Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------ANAC46                                                               ----------------->AGL1                                                              --------->ARR11(3)                                                        --------->MYB52(1)                     <-----------GT1                 <---------At4g35610       <-----------GT1    <------ZmHOX2a(2)          --------->At4g35610                            < ------>At4g35610 <---------YAB1             --------->ATHB12 <---------ARR11(3)             -------- ------ARR11(3)<-------TEIL------>ZmHOX2a(2)--------->ICU4--------->ZAT6 --------------->AtSPL3     -   atctgcattttactaaattcattatacgatcgcgattgaaatcgaaatgagtggaagctaacaataccttgaggggaagtactcgacccgattcaacaag  26719400                             --------->At4g35610                             --------->ZAT2                             <---------ZAT2                         ----------->HVH21                        ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                                   --------->YAB1                       --------->At4g35610                                 <--------ATHB1           -                --------->ZAT2                                            <---------ATHB12          -                --------->At4g35610                                       <---------ATHB51         --          ----------->HVH21  <---------At4g35610                  ------->GAMYB                   ---      ------->TEIL    <---------AGP1   ----------->GT1          ------>MYB83                      <--   <---------MYB52(2) <---------ARR14(2)                        ------>MYB46(1)                 ----- ---------DEAR3(1)    --------->ARR14(2)                       --------->MYB52(1)      ------>ZmHOX2a(2) ->MYB46(3)     <---------ZAT2    ---------->DOF2              ----------->RAV1(1)    <---------At4g35610 -------->DEAR3(1)   <---------CCA1(2)--------->ALFIN1        --------->AtMYB61      <---------ARR11(3)   cgtcgacgaaccctgaccagctcggatctgaagctggaaagtggtagaacagaagaatgggagaccaacagagtcaataatagacttgatctgcttctta  26719500          <---------At4g35610          --------->At4g35610    <------NtERF2   <---------RAP2.6(3)   ------>NtERF2   <-----------HVH21  --------->DEAR3(1)                                                         ------>NtERF2  --------->ATERF1(2)                                                      <------NtERF2  <---------ATERF1(2)                                                      <---------LBD16------>MYB83  --------->RAP2.6(2)                                          --------->LBD16      <----------ID1  --------->RAP2.3(3)                                         <---------LBD16--------->LBD16  --------->RRTF1(3)                                          <---------ANAC46   <---------ARR14(2)==  --------->RRTF1(2)     --------->ANAC46                     <---------ANAC58   --------->ARR14(2)<-  --------->RAP2.3(2)    --------->ANAC55(1)                  <---------ANAC58<------NtERF2       --- --------->RAP2.3(1)     --------->O2                        <---------LBD16<---------ANAC46      <-- --------->RRTF1(1)      --------->ANAC58         <---------HSFB2a(2)     <---------RAP2.3(1)    ---- --------->ERF1          --------->ANAC58         <---------HSFC1(1)      <---------RRTF1(1)     <--- ----->NtERF2          <---------ALFIN1           --------->HSFB2a(2)     ------>NtERF2 --------->AtMYB61 -------->LBD16       <---------REM1(2)        --------->ARR11(3)        <---------DEAR3(1)    ------ ------->ANAC46     ----------->HVH21          --------->ARR14(2)        <---------RRTF1(3)<---------ATHB12 ------>MYB46(3)    --------->ANAC46           <---------ARR14(2)        <---------RAP2.3(3) -------- -------LBD16--------->At4g35610               --------->GLK1(2)         <---------RAP2.3(2) <------- ---->ARR14(2)     ------>ZmHOX2a(1)           <---------ARR11(3)      --------->MYB52(1) ------>MYB46(1)   tccgccgtcaatagctgcttcctcgacacgcctcgcttcgaagcatcagtatctagaagcgattgcgggaaaacgacggcgggaatacgaccaatcgtcc  26719600                                 ------->MYC3                                 <-------MYC3                                 <-------MYC2                                 <-------PIF5                                 ------->MYC2                                <---------ANAC46                                --------->TGA1a         <---------MYB52(1)     <---------O2  --------->LBD16       <---------CCA1(2) ======================HOX2a_HOX2a -----ZmHOX2a(2)       <---------MYB52(1)            ----------->HVH21 ------>ARR14(2)       --------->LBD16    <---------ANAC46 -------ARR14(2)      --------->ANAC46    ----------->RAV1(2) ----->At4g35610 ----------->HVH21   --------->ARR14(2)       <---------YAB1 ------At4g35610--------->HSFB2a(2)  <---------ARR14(2)    --------->ICU4 --->SPL7<---------ARR14(2)     <---------TGA1a  ------>ZmHOX2a(2)                                 <- ->TOE1(2)      ------>ZmHOX2a(1)------->PIF5  --------->ARR14(2)               <---------ETT(2)  --- --SPL7  --------->ARR14(2)     --------->O2   <---------ARR14(2)               --------->ETT(2)<----   gatcccgagccgatactcctcgacccgtagcttcacgtggaatcgcctggatcgtctgatactgatgaatacatcgaatcgatcgaccgaatgaagaagc  26719700                           <------ZmHOX2a(2)                           --------->GLK1(1)                           <---------GLK1(1)                          --------->ARR11(3)                          <---------ARR14(2)                          <---------AGP1                    <------NtERF2                    <---------MYB52(1)                    ----------->HVH21                    <---------REM1(2)                   <-----------TGA1                   ------>NtERF2                   <---------RAP2.6(3)                   <-----------HVH21                  --------->RAP2.3(3)                  --------->O2                  --------->RRTF1(3)                  --------->bZIP60(1)                  --------->ANAC46                  --------->RAP2.6(2)                  --------->RRTF1(2)                  --------->DEAR3(1)                  --------->ATERF1(2)                  <---------ATERF1(2)                 --------->ERF1                 --------->RAP2.3(1)                 --------->RRTF1(1)                --------->LBD16                ------>NtERF2                <---------ATERF1(1)               --------->ANAC46            <---------ALFIN1            --------->AtMYB61        --------->ANAC46           <---------ZAT2 ------->TEIL          <---------ATERF1(1)        --------->ANAC58                                      --------->MYB52(2)          ------>NtERF2<---------ANAC55(2)                                            <---------TOE1(3)         <---------ALFIN1 <---------ARR11(3)                                          <---------TOE2(3)         --------->RAP2.6(2)------>ZmHOX2a(2)                                    <---------ANAC46        --------->MYB46(3)--------->ARR14(2)                                     <---------ANAC58       --------->At4g35610<-----------ARR10                                      <---------TGA1a    <------ZmHOX2a(2)  --------->ANAC58  ------>NtERF2                           --------->TGA1a   <---------ARR14(2)  --------->ANAC58 --------->DEAR3(1)                       <---------O2   --------->ARR14(2)  --------->ANAC55(1)                                       --------->O2   <---------ARR11(3)  --------->ANAC55(2)                                       --------->bZIP60(1)   --------->ARR11(3) <---------LBD16--------->bZIP60(2)                         <---------ANAC58 ----------->ARR10--------->RAP2.3(2)--------->ANAC58                <---------ZAT6<---------MYB52(1) -----NtERF2--------->DEAR3(1)      <------NtERF2               <---------ANAC46 <---------bZIP60(1) ------>LBD16  --------->DEAR3(1)  <---------ATERF1(1)       <---------AtMYB61----------->HVH21 -----LBD16--------->ZAT2<---------CCA1(2)                  --------->ZAT14   ----------->TGA1 *TSS   cggaagatcagccacctccgccgtcacggatctcaggcctcgccaccatttcgccatctcagtgtggtttagagttcgatgtgacgttagggtttgtttc  26719800                                                                                                   --                                                                  <------------CBF        <----------                                                                <---------YAB1           --------->ATHB12                                                               <-----------TBP           --------->YAB1                                                              <----------DOF2            <---------ICU4                                                       <------------CBF                 <---------YAB1           <---------ANAC58          <----------DOF2  >>>>>>>>>EIN3           ----------->GT1      --           <---------ANAC58      <---------ZAT18     <-------TEIL--------->ATHB12    <---------AHL20(2)       <-----------RAV1(2)    <-----------RAV1(1)   <<<<<<<<<<<<<<<<<LFY      <---------ZAT6     <---   cttcaaaactcaggcgttggagggtttaagctctgtgggctttctatggactatatacattgggcttttattggcccatagtgttattttatcattgttt  26719900         <----------DOF2       ---------->ID1                              ------>ZmHOX2a(2)  <----------DOF2                                 <------ZmHOX2a(2)             <---------ANAC58 -------->ID1                                    <---------ARR11(3)             <---------ANAC46 --CBF<-----------GT1                   <----------ID1           --------->TOE2(3)               ---- ---->NtERF2                          ---------->DOF2            --------->YAB1 <---------ANAC58 <--- ------RAP2.6(2)                 ----------->GT1 --------->ARR11(3)    --------->YAB1     -----------   cggccttttttctttttttttttttttgggttagaatgtaaaaagacaagagatcgtttttgatttatcttaatcgaaatttgcttgttatccagttata  26720000                                                <---------ANAC58                                                <---------ANAC58        <-----------GT1             --------->YAB1                  <------MYB83         --------->ANAC55(2)             --------->AHL20(2)         <---------AHL20(2)        --------->YAB1  <-----------GT1                       --------->ATHB51         ---------->ID1 ----->AHL20(2)                      --------->YAB1  <----------DOF2    --------->YAB1 ------AHL20(2)               --------->YAB1 <------MYB46(1) <----------DOF2                       <- >GT1  --------->ANAC46      <---------YAB1 --------->MYB59---------->ID1         <----------DOF2  --   tatataactacacaataatatgtcgattaatatgatcacgaataatttggtcgtgcattttgtctttttcgtaataacaacattctttcattgtcttagt  26720100                                        <----------CDC5                                      --------->ANAC58        <---------HSFB2a(2)           --------->ANAC46        --------->HSFB2a(2)           --------->ANAC58       ----------------->AG         <---------ALFIN1      <-------TEIL                  --------->ANAC46 --------YAB1               <-------GAMYB  <---------TOE1(3)                         --------->ARR14(2) ------->ICU4               <---------At4g35610       <-------TEIL       <-------TEIL<---------ARR14(2)   tatgatttttccaaaaccgtatcagtatgcagttgctcacacgctaagcttatatatacgtccataggccaaagatgcaaatgtccatatactccatata  26720200                                            <-----------GT1                                         <---------ICU4                                     <---------ATHB12                                     <---------MYB55(2)                                     --------->MYB46(3)                                    ------>MYB83                                    ------>MYB46(1)                                    -------->P                                    --------->ANAC58                                    --------->ANAC58                                   --------->MYB55(1)                                  <---------MYB46(2)                                  <---------MYB111(2)                <---------ICU4    <---------MYB111(1)            <---------AHL20(2)    --------->MYB46(3) <---------AHL20(2)            --------->AHL20(2) <-----------GT1       --------->AHL20(2)           --------->AHL20(2)<---------ANAC58      <---------YAB1    <---------ANAC58        --------->AHL20(2)   <---------ANAC58  <---------DAG2        --------->ANAC55(2)       <---------YAB1      <-----------GT1--------->YAB1             <---------ANAC58            <---    <---------YAB1         <---------AHL20(2)  <----------DOF2   <----------DOF2 ------->GAMYB<------   ccttctctgattatttaattttgacttattttcttaccaaccaatattactttatttttatatgtttcttttcgtgacttcaaccctctctagtctatta  26720300  Previous    Next  AGI:  At5g66860.1    Description:  similar to 50S ribosomal protein-related [Arabidopsis thaliana] (TAIR:AT4G23620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16557.1); contains InterPro domain Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding; (InterPro:IPR011035) Range:  from: 26718278    to: 26719795    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version