Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------ANAC46                                           <---------ANAC55(2)                                           <---------ANAC58                                  <------NtERF2                                  --------->LBD16                                 --------->ANAC58        <-----------GT1                                 --------->ANAC58    <---------AHL20(1)                                <---------LBD16      --------->AHL20(2)                            ----------->ARR10        --------->AHL20(1)                       <---------YAB1      <---------ANAC58              --------->YAB1<---------------AtSPL8  <---------AHL20(2)                             <-              ----------->GT1   <-------TEIL    --------->ICU4                                    <--             <---------ATHB12 <---------SPL7<-----------TGA1                                    -----    --------->TOE2(3)  <-----------RAV1(1) --------->ANAC55(2)                           <----------DOF2   caaaaatgttaactaatcgtgaattatgttgaggtccgcaaaattgcgtcataaatattttactggtctctcttcatatttcttagcttcgcttgaattg  26950800                <---------DAG2                =====================================bZIP_DOF            <-----------GT1           <-----------GT1                  <-------MYC3       ==============================================bZIP_DOF       <----------DOF2                      ------->MYC3       <---------DAG2                      <---------TGA1a     --------->TOE2(3)  <-----------GT1                          --------->TGA1a   --------->GLK1(2) --------MYB46(3)    <-----------GT1       --------->O2    --------->KAN4(1)      ----------->GT1 -------WOX13(1)<----------DOF2            <---------O2    <---------KAN4(1)  >>>>>>>>>TBF1 ---->ATHB12---------->ID1          --------->YAB1        <---------KAN4(2)>>>>>>>>>TBF1     <-------   attgttacccttttttccctttttttctgtgtttactataatgccacgtttcttctatcgaataatctaaaacagaagaagaagaagtcaaaatgctttt  26950900           <---------ANAC46                                                           --------->YAB1           <---------ANAC58                                                        <---------AtLEC2     <---------ICU4                                     ------------------------>ANAC81 <---------YAB1    <---------YAB1                                   --------->ARR11(3)           <-------TEIL   <---------ARR11(3)                             --------->YAB1xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->ARR11(3)                       ----------->GT1    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-  --------->YAB1   <---------AHL20(2)     ---------->DOF2      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<--- ---DOF2   <---------ANAC58         ------>ZmHOX2a(2)<---------ARR11(3)      --------->AHL20(2)------   tatatgatcattttcttgtatttttttttagtttttgatcggagtaaagttataagaacttcaaaaaaaaaaaaaaaaaaaaaatgcatgatgatgccaa  26951000                                                                                            ---------                                                                                            ---------                                                                                          <----------                                                                                  --------->ANAC46                                                                     --------->AHL20(2) --------->AHL20(2)                                                                     <---------AHL20(2)--------->AHL20(2)                                                               --------->YAB1     --------->ANAC55(2)         <----------DOF2                                   <---------AHL20(2)    <---------LBD16 ---------DOF2                                       <---------RVE1(1)<---------AHL20(2)<---------AHL20(2) ------ATHB12                              <---------ANAC55(2) ----------->GT1 <---------ARR14(2) --->WOX13(1)---------->DOF2           --------->ARR11(3)  <---------YAB1      --------->ARR14(2)   tctttttctaacttttaaagagtattggaacataatacatatatcatgtaaactgatatttttaattgtaattttatatcatatacggatttaattgtaa  26951100                                                                              <---------bZIP60(1)                                                                            *TSS                                                   <-----------RAV1(1)   --------->TOE2(3)                      --------->YAB1    --------->ZAT18                  --------->TOE1(3)          -                    <------------CBF    <---------ZAT14                --------->ARR11(3)       -----                 <---------ZAT18        --------->ZAT14       ----------->RAV1(1)        ----------->HVH21 >YAB1           ------------>CBF       <---------ZAT18       --------->MYB52(1)   <---------At4g35610 -->GT1     <---------ZAT2    <---------YAB1   ------------>CBF  ------->GAMYB--------->bZIP60(1)   < --CBF      --------->ZAT2 --------->ICU4   <------------CBF --------->MYB46(3)    --------->At4g35610   tttgagcatcacccagttgtgcaattgtagttatcacagaagtgcacattgcaatgttgttgaacaacagaaataccttgacatcatctcactgacccat  26951200                                             <-----------HVH21            ----------->GT1                                      --------->LBD16                     --------->MYB46(2)                                    <---------LBD16                       --------->MYB52(2)                                   --------->MYB52(1)                <---------TOE1(2)                                  ------->GAMYB                     <-----------RAV1(2)                                 --------->MYB46(3)          --------->ZAT14    --------->AtLEC2             <---------MYB55(2)          <---------ZAT14                        - ----->NtERF2                  <-----------GT1      --------->TOE2(3)<---------TOE2(2)             -- ---->AtLEC2                <---------ANAC55(2)     --------->TOE1(3)<---------TOE1(3)             -- ---------RAP2.6(3)         --------->ANAC55(2)    ----------->RAV1(2)  <--------P   <---------CCA1(2)   gcagccatgcctaaacttggaccagaactcatgtaaccaccgggtaatgtcaaacctgaactctgaactctcaggttagttaaactcatctcttgttgtt  26951300                                                                                       <------ZmHOX2a(1)                                                                                 ----------->RAV1(2)                                                                                 <---------O2                                                                                 --------->TGA1a                                                                                 <---------TGA1a                                                                                 --------->ZAT2                                                                                 --------->O2                                                                                --------->MYB52(1)                                                                                -------->P               --------->ZAT6                                                   ------>MYB46(1)              <---------YAB1                                                    ------>MYB83  -------            <---------ICU4                                                    --------->MYB46(3)            --------->YAB1                                                    ------->GAMYB--------->ARR11(3)           <---------ATHB12                 <---------AHL20(2)                =============MYC_MYB ----->ZmHOX2a(1)                           --------->AHL20(1)             <-----------GT1 <---------ARR11(3) ------->TOE2(3)                            --------->AHL20(2)       ------->TEIL<---------ZAT2 ------->TOE1(3)              ---------->DOF2                      <-------TEIL<---------ALFIN1    <-   tccttaattctaaatcatcactaaacctgtattaaagtgtcccaaattttttagatagagatgtatagatgcacatttaacccacctgaggaagaactta  26951400    <---------YAB1   <------ZmHOX2a(2)       ---------->DOF2  --------------->AGL15                      --------->MYB52(1)  <---------------AGL15                  <---------------AGL15  <---------ICU4    <---------ARR11(3) ----------------->AGL3 <-----------------AGL2            <---------YAB1               --------->ARR11(3) ========================================================MADS_MADS <-----------------AGL3          --------->YAB1    --------->MYB52(1)                         ------- -->ICU4--------->HSFB2a(2)     --------->ICU4  --------->ANAC46<---------ARR11(3)            ------- ----------GT1      --------->ARR11(3) ------>ZmHOX2a(2)------->TEIL                         <-------   ttaactattactggaataacaagatcaccagagaatgatgatccaaataaaggcaacgaatttgaagttctactacattttcttccattttctccattat  26951500                                            --------->LBD16                                           --------->HSFB2a(2)                               <-----------GT1               --------->ANAC58                            <---------AHL20(2)          <----------ID1                           <---------AHL20(1)      --------->CCA1(2)                    ------>ZmHOX2a(1)       <---------ANAC55(2) <---------AHL20(2)     --------->AHL20(1)                ------->TEIL  <xx      <-------TEIL         --------->AHL20(2)     <---------AHL20(1)                <---------ARR14(2) -->AHL20(2)               --------->AHL20(1)    --------->AHL20(2)                 --------->ARR14(2) -->ATHB51               ------->TEIL      <---------HSFB2a(2)                <-------TEIL     ------ --MYB52(1)       ---------->DOF2         <---------LBD16    --------->ANAC58--------->CCA1(2) <-----   tttgcaaatacataaacacataaaacgaatttatttccatttttcccagaaatatataagaacaagctaaaacacagggatacatgaatcctctcagaaa  26951600                                       <------MYB46(1)                                       <------MYB83                                       <---------DEAR3(2)                               --------->SPL7          <---------ALFIN1    --------->SPL1(1)      --------->DEAR3(1)     <---------SPL7                               <---------ARR11(3)      --------->MYB46(3)--------->MYB46(3)<-------TEIL                    --------->ARR11(3) XXXXXXXXXXXXXXXXXXX>MIR3434*<---------SPL1(2)                            --------->ARR14(2)        < xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------MYB46(3)                 <---------ARR14(2)        - --->GLK1(1) ------->MYC3   --------->DEAR3(1)<------ZmHOX2a(1)           <-----------ARR10      ---- ----GLK1(1) <-------MYC3------->GAMYB<---------DEAR3(1)                 <---------CCA1(2)    <------   tcagagcatcgaccacgttgttcccaatcgccgtaccgagtcggttcaggacctctaggccctccaatctcaccagtatcttcgttcacaaactctccac  26951700  Previous    Next  AGI:  At5g67488.1    Description:  other RNA Range:  from: 26951176    to: 26952093    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g67490.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO48511.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66554.1); similar to Os06g0157800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056861.1); contains InterPro domain Protein of unknown function DUF1674 (InterPro:IPR012875) Range:  from: 26951379    to: 26952178    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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