Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->ANAC46                       <---------ALFIN1                   <------NtERF2                  <---------DEAR3(2)                                                               --                 <---------DEAR3(1)                                                               ---                 --------->ETT(1)     --------->ATHB12                                            <--             --------->ALFIN1         <---------ICU4                                      <--------ATHB1             <---------AtMYB61       <---------YAB1                                      <---------ATHB12      <----------DOF2----------->RAV1(1)                                     --------->YAB1--------->ARR11(3) -------->DAG2  <---------ORA47(1)   --------->ICU4         <----------DOF2 <---------YAB1--------->YAB1 -------->DOF2<---------MYB46(3)   --------->YAB1    <----------DOF2    <----------DOF2  --------->ICU4 --DOF2   <---------TOE2(3)   --------->At4g35610 <-----------GT1       <---------DAG2   <---------YAB1   ttaaagtggttttaggtggtcggcaacacatcatctctcatcattgtttttttttcttttctctttcaattgggctttatcatagagaacaatgattttg  26793800                                                                                             <-------                                                                                             --------         <---------YAB1                                                                     <--------      --------->ICU4                             --------->ICU4                            <---------At5g28300    ------->TEIL                             --------->At5g28300                          <---------- ------->CCA1(2)                            ----------->GT1                      <---------YAB1 ------>ARR14(2)                         --------->ARR14(2)                    <----------DOF2 -------ARR14(2)                         <---------ARR14(2)         <-----------RAV1(2)<----------DOF2   gatatgaacttattagtagtttcagcaatagtttagactttcgaatcggtaaatatcagtaacttagaactcaggctgaaactttgattcttttactgta  26793900                                                                                 ------>ZmHOX2a(2)                                                                         <---------YAB1                                                              --------->REM1(1)<---------ARR11(3)            <---------ALFIN1                                ============================HOX2a_HOX2a --------AGL15                   --------->WOX13(1)         ------>ZmHOX2a(1)  --------->ARR11(3) ------->AGL15      <---------ZAT18     <---------ZAT14<---------At4g35610 <---------ANAC58 ---------AGL3      --------->ZAT18     --------->ZAT14--------->At4g35610 <---------ANAC58 -GT1 <---------GLK1(2)        ------------>CBF      <--------P        <---------At4g35610          -   tttagctagattctacacttggtggactccatcagcaattacttcacagaccgaggtagctcctacaactctctgatgcttgatctcgttcaaatagatg  26794000                                                                                         --------->ARR14(2)                                                                                   <---------GLK1(2)                                                                                   <---------ARR14(2)            <----------DOF2                                                   <-------GAMYB        <---------ANAC58                                                     <-----------RAV1(1)        <---------ANAC58                                                     --------->MYB52(2)     <---------WOX13(1)                                                      --------->MYB55(2)    <------------CBF                                                     --------->MYB52(2)   --------->ATHB12                                                      <---------MYB46(3)   <---------ICU4                             <------ZmHOX2a(1)        <---------MYB52(1)<---------ARR14(2)   --------->ATHB51                     ---------->DOF2           --------->GLK1(2)--------->ARR14(2)  --------->ICU4                      <---------YAB1   ----------------->AGL3<---------MYB46(3)  <---------YAB1                  <----------DOF2      ----------------->AGL2--------->MYB111(2) -------->YAB1    <------------------------ANAC81      ==============================================   tctcataattgcttcttttttgtttttgtttttgggctttattaaagaggagtaaggcccattaagagaacccgtttgtttgttggattcggatttggca  26794100                                                                                                 <---                                                                                          <---------MYB55(2)                                                                                        ------>MYB83                                                                                        --------->ANAC46                                                                                        ------>MYB46(1)                              --------->LBD16                                         --------->AtMYB61                              ------>NtERF2                                           <---------MYB46(2)                             --------->ANAC58                                         --------->MYB46(3)                             --------->ANAC58                                  <---------At4g35610                             --------->ANAC46                  --------->TOE2(3)     --------->ANAC46                            <---------LBD16<-----------------AGL2              --------->At4g35610  <               <---------ANAC58            <-----------------AGL3              --------->ZAT2   -----               <---------ANAC58 <---------ALFIN1               --------->TOE1(3)   --------->REM1(1)<      <----------ID1     <-----------GT1   --------->TOE2(3)   <---------MYB59 <---------ZAT2   ----- ============================================================MADS_MADS  <---------MYB52(1)--------->MYB46(3)   aatggatagcgccaaaatcgtgtcgattttcccgccatctccatttcttaatctgggttcttaaacctaaatcagttactcagcttcaccaaaccaccaa  26794200                                                                          <---------ANAC46                                                                         <------NtERF2                                                                        <-----------HVH21                                                                       <---------DEAR3(1)                                                                       <---------ANAC46                                                                       <---------ANAC58                                                                      <------NtERF2                                                                      --------->ATERF1(1)                                                                     <---------ATERF1(1)                                                                    <---------DEAR3(1)       --------->GLK1(1)                                           --------->ATERF1(1)      <---------ARR14(2)                                           <------NtERF2      --------->ARR14(2)          <---------LBD16                --------->ALFIN1    --------->LBD16              --------->MYB52(1)              <----------CDC5  ----------------->AGL1   --------->ICU4                        <------NtERF2  <---------LBD16      <---------------------WRI1               <---------LBD16 ---------CBF         --------->LBD16 <---------ARR14(2)        ------>NtERF2       --------->ANAC58 ---------WRKY18(1)  <---------DEAR3(1)                        <---------ANAC46     --------->ANAC58 ->MYB83 ----------->GT1   <---------ATHB51                 <---------DEAR3(1)    ---------->DOF2 -----------GT1     <---------LBD16 ------->GAMYB         --------->DEAR3(1)     <------ZmHOX2a(1) ->MYB46(1)       <-----------HVH21--------->ANAC46 <---------ANAC55(2)<---------ANAC58  <---------ALFIN1   attgaccggatttgtaaaaatgtccggcgataattcaacggaaactggacgaagacgtagccgaggcgcggaggcgtcgagtaggaaagacacactcgag  26794300                                                  --------->ANAC58                                                  --------->ANAC58                                              <------MYB83                                              <---------DEAR3(2)                                              <------MYB46(1)                                             <---------MYB46(3)                                             --------->MYB111(1)                                             <---------------AtSPL8                                             <---------------AtSPL3                                             --------->MYB55(2)                                             --------------->AtSPL8                                            <---------ANAC46                                       <---------At4g35610                                       <---------ZAT2                                      --------->MYB55(2)                                     <-----------RAV1(2)                                    <---------MYB52(1)                                   <-----------TGA1                                   <-----------HVH21                     <---------ATHB12                                  --------->ANAC46<---------TOE1(1)     <---------ARR14(2)                             --------->ARR14(2)  --------->SPL7         --------->ARR14(2)                             <---------ARR14(2)<---------SPL7      --------->ANAC58                        --------->ARR14(2)  <---------MYB55(1)     --------->ANAC58                        --------->GLK1(2)<---------DEAR3(1)      --------->At4g35610                        <---------ARR14(2)<---------MYB46(3)     <---------At4g35610                       <---------GLK1(1) --------->ALFIN1     <---------At4g35610          <---------                       --------->GLK1(1) <---------AtMYB61    <---------ZAT14            ----------->TGA1         <---------ARR14(2)  <---------MYB52(1)<---------PCF2 <------NtERF2          <---------MYB52(1) ----------->HVH21    <------ZmHOX2a(1)<---------O2           --------->At4g35610   <-------GAMYB   -   cgtctgaaggcgattcgacaaggaggaatccgttctgcgtcaggtggtgggtacgatattaggctgcagaagccaatcttcgataccgttgatgacgaag  26794400                             <------ZmHOX2a(1)                         <------NtERF2                        ------>NtERF2                       <---------ANAC46                      <------NtERF2                      --------->ATERF1(1)                     <---------RAP2.6(1)                     <---------DEAR3(2)                     ------>NtERF2                     <---------ORA47(2)                     <---------ERF1                     <---------RAP2.3(1)                     <---------RRTF1(1)                     <---------DEAR4(2)                     <---------ATERF1(1)                    <---------RAP2.3(3)                    <---------RRTF1(2)                    --------->ATERF1(2)                    <---------RRTF1(3)                    <---------ATERF1(2)                    <---------RAP2.3(2)                   <------NtERF2                   <---------ABI4(1)                  <---------ATERF1(1)                  ------>NtERF2                  --------->LBD16                                    <---------ARR14(2)                 <---------LBD16     <---------ANAC46             <------NtERF2       ------->TEIL--------->ATERF1(1)--------->LBD16           --------->ALFIN1      <---------ALFIN1--------->RAP2.3(1)                       <---------DEAR3(1)         --------->ALFIN1    --------->ANAC58--------->DEAR3(1)<---------TOE2(2)       <------MYB83    <---------ARR11(3)    --------->ANAC58<---------DEAR3(1)<---------TOE1(2)       <------MYB46(1)--------->GLK1(1)    <-- ------------WRI1--------->ANAC46   <---------LBD16          <---------AtMYB61--------->ARR11(3)----- -------->SPL7  <---------LBD16 --------->ATERF1(1)    --------->ALFIN1      <---------GLK1(1) <-----   agtacgacgcacttgtttcccggcggcgcgaggaggctcgcgggtttgtagttgaagatggggaaggtggcgatttgggatatctcgacgaaggtgagga  26794500                                                             <---------ANAC46                                                        <------MYB46(1)                                                        <------MYB83                                                       --------->MYB111(1)                                                       --------->MYB59                                                       <---------TOE1(2)     <------MYB83                                      <---------TOE2(2)     <------MYB46(1)                                  <--------P    <---------AtMYB61                                 <---------MYB55(1)  --------->ARR14(2)       --------->GLK1(2)        <---------MYB46(3)  <---------ARR14(2)      <---------GLK1(2)         --------->MYB55(2) --------->ATHB12  --------->ZAT18                 --------->ALFIN1 <------ZmHOX2a(1) <---------ZAT18              <---------DEAR3(1)                         ---------- ----ZmHOX2a(1)   --------->ALFIN1           ----------->HVH21                       ---------->DOF2 ---->ALFIN1    --------->O2               --------->At4g35610                    >>>>>>>>>TBF1 -ZmHOX2a(1)    <---------O2           ------->TEIL<---------AtMYB61           >>>>>>>>>TBF1       --   ggaggattggtcgaagccaagtggaccagaatcgactgatgaatcagacgacggtggtaggtttagtgggagacttaagaagaagaagaaagggaaagag  26794600                                               ------>NtERF2            <-----------RAV1(2)           --------->At4g35610          --------->TOE2(3)               --------->ZAT2     <---------At4g35610          <---------ANAC46     --------->ZAT2               ----------->GT1       --------->ZAT6     --------->At4g35610        --------->LBD16<---------RAP2.3(1)          <---------ANAC58 --------->ANAC58             <---------LBD16 <---------RAP2.6(2)           <---------ANAC58 --------->ANAC58           --------->GLK1(2)<---------LBD16     <---------TOE2(3) --------->ANAC46           --------->ARR14(2)<---------ANAC46<---------REM1(1) >DOF2  -------->P          <---------ARR14(2)<---------DEAR3(1) <---------TOE1(3) ------->MYB52(1)      ----------->GT1 ---------->DOF2 <---------YAB1       <---------ANAC46   caaacgcagcaacctcaggttaagaaggtgaatccggcgttaaaagctgcggctactatcactggtgaaggtagactttcgtctatgttcacatcttcga  26794700  Previous    Next  AGI:  At5g67100.1    Description:  ICU2 (INCURVATA2); DNA-directed DNA polymerase. Identical to DNA polymerase alpha catalytic subunit (POLA) [Arabidopsis Thaliana] (GB:Q9FHA3); similar to EMB2780 (EMBRYO DEFECTIVE 2780), DNA-directed DNA polymerase [Arabidopsis thaliana] (TAIR:AT5G63960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71866.1); similar to DNA polymerase alpha catalytic subunit (GB:O48653); similar to putative DNA polymerase alpha catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD81999.1); contains InterPro domain DNA-directed DNA polymerase, family B, exonuclease; (InterPro:IPR006133); contains InterPro domain Polynucleotidyl tr Range:  from: 26794220    to: 26802330    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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