Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->MYB52(2)                                                                              <---------ANAC58                                                                              <---------ANAC46                                                                         --------->ARR14(2)           --------->ARR14(2)                                            <---------ARR14(2)  ------>ZmHOX2a(1)                                                   <---------TOE2(3) <---------MYB52(1) -------ARR11(3)                                 <----------DOF2      <---------TOE1(3)<-------GAMYB ------>ARR11(3)             ---------->DOF2 <---------TOE1(3)    <-------GAMYB   <---------MYB46(3) -------ARR14(2)         --------->TOE2(3)   <---------TOE2(3)   <------MYB83 <---------ANAC58   <--- ------>ARR14(2)      <----------DOF2    <----------DOF2         <------MYB46(1)  --------->MYB52(2) ------>ARR10  ------>ZmHOX2a(1)      <-----------GT1           --------->MYB59 <---------MYB52(1)   aatcctcttacagtttcctctgttctttcttaaaagtgatttactttaaggctttttcgattcaatttggttgaggttttgcgtttgttcgttatggtca  26742700                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                         --------->STY1(2)                                                                         <---------ZAT2                   <---------ANAC46                                 <------MYB83                   <---------ANAC58                                 <------MYB46(1)                   <---------ANAC58                               <--------P               <---------ANAC58                                 --------->MYB55(2)          <---------At4g35610                ----------->GT1    <---------MYB46(3)          --------->At4g35610              ---------->DOF2     <---------AtMYB61      <---------YAB1         ----------->HVH21                <------ZmHOX2a(1) <---------AtMYB61       --------->YAB1---        <---------ANAC46        --------->MYB52(1)       --------->ATHB12--------->ZAT2--------->YAB1 ------YAB1    <---------ANAC58---------->DOF2         <-----------HVH21 <---------STY1(2)--------->YAB1   tgagagtatggctgatggcttacttgtagtaaacaaagggaagaggaaagttatatgtgtcattggtggtaggctagcttggagttttataataatcttc  26742800                                               <XXXXXXXXXXXXXXXXXXXXMIR778                                               <---------ETT(2)                                           <---------ANAC58              --------->TOE1(2)                                   <---------ARR11(3)      --------->ANAC58                                  <---------GLK1(1)        --------->ANAC58  <-----------GT1              --------->YAB1  --------->ETT(2)        <---------ATHB12 --->ZmHOX2a(1)         <-----------GT1    <---------ANAC58--------->ANAC46                     -----   ctatatacaattctattcatgtgttttttctaatcgaaatctcttgcggtctacaaaattcaagccaaattcaaacattcgagacttcaaaattctaact  26742900                        <------MYB83                       <---------MYB46(3)                       <---------AtMYB61                    --------->ATHB12                   <---------YAB1          <---------TOE1(3)--------->At4g35610                                      --------->AHL20(1)          <---------TOE2(3)<---------At4g35610                                      <---------ARR11(3)         <-----------GT1<------MYB46(1)                                             <---------AHL20(1)     <xxxxxxxxxxxxxxxxsmallRNA(i)                                            <---------ZAT18   <---------ZAT18<---------TOE1(3)                                    <---------MYB46(3)   <-------TEIL   <---------TOE2(3)        <---------YAB1      <------ZmHOX2a(1)    --------->AHL20(2) ---->ATHB12     <-----------GT1     --------->AtLEC2  <---------TOE2(3)     --------->ZAT18    <----   attggtgcatttaacgatttaacgattggtgctgaatgcatgcatatgattcaaaataaggcttaggaaactgtagttgctcactatatattagaaatgg  26743000                                                                                   --------->DAG2                                                                        --------->ANAC58                                                                        --------->ANAC58                                                                    --------->ANAC58         --------->AHL20(2)                   ----------->GT1       --------->ANAC58 --------->ANAC58                         ---------->DOF2        <---------REM1(1)*TSS         ------ --------->ANAC58               ------------>CBF               --------->YAB1     ---------->DOF2 ------ID1            <----------DOF2  <------ZmHOX2a(1)      --------->ICU4  <---------YAB1   <-----   gccaagtcaaataaaacagatgggcttaatgaagcccaataggataaagagaaatatcgaagaaatgatgaagcaagcttatgaaaaagttagtccaaat  26743100                                                                       --------->TOE2(3)                                                                     --------->ARR11(3) --------->KAN4(2)                                                                     <---------ARR11(3)<---------HSFC1(2)                                                                    --------->GLK1(1)  --------->HSFC1(2)                                 XXXXXXXXXXXXXXXXXXXX>MIR837-5P     <---------GLK1(1)  <---------HSFB2a(1)         --------->MYB52(1)  --------->GLK1(2)                 --------->At4g35610     --------->HSFB2a(1) --------->AtMYB61    --------->DAG2 <---------ANAC46        --------->YAB1        ----------->GT1 --->ARR14(2)        --------->DAG2  <---------ANAC58       <------ZmHOX2a(2)     ----------->GT1 ----ARR14(2)       ---------->DOF2  <---------ANAC58  <------ZmHOX2a(1)       <---------GLK1(1)  <--   ccaccaaaaacaatcggcgagaaaaagggggaatcagtttcttgcaagtttcaacaaggacgatcagaagaaatcttagagaaatcggaaaattctctta  26743200                                                   ----------->GT1                                               --------->ARR14(2)                                               <---------ARR14(2)                                          --------->MYB52(1)                                          ---------->DOF2                                       <---------At4g35610                <---------At4g35610            ----------->GT1            --------->At4g35610       ---------->ID1 -------LBD16--------->At5g28300   <-----------HVH21         <-----------GT1  <---------MYB52(1)   ctcgggttttgcatcggtgaatatgaattgcgaagtttgtcagctaaaggaactggtataaattttcgtcttcttcatctgtttgctaaaaaatcagtcc  26743300                                                                                            ---------                                                                                         --------->ANAC46                                                                                       --------->ANAC58                                                                                       --------->ANAC58                              --------->HSFB2a(2)                                      <---------ANAC55(2)                              <---------HSFB2a(2)                                     <-------TEIL                              --------->HSFC1(1)                                     --------->CCA1(2)                             <---------LBD16                                         --------->ARR14(1)                        <---------------AGL15                                       --------->ARR11(1)                        --------------->AGL15                                       <---------ARR14(2)                       <-----------------AGL1                     <------ZmHOX2a(1) --------->ARR14(2)                       <-----------------AGL3        <---------CCA1(1)        ------>ZmHOX2a(1)                       <-----------------AGL2        <---------RVE1(1)       --------->TOE1(2)                <---------ANAC58             <------MYB83       <---------TOE2(2)<---------HSFB2a(2)                <---------ANAC58             <------MYB46(1)    <---------TOE1(2)--------->HSFB2a(2)                <---------ANAC46         --------->ATHB12<---------AHL20(2)  --------->TOE2(2)   aattttgtagtcatcgagtcgtgtttctatttctggaattgttcgattggtttggatattttttcgcaggaagtggaatccttcgagatacgcgaagttt  26743400                                                                                       <-----------GT1                                                                                    <------ZmHOX2a(2)                                                                                   <---------ARR11(3)                                                                                   --------->ARR11(3)                   ----------->HVH21                                            <---------TOE1(2)                 --------->ANAC55(2)                                           <-----------GT1                 =====================bZIP_DOF                                --------->TOE1(2)                 --------->O2                                               <------ZmHOX2a(2)                 --------->TGA1a             <---------MYB52(1)            --------->ARR11(3)                 ===================================MYC_MYB                <-----------ARR10                 <---------O2     <---------ARR14(2)                       <---------AGP1               <---------ALFIN1   --------->ARR14(2)                       --------->ARR14(2)            <---------ETT(1)      ------->TEIL                             <---------ARR14(2)   --------->At5g28300     <----------DOF2   ---------->ID1                <---------ARR11(3)  <----------DOF2<---------ANAC55(2)        <-------GAMYB                 <---------ARR14(1)  =========================bZIP_DOF     <----------DOF2        <----------ID1------>ZmHOX2a(2) -->ARR10   --------->ANAC46     <---------CCA1(2)         ---------->DOF2<---------CCA1(2)   tgcgctgtaagtttccgacacttgacatgctttctgtatccactttcgttgttttggtatagaaagaaacaaaatcggatcttacgatctaaccatgttt  26743500                      ------>ZmHOX2a(2)                     <---------GLK1(1)                     <------ZmHOX2a(2)                    <---------ARR11(3)                   <---------CCA1(2)               <----------DOF2        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      --------->ARR14(2)                                                                           <-      <---------ARR14(2)                                                                          <--      --------->ARR14(3)                                                                          <--      --------->ARR11(3)                                                                          <--      <---------ARR14(3)                                                                         <---      --------->AGP1<---------AGP1                  --------->ATHB12               <---------ANAC58<-      <---------ARR11(3)   <---------GLK1(2) <---------ETT(2)                      <---------ANAC58<-      <---------AGP1--------->ARR11(3)       --------->ETT(2)               <------ZmHOX2a(2)    ----   cagtttaagatcttgtgctttagatctcagattagggcttagacctgtagacattgattcgaattttgagttttggcgatcgatttcttgttatctggtt  26743600  Previous    Next  AGI:  At5g66920.1    Description:  SKS17 (SKU5 Similar 17); copper ion binding / oxidoreductase. similar to SKS15 (SKU5 Similar 15), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G37160.1); similar to SKS16 (SKU5 Similar 16), copper ion binding / pectinesterase [Arabidopsis thaliana] (TAIR:AT2G23630.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72538.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43333.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43332.1); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Cupredoxin (InterPro:IPR008972); contains InterPro domain Multicopper Range:  from: 26740049    to: 26742852    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g66930.1    Description:  similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96307.1); contains InterPro domain Protein of unknown function DUF1649 (InterPro:IPR012445) Range:  from: 26743082    to: 26744978    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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