Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->TOE1(1)                                                  --------->TOE2(1)                                              ------>MYB46(1)                                            ------->GAMYB                                            --------->DEAR3(1)                             --------->HSFB2a(2)                                           --------->MYB46(3)                              --------->LBD16                                           --------->DEAR3(2)                <------MYB83 <---------LBD16                                           <------------AtMYB77         <---------YAB1<----------DOF2                                          -------->P            <---------ICU4  <-------TEIL >ANAC55(2)                              --------->MYB52(1)    ------->TEIL <---------TOE1(2)    ---- -ANAC55(2)                --------->MYB52(1) ------>MYB83--------->At4g35610<------MYB46(1)---------   tctcaaacatgtttactaagaaaaacaaaaaacagagaatgactaaccgacctcgtaatccgatgaacatgactatgctaggttcaagctttccccgaat  26758000                     <---------ANAC58               --------->AGP1               <---------ARR11(1)               <-----------ARR10               --------->ARR14(2)               --------->ARR11(3)               <---------ARR14(2)               <---------ARR11(3)               <---------AGP1              <---------CCA1(2)              <---------ARR14(1)                                     ----------->GT1            --------->LBD16                                     --------->LBD16            --------->ANAC46                                   <---------ANAC58           <---------LBD16                                     <---------ANAC46           --------->HSFB2a(2)                                 <---------ANAC58          <---------LBD16                                   --------->ARR14(2)     <---------ARR14(2)                                     <---------ARR14(2)     --------->ARR14(2)                                   --------->ABI4(2)     <---------ARR11(3)                                   --------->MYB55(2)     <-----------ARR10                         <---------At4g35610   --------->MYB46(2)     <---------GLK1(2)                         ----------->RAV1(2)   --------->MYB59     --------->ARR11(3)         <---------GLK1(1)         <---------MYB46(3)   ----------->ARR10 <---------ANAC58          --------->At4g35610   --------->MYB52(2) <---------ZAT18 ===========================HOX2a_HOX2a  <---------AtMYB61 --------->ZAT18 ------>ZmHOX2a(2)   ------>ZmHOX2a(1)   --------->ALFIN1                           < <---------ZAT14<------ZmHOX2a(2)  ----------->RAV1(2)<---------DEAR3(1)              <------ZmHOX2a(1) --------->ZAT14============================HOX2a_HOX2a  <---------DEAR3(1)         <---------TOE2(3) ----->ATHB12--------->LBD16    --------->GLK1(1)----------->HVH21------------>MYB.PH3(2)      <----- >LBD16  <-----------GT1        <---------At4g35610   --------->ALFIN1           <---------MYB52(2)--   gagtgcagattttcccggatctagcttactagagagctcctgtaacatcatctgaagcggtggttccgagttagttaaaatcaactaaggagattaggga  26758100                                                                                        ---------->ID1                                                                             <---------HSFB2a(2)                                                                  <---------WOX13(1)  <---------ANAC58                                                        <----------DOF2      --------->HSFB2a(2)      ---------->DOF2                                  <------NtERF2      <-----------GT1 ---------ICU4    <-----------TGA1                    ------>NtERF2 --------->YAB1<----------DOF2 ----------------WRI1               <---------ZAT18  <---------DEAR3(1)<---------ICU4 <---------ANAC58 ------->ICU4    --------->YAB1     --------->ZAT18 <---------ZAT18----------->GT1<---------DAG2   cataattacaaagaaacaatcgtcaccatgtagattagggcacccttcttcttgggcgccttaggcagattgataatttccagacttttcgtctcaatct  26758200                             --------->ANAC58                         <-----------HVH21               <------ZmHOX2a(1)---------->DOF2          <---------ATHB12   --------->ANAC58         --------->ANAC58         --------->GLK1(2)   --------->AtLEC2       ---------->DOF2      --------->ZAT14        --------->WOX13(1)<------NtERF2            --------->WRKY18(1)   <---------ZAT14           <-      ----------------->AGL1--------->WOX13(1)------>ZmHOX2a(2)          <---------ZAT18    <--------   --------->ANAC58      ------>NtERF2      --------->ARR11(3)        <---------ANAC46<---------ANAC58   --------->ANAC58--------->MYB52(1)    ----------------------->TaNAC69(2)      <-----------RAV1(1)   --------->ANAC46<---------ARR14(2)    <-------MYC3 --------->ANAC58<---------ANAC58<---------ANAC58 <---------ALFIN1  --------->ARR14(2)    ------->MYC3 --------->ANAC46<---------ANAC58<---------ANAC46   catccacggccaatctaggaatatcggcgtcaagcaaagcgcatgtgatctcgttcaagcaactcttcagtttcgtgcagtccatgttgcttgttttatt  26758300                                                                <-------TEIL<-----------GT1                                                  --------->LBD16--------->MYB59                                                 <---------HSFB2a(2)      <----------DOF2                                                 --------->HSFB2a(2)  <------NtERF2                                             --------->DEAR3(1)--------->GLK1(2)                      ----------->HVH21    ------->GAMYB       --------->CCA1(2)                      <---------ETT(1)    --------->ANAC58    --------->ARR11(1)                   <---------ARR14(2)     --------->ANAC46    <---------ARR14(2)           <---------AtMYB61       ---------->DOF2--------->ANAC46    --------->ANAC58    --------->ARR14(2)         <----------DOF2 --------CCA1(2)   --------->ARR14(2)------>ZmHOX2a(1)        <---------GLK1(2)   <--------P -AHL20(2) --------->MYB52(1) <---------ALFIN1 --------->AtLEC2--------->ARR14(1)<-----------HVH21  <   catctcttcaaaagaccggcctatccgacccctcacttcctccaacgccatccagaaaattagagattcggtcgcgatttacaggttagggctttggttt  26758400                                   --------->LBD16                                   <---------TOE2(2)                                   <---------TOE1(2)                         <------NtERF2                                                             <-                        ------>NtERF2                                                              --                        --------->LBD16                                                           ---                       <---------LBD16                                                       --------                       --------->LBD16                                                       --------               <---------ANAC55(2)<---------ALFIN1                                     --------->YAB1              <-------TEIL    --------->ZAT18                                         ---------------       <---------ANAC55(2)   <---------ATERF1(1)                 --------->YAB1       <--------------      <-------TEIL     --------->ETT(1)                       <---------ICU4         ----------------    --------->ARR14(2)<---------LBD16           <---------AHL20(2)              --------->ZAT14   <--    <---------ARR14(2)<---------ANAC46--------->ALFIN1       --------->ICU4<---------At5g28300  ----- ---------LBD16--------->ANAC55(2)<-----------RAV1(2)   ----------->GT1   <-----------GT1 --------->YAB1   tgctcggatacataaatacgtcttgccgggactgccccaggtttggctgtttaataagttgtaaaaatcacaagttttacagtttacacccataatagta  26758500   ------------>CBF  --------->YAB1 --------ICU4 ------->YAB1 ------>ICU4            --------->ANAC58 ->YAB1                 --------->ANAC58                                                          --- --->GT1<---------AHL20(2)                                                                        --- >AGL15 --------->AHL20(1)                      ---------->ID1                       <----------DOF2 -AGL15 --------->AHL20(2)         --------->LBD16 <----------DOF2                  --------->TOE2(3) ->AGL2 <---------AHL20(1)         ------>ZmHOX2a(1)                      ----------->GT1         --- -------YAB1          ---------->DOF2           <-----------GT1          <---------TOE2(3)   <------- ---->YAB1         --------->At4g35610         <-----------GT1         ---------->DOF2<---------MYB52(1)   ataataacaataaattaggggagcgaaagcaaaattcctgaaatttgtttttcctttctgcccaaacaaaaaaaaaaggttttattcctttattttttcc  26758600                               <----------ID1                               --------->ANAC58                       <---------MYB46(3)                               --------->ANAC58                     --------->At4g35610           ===   <-----------HVH21        ------->GAMYB                       --------->MYB52(1)                --- ----->P                   --------->MYB46(3)                --------->ANAC55(2)                  <-- --->MYB46(1)         --------->ANAC55(2)                    <---------ANAC55(2) <---------CCA1(2)=== --->MYB83            <---------ANAC55(2)         ---------->DOF2   <---------At4g35610 --------->YAB1 ----GT1  <----------DOF2--------->MYB52(1)------------------------>ANAC81  ------>ZmHOX2a(1) -------   aaccttgtcagactttagaacatcacataacagacgacaaaaaaaaaaaaaaaaaagaacatcacataacagctgttcctctcatctctcttataaggtc  26758700                    <---------ANAC58           <------ZmHOX2a(2)          --------->ARR14(2)          --------->ARR11(3)          <---------ARR11(3)          <---------ARR14(2)          <---------ARR14(3)          --------->AGP1          --------->ARR14(3)                                                                  ------>ZmHOX2a(2)         --------->GLK1(1)                                                                  <--------        ----------->ARR10                                                                   ---------    <---------At4g35610 <----------DOF2              --------->YAB1                      <--------P <---------At4g35610<---------ANAC58                 --------->ZAT6                    --------->ATHB12 =================HOX2a_HOX2a                        <---------ICU4                   <---------YAB1 --->ZmHOX2a(1)     <---------ANAC46                <---------ATHB12                <---------ICU4 -------At4g35610<---------MYB52(1)               --------->WOX13(1)                --------->YAB1 ==================HOX2a_HOX2a                  ------------>CBF                   --------->ICU4   - -->ARR11(3)------>ZmHOX2a(2)          ----------->GT1       ---------->DOF2       <---------ATHB12 -   ctctgcttctgagatcttcgttgcttctttgccttctggtttagtttaaaatcaatcactaccaaaagccctaatcacagaagaaatcatggttgatctc  26758800                                      --------->MYB59                                   --------->ARR14(2)                                          ------                                   <---------ARR14(2)                                     --------->YAB1                                --------->LBD16                                    <---------YAB1 -ARR11(3)                     --------->LBD16                                    --------->KAN4(2) >ARR11(3)              <----------DOF2                              --------->ARR11(3)  <---------YAB1 -------->ZAT14      --------->ARR11(3)        --------->ANAC58      <---------ARR11(3)--------->YAB1 --------->DOF2      <---------ARR11(3)        --------->ANAC58     <---------CCA1(2) <---------YAB1-   agtaaagacttacaatttttcaaggtctttctccctgaattcggttctcacgaactggtatacttgttttatatctcatcagtttattcttataatatca  26758900  Previous    Next  AGI:  At5g66970.1    Description:  GTP binding. similar to signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] (TAIR:AT1G48900.2); similar to signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] (TAIR:AT1G48900.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49972); contains InterPro domain Signal recognition particle, SRP54 subunit, GTPase; (InterPro:IPR000897) Range:  from: 26757671    to: 26758351    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g66980.1    Description:  transcriptional factor B3 family protein. similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT3G06160.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76392.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) Range:  from: 26758789    to: 26760052    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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