Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   --                                                                                                   <-                                                             --------->ARR14(2)               -------                                                             <---------ARR14(2)--------->ATHB12<-----                                                     ========================HOX2a_HOX2a  <---------AHL20(2)                                          <---------ICU4------>NtERF2<---------ARR14(2)   <---------YAB1                     --------->ATHB12 --------->WRKY12<---------LBD16--------->ARR14(2)   --------->AHL20(2) -----ZmHOX2a(1)   <---------TOE2(3)  --------->WRKY38(1)------>NtERF2        --------->ICU4 <------- ------ANAC46   --------->AHL20(2)   <---------MYB52(1) --------->LBD16----------->GT1 <----------DOF2 -->ALFIN1      <---------AHL20(2)  <-------GAMYB    ------>ZmHOX2a(1)<------ZmHOX2a(2)<---------DAG2   aggatagaagaagttgattttaatgtttggggtctctccgttgatcattttcttcctccggccaatttgcagatcgaaaaatgatttagctttttattaa  26665800     <---------YAB1             <---------DAG2                           <---------YAB1   ----------->GT1              <----------DOF2                          --------->GLK1(2) ------->AHL20(1)         --------->YAB1                               <---------RVE1(1) ------->ARR11(3)        <---------YAB1                               --------->ARR11(3) --------AHL20(1)       <---------ARR11(3)           ------->GAMYB    <---------ARR11(3) -->AHL20(2)           --------->GLK1(1)            <---------ALFIN1----------->ARR10 ----AHL20(2)        <---------RAP2.6(3)  <-------TEIL          <---------At4g35610 --YAB1           <---------At4g35610    --------->CCA1(2)      --------->At4g35610   <---------ICU4   aaatattgttattcgtttttagccgatatcataactttttgagatacattatcaacacactcgtgcaactgagatattcttgacacaatttttgcatttg  26665900                                                                                          <---------ICU4                                                                                          --------->YAB1                                                                                          -------->HAHB4                                                                                         --------->ICU4                                                                                         <---------ATHB51                                                                                       --------->YAB1                                                                               <---------ZAT2                                                                               <---------At4g35610                                                                               --------->At4g35610                                                                    <---------ETT(2)  <---------AHL20(2)                                                            <---------ICU4    ----------->RAV1(1)                                                        <-----------GT1   --------->ARR14(2)            <-----------GT1                            <---------YAB1     <---------ARR14(2)         <---------------AtSPL8                   ----------->GT1<---------ANAC46  <---------ARR14(2)         --------------->AtSPL8                  <---------TOE2(3)  --------->ETT(2) --------->AHL20(2)   aaattggcaattttgtactactcatatagtttgaagcttcaattcactacaaaggttattactaattgtgtcgacaaatccagcagatttaataatgccc  26666000                                  <---------YAB1  --------->TOE2(3)                                 --------->ARR11(3)                                 <---------ARR11(3)         <-----------HVH21                       -                             <------ZmHOX2a(1)   --------->YAB1                                     <                        --------->YAB1    ----------------->AG                                      <                     --------->YAB1--------->YAB1----------->GT1                            ---------     <---------AHL20(2) -------->HAHB4    ----------------->AGL1<---------ANAC46           --------->ANAC46    --------->AHL20(2) <---------YAB1--------->At4g35610--------->MYB52(1) <-----------HVH21------>NtERF2   attccattaaatgttttttagtttaataataggatgatcatatgaccaaaatcgtaaataagggttaggggtaaacctgtcatttcaagcttcccgccca  26666100                   --------->YAB1                   --------->AHL20(2)              <---------AHL20(1)              --------->AHL20(1)              <---------AHL20(2)              --------->AHL20(2)             <---------YAB1 -------->ZAT18--------->AHL20(2)         --------->ICU4          <-----------GT1                  <- ---------------------WRI1           ----------->GT1             --------->ARR14(2)              ---- ---------ZAT18<---------AHL20(2)    <---------ANAC46       ------------>CBF                    ----- >LBD16  ------------>CBF    --------->AHL20(2)            <-----------GT1   *TSS           ---------   tgggcgctactcccaatttaataaaaaataagaaaataggcgtaaatatgagagtgtgttttttcaatataccctcggttttgaatttgctctcaaaagc  26666200                                                                                               ------                                   <---------SPL7                                             -------                                 <------NtERF2                                     --------->ZAT18                                ------>NtERF2             <-----------GT1          <---------ZAT14                                --------->LBD16        --------->ARR14(2)          --------->ZAT14                               --------->ANAC46      --------->LBD16               <---------ZAT18   <---------ATERF1(1)        --------->MYB46(3)   <---------LBD16               <---------DEAR3(1) --------ANAC46            <-----------GT1        --------->MYB52(1)        <--------P    --------->LBD16 ----->MYB52(1)     --------->At5g28300        <---------ANAC58            <-------GAMYB <---------HSFB2a(2) ------>HVH21     <---------DEAR3(1)<---------MYB52(1) <---------GLK1(2)  <---------MYB46(3) -------- ->DOF2    <---------MYB52(1) <---------LBD16  <---------ANAC58     ------>ZmHOX2a(1)    --------->HSFB2a(2)   gacggagacgactgtttggctcggtgatttctcccgccgtttgggtttttcttaccggaatttccttctccttcgatggttagtctgcgctccagaaaag  26666300      --------->SPL7     <---------MYB52(1)    --------->LBD16   <---------ANAC58   --------->ANAC55(2)                                               <---------HSFB2a(2)   <---------ANAC55(2)                     --------->LBD16           --------->HSFB2a(2)   <---------ANAC58     <----------DOF2    ------>NtERF2         ------->GAMYB   <---------ANAC46<----------DOF2        <---------LBD16     ---------->DOF2 ----->GT1        --------->AtMYB61      <---------LBD16      <---------DOF5.7(2) -->DAG2          <---------DAG2   <---------MYB52(1)       ------>ZmHOX2a(1)                  <----- -->DOF2       <---------ALFIN1  ----------->GT1     --------->HSFB2a(2)                     <-------   ttattccgtaagtccctccacctttccttttcatttcgttatttccggcgattttctaggtccttaacgctctcgaaatcgctcgctgttcttggtggtt  26666400                            <---------ANAC46                            <---------ANAC58                            <---------ANAC58         <---------YAB1                --------->HSFB2a(2)                           ---------->ID1 --------->AHL20(1)                 <---------ICU4 -----DOF2           <---------YAB1       <---------AHL20(2)                <---------YAB1 --MYB46(3)  --------->ANAC46             <---------AHL20(1)               <-----------GT1   tttggttccctctctgcgtaattttgtttgtcgtgtttttggattatattctctgactattggtctcactgttgatttatcatttctcgattttggattt  26666500                           --------->DEAR3(1)                           ----------->HVH21                        --------->TGA1a                          <---------At4g35610          <---------At4g35610                          --------->At4g35610          ----------->GT1                          <------NtERF2              <-----------RAV1(2)                        <---------WRKY38(1)       <---------ANAC58 ------>MYB83                        <---------WRKY12          <---------ANAC58 ------>MYB46(1)                        <---------WRKY45          <---------ANAC46<---------ALFIN1                      <-----------HVH21    ---------->DOF2       --------->MYB46(3)                 --------->ARR14(2)        ===================================bZIP_DOF                 <---------ARR14(2) --------->MYB52(1)<---------MYB46(3)             <---------LBD16  <---------ANAC46   <-------TEIL <-----------GT1              <---------MYB46(3)   ttggactcttagggcttcggaaatggtcagcgacgggaaaacggagaaagatgcgtctggtgattcacccacttctgttctcaacgaagaggtttgttct  26666600                                                                                 --------->HSFB2a(2)                               <----------DOF2                                   <---------HSFB2a(2)                              <---------ANAC58                                  <-----------------AGL3                              <---------ANAC58                               <---------ZAT14                           <--------P                  <----------DOF2      --------->ALFIN1                          <-------GAMYB           <-----------GT1         <---------ANAC58    ------>ZmHOX2a(1)                         <---------MYB46(3)  <---------ANAC58             <---------ANAC46    <------                        --------->ALFIN1     <---------ANAC46    --------->AHL20(2)           <------                        <---------AtMYB61    <---------ANAC58  <----------DOF2  =====================                      <---------ANAC46   <----------DOF2   ---------->ID1 <---------ANAC58<---------PCF2   atgttctactattttgccttcgtagtgtggttgctttgtgaaactttgtgtgttactctttgtttctttaaatctggggtgttctgtaaatgggtccttt  26666700  Previous    Next  AGI:  At5g66740.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75160.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74294.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22871.1); contains InterPro domain Protein of unknown function DUF620 (InterPro:IPR006873) Range:  from: 26664956    to: 26665784    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g66750.1    Description:  CHR01/DDM1 (DECREASED DNA METHYLATION 1); helicase. similar to CHR17 (CHROMATIN REMODELING FACTOR17), DNA-dependent ATPase [Arabidopsis thaliana] (TAIR:AT5G18620.1); similar to CHR17 (CHROMATIN REMODELING FACTOR17), DNA-dependent ATPase [Arabidopsis thaliana] (TAIR:AT5G18620.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO22862.1); similar to Swi2/Snf2-related protein DDM1; decrease in DNA methylation 1; CHR1 [Arabidopsis arenosa] (GB:AAP92713.1); similar to chromatin remodeling factor DDM1b [Oryza sativa (japonica cultivar-group)] (GB:BAF34943.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro d Range:  from: 26666177    to: 26670299    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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