Description:  other RNA Range:  from: 26951176    to: 26952093    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g67490.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO48511.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66554.1); similar to Os06g0157800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056861.1); contains InterPro domain Protein of unknown function DUF1674 (InterPro:IPR012875) Range:  from: 26951379    to: 26952178    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g67500.1    Description:  porin, putative. similar to porin, putative [Arabidopsis thaliana] (TAIR:AT3G49920.1); similar to porin-like protein [Brassica napus] (GB:AAW22622.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925) Range:  from: 26952386    to: 26954709    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version