Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                         --------->DAG2    --------->ARR14(2)                                                             --------->ANAC58 <    <---------ARR14(2)                               ----------->GT1               --------->ANAC58-- ----TOE2(2)               --------->ATHB12       <---------GLK1(2)           ---------->DOF2   <---- ----TOE1(2)              <---------YAB1       --------->ANAC46       ----------->GT1   ---------->DOF2   gttttggatttgggatttgttaacttatatgattaggctcaatagtttcacagaatattaaaaacttgagtagggtttaaaaaagaagcaaaaagctccg  26670500                                                      --------->ANAC58                                                      --------->ANAC46                                                      --------->ANAC58                                                    <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxsmallRNA(le3)                                                    <xxxxxxxxxxxxxxxsmallRNA(si3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                   <xxxxxxxxxxxxxxxsmallRNA(le3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                  <xxxxxxxxxxxxxxxsmallRNA(le3)                                                  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                 <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                --------->At4g35610                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              --------->MYB46(3)                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           ------>ZmHOX2a(1)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      --------->GLK1(1)                                     <---------ARR14(2)                                     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     --------->ARR11(3)                                     <---------ARR11(3)                                     <xxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     --------->ARR14(2)                                     <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxsmallRNA(se3)                               --------->ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(i)                               --------->ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             ---------->DOF2--------->MYB52(1)                            <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       ------>ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxsmallRNA(se3)                      <---------LBD16<xxxxxxxxxxxxxxxsmallRNA(le3)                     ----------->RAV1(2)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->SPL7                  <---------GLK1(1)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------LBD16<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxsmallRNA(s)<---------GLK1(1)        <xxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ARR11(3)        <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <------NtERF2  --------->GLK1(1) <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ARR11(3)       --------->GLK1(1)  --------->LBD16xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------SPL7  ------>NtERF2  <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------LBD16 --------->ARR14(2)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)*TSS <---------ANAC46<-----------HVH21<xxxxxxxxxxxxxxxxxsmallRNA(si3) <---------MYB46(3) --------->LBD16 <---------ARR14(2)<xxxxxxxxxxxxxxxxsmallRNA(s)<---------ARR14(2)              <----- ---->At4g35610 <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              ------ ---------LBD16--------->LBD16<xxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ARR14(2)             ------- ---->NtERF2<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        ----------->GT1 -----At4g35610<xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----------->GT1  <-   atgccgggaatcgaacccgggtctcctgggtgaaagccagatatcctaaccgctggacgacatcggatttgttgatgtctattcttgtaaatagtaaata  26670600                                                        --------->YAB1                                                  ------>NtERF2                                                  <---------RAP2.6(3)                                                 --------->RAP2.3(3)         <---------ATHB12                                                 --------->At1g77200        ------>MYB83                                                 --------->DEAR4(1)       --------->AtMYB61                                                 --------->DEAR3(1)       <---------MYB111(1)                                                 <---------ETT(1)         <---------MYB46(2)                                                 --------->DREB2C(2)      --------->MYB46(3)                                                <------NtERF2             <---------MYB111(2)                                                --------->RAP2.3(1)      --------->ANAC58                                                --------->ORA47(2)       --------->ANAC58                                               ------>NtERF2             <------NtERF2           <---------ARR14(2)                  <---------ATERF1(1)   --------->ANAC58      <-----------GT1                         --------->DEAR3(1)     <---------ATERF1(1) ----AHL20(2)        --------->MYB52(1)    ----------->HVH21         --------->ANAC58 --->AHL20(2)     <---------At4g35610    --------->ANAC46          <-----------RAV1(2)             -- -->ICU4   --------->ARR14(2)            --------->ANAC58          --------->ATERF1(1)  ---------->DOF2 --------AHL20(2)------->TEIL            --------->ANAC58  --------->ATHB12 ------>MYB46(1)      <---   tttagttttatcggttttgcatctaatggactaaaacatgaacacgagacgccgacaagaatgaatggggcaggcaccaaacatttgggtaaaagtatgc  26670700           <-----------GT1       --------->ATHB12       --------->ATHB51       -------->ATHB1      <---------YAB1                                                 --------->LBD16    <---------ANAC58  <---------ANAC58                                                 <---------LBD16      <---------ANAC46  ----------->GT1                                                <---------ARR14(2)     <---------ANAC58  <---------ANAC46                                           <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ANAC58                                          --------->ANAC58      --------->ICU4    - ------->ALFIN1                <---------ARR11(3)           --------->ANAC58 ----------->GT1       -- ------ANAC46      <-----------GT1                        ---------->DOF2   <------ZmHOX2a(1)  <-----   agtggggtattattgacaatttgaccattacaagagctaatcttagggggttttagttagtaaagcaaacccggtttaggagtaaatatggagtgagaat  26670800                                                                                               ------                                                                                               <-----                                                                   <------NtERF2               ------                                                                  ------>NtERF2               <------        <---------TOE2(3)                                         <---------MYB46(3)          -------       --------->MYB52(1)                                        <---------DEAR3(1)           <------     --------->ICU4                                           <---------DEAR3(1)              <------ ---------->GT1              <---------ICU4           <-----------GT1               *TSS      <------ --------->GT1              <---------YAB1           ---------->DOF2               <---------MYB52(1) ----ARR14(2)               --------->ICU4          <---------AHL20(2)            <---------SPL7   --   aggggtaattaagggaatttaagagaagtcatcatcgttttccatttttcttattttaagcgcctcggtggctatctctcactccgttcgcgtcttcctc  26670900      --------->HSFC1(2)      <---------HSFC1(2)     <---------GLK1(1) <---------TOE2(3) >ZmHOX2a(1)------>ZmHOX2a(1) ----------AGL15                                    --------->CCA1(2) --------->AGL15                                   <---------ARR14(2) -----------AGL1                                   --------->ARR14(2) -------->AGL15             --------->ARR14(2)   ----------->ARR10 ---------AGL15             <---------ARR14(2) --------->LBD16                          --------->MYB46(3) -----------AGL2        <-------TEIL          --------->ANAC46             <---------ANAC58 -----------AGL3  --------->ANAC46           <---------LBD16               <---------ANAC46        <- -------->DOF2  --------->ANAC46     <---------CCA1(2)  <---------AtLEC2   <---------ANAC58        <-   ttaaaggaaacctcctctacgcgaaattcgtattctctcatttcttctacggagatttgcatcgaagaaactgactcgcttgtggaatcaacaacaagac  26671000                <---------ANAC58                <---------ANAC58                <---------O2                --------->TGA1a                =================bZIP_DOF                ==================================bZIP_DOF                =================bZIP_DOF                ==================================bZIP_DOF                --------->O2                <---------TGA1a                                           ------>ZmHOX2a(2)           <---------CCA1(2)                                             <---------GLK1(1)         <---------ANAC58                                               --------->ARR11(3)         <---------ANAC58                                               <---------ARR14(2)         <---------ANAC46                                               <---------AGP1 --------->ARR14(2)        ------>NtERF2                                                   <---------ARR11(3)      --------->ATERF1(1)           <----------DOF2                     --------->ARR14(2)      <------NtERF2              ------>ZmHOX2a(1)             <---------ANAC58        <---------ARR14(2)     --------->At4g35610       ----------->RAV1(2)   <---------DAG2 <---------LBD16    <---------GLK1(2)     <---------At4g35610    <---------At4g35610  <---------ZAT14  <---------ARR14(2)--------->HSFB2a(2)    <---------DEAR3(1)      <---------ZAT2       --------->ZAT14 <------NtERF2      <---------HSFB2a(2) --------->ALFIN1     <----------DOF2      --------->ARR11(3)  <---------ANAC58<----------DOF2  <---- ----------RAV1(1)   <---------ANAC58      <---------ARR11(3)  <---------ANAC46<---------DAG2  <----- --------bZIP60(2)   <---------ANAC58  ---------->DOF2 <----------DOF2 <---------CCA1(2)--------->GLK1(2)   gatgtggcgctgcgtctctcgtggctttcgagctcctgcttcaaagacctcttcactctttgatggcgtctctggatctcgcttttccagattcttctcc  26671100                                                                     --------->ANAC46                                                                     --------->ANAC58                                            <-----------GT1          --------->ANAC58  ------>NtERF2                                        <---------AHL20(2)         <-----------GT1     --------->LBD16                            ===================================HOX2a_HOX2a            --------->ANAC46                            ------>ZmHOX2a(1)                 <---------AHL20(2)      --------->ANAC58             ------>ZmHOX2a(2)   <---------MYB52(1)         <---------ANAC55(2)       --------->ANAC58           <---------ARR11(3)  <---------ANAC58         ------>ZmHOX2a(2)            <---------LBD16     <---------ANAC46     <------------------------ANAC81   --------->ANAC55(2)    <-----------GT1 <- -----ALFIN1 ======================HOX2a_HOX2a        --------->ARR11(3)  --------->YAB1           <- ----ZAT14 --------->ARR11(3)  <---------ANAC58       <---------ARR11(3) <---------ATHB12  --------->AtLEC2   actggttctgtatgatctctcttccttctccttccgttttgtttattttctaattcgatcttatgtaattcacgaatcatagttttatccgccattcaaa  26671200                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                             --------                                                                                             <-------                                        <---------YAB1                                       <-------                              --------->LBD16                                              --------->CCA1(2)                              ----------->GT1                                             <---------ARR14(2)                             <---------LBD16                        <---------TOE2(3)     --------->ARR14(2)   --------->MYB52(2)       <---------LBD16                ----------->GT1          <---------ZAT14-- <---------MYB52(1)       --------->ARR14(2)               <---------ANAC46   <---------MYB52(1)<---- --------ANAC58           <---------ARR14(2)          <---------ANAC46      <-----------RAV1(1) ----- --------ANAC58           --------->GLK1(2) ------>ZmHOX2a(2)  <---------AHL20(2)<---------ANAC46----   tgcgttagtagtcgagcaaattgttgaaaatcggggaaaattttgatcgatttgttttgtggtgtttattttggttatctgttgagtagaccgatacgag  26671300                                                        <---------ANAC58                                                    <---------MYB46(3)        --------->ANAC46                           <-----------RAV1(1) ========================HOX2a_HOX2a               <---------DEAR3(1) ------>ZmHOX2a(1)                              <---------MYB46(3)       <-------GAMYB ----ZmHOX2a(2)                               --------->At4g35610     <------NtERF2 ------GLK1(2)                                --------->ZAT2         <---------ATERF1(1) ------ARR14(3)                               <---------At4g35610    <---------DEAR4(2) ----->ARR11(3)                               <---------ZAT2         ------>NtERF2 ------ARR11(3)                             <---------PCF2           <---------RAP2.3(1) ----->ARR14(3)                           <---------MYB46(3)         <---------ERF1 ----->ARR14(2)                          --------->ALFIN1            <---------ORA47(2) ------ARR14(2)                       <---------AtMYB61 <---------ANAC58<---------MYB46(3) ->ANAC55(2)                          --------->ALFIN1 <---------At4g35610 --TOE1(1)                          <---------MYB46(3)--------->ALFIN1--------->ATERF1(1) --ANAC55(2)                      <-------GAMYB --------->ALFIN1    <---------RAP2.6(2) ---->ZmHOX2a(2)                <---------RAP2.6(2)--------->ALFIN1 <---------RAP2.3(2) -----GLK1(1)              <---------YAB1<---------ANAC46           <---------DEAR3(1) ---->GLK1(1)            --------->YAB1<---------MYB46(3)          <---------ABI4(1)          <------ ----->AGP1       <------ZmHOX2a(2)--------->ALFIN1<---------AtMYB61<---------RAP2.3(3) <---------AtLEC2   atcctcttatacgatagtggatcacacttatgatgcggttgtggtgggagctggtggtgctggtcttagggcggcgattgggttatcggagcatggcttt  26671400  Previous    Next  AGI:  At5g66755.1    Description:  pre-tRNA. tRNA-Glu (anticodon: TTC) Range:  from: 26670496    to: 26670567    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g66760.1    Description:  SDH1-1 (Succinate dehydrogenase 1-1). Identical to Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial precursor (SDH1-1) [Arabidopsis Thaliana] (GB:O82663); similar to SDH1-2 (Succinate dehydrogenase 1-2) [Arabidopsis thaliana] (TAIR:AT2G18450.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ54899.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74538.1); similar to hypothetical protein OsI_023919 [Oryza sativa (indica cultivar-group)] (GB:EAZ02687.1); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); contains InterPro dom Range:  from: 26670884    to: 26674762    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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