Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                                                                                         ------->GAMYB                                                                                        <---------MYB52(2)                                                                                       ------>MYB83                                                                                      ----------->RAV1(1)                                        --------->ARR11(3)            --------->AHL20(1)<---------MYB111(2)                                        <---------ARR11(3)            --------->ARR11(3)<---------MYB55(2)                                       --------->RVE1(1)              <---------AHL20(1)--------->MYB46(3)                             <---------ARR11(3)              --------->ARR11(3)      ------->GAMYB                             --------->ARR11(3)              <---------ARR11(3)     --------->MYB46(3)     ----------->HVH21<---------ANAC55(2)         ---------->DOF2    <---------AHL20(2)------>MYB46(1) ----YAB1          <---------MYB52(1)  --------->CCA1(1)   ------->TEIL        --------->YAB1     <--   atgggatgcgacaatgttttcgttacatgaagttcttaaaaatatctgatcaaaaagaatgaagctcttaaatattttgaaacataaccaacaaacattt  26651100                                                            --------->TOE1(3)                                                            --------->TOE2(3)                                                       <---------ANAC58                           ---                                                       <---------ANAC58                           ---                                                     <---------ARR11(3)                           <--                 --------->YAB1                      --------->ARR11(3)             <---------ANAC58        ----------->GT1                             <---------CCA1(2)               <---------ANAC58       --------->DAG2                              <---------AHL20(1)      <-------TEIL           <--     <---------AHL20(2)                            <---------ARR11(3)     --------->CCA1(2)      <--- --------->AHL20(2)                                --------->ARR11(3)    <---------ARR14(2)      ---- -ICU4---------->DOF2     <-----------GT1          --------->AHL20(1)    --------->ARR14(2)      <--- --------DOF2   ----------->GT1                   --------->AHL20(2)--------->MYB52(1)        -------   cttttatataaagttaaaatgaaaattttaaacatccaaaaatttccatcaaatatatcttgccttaacaaaacagatacatgttttcttgttggataaa  26651200      <---------ICU4      --------->ATHB51   --------->YAB1 ------>ATHB51 ------>AHL20(2)                                                                         --------->HSFB2a(2) -------AHL20(2)                                                                      --------->ARR14(2) -------ICU4                                <-----------GT1                           <---------ARR14(2) ------AHL20(2)                         <---------DAG2                               <---------CCA1(2) ----->AHL20(2)  <---------ANAC55(2)    <----------DOF2              --------->GLK1(2)--------->ARR11(3) ------AHL20(1)  ----------->GT1     <---------ALFIN1                --------->ARR11(3)  <---------HSFB2a(2) -->AHL20(2)  <------ZmHOX2a(2)   <-----------GT1                    <---------ARR11(3) <---------LBD16   ttatttcataatttggatcaagtgaaacaaaatgtttctccacttttaactacgtttgtacattgtgcaaaaatctagagaacaagtatatctggaagaa  26651300                                --------------->AtSPL3                                --------->MYB111(1)                                <---------------AtSPL3                                --------------->AtSPL8               --------->ARR14(2)               <---------ARR14(2)   <-------TEIL      --------->ANAC58          <---------------AtSPL8       ---------->DOF2      --------->AtLEC2         <--------P            --------->AHL20(2)                            --      --------->ANAC58      <---------TOE1(3)    --------->YAB1          <---------CCA1(2)    <------ <-----------GT1            <---------TOE2(3)--------->AHL20(2)         ------->TEIL         --------   atgtaaccatgcaagtgtattctctcatttagggtaagtacatcccattaaacataaaaatagaaaagtatatgtatatccaattcgtctcatacatgca  26651400             <---------GLK1(2)            <--------ATHB1            -------->HAHB4            <---------ICU4           <---------YAB1           <---------ATHB12           --------->ICU4        --------->AHL20(2)  --------->ANAC58  --------->ANAC58  --------->ANAC46     <---------AHL20(2)                                ---------->DOF2 ------->ANAC46  <----------DOF2                                   ---------->DOF2              ----- -TEIL  <---------AHL20(2)           <-----------GT1        ----------->GT1                    <----- ->AtLEC2 <---------TOE2(3)      <----------DOF2 --------->At4g35610--------->DAG2     --------->YAB1   taccacacaattaatgattctttattcaattacatctttttacataaaaacagatggcataagtgtaaataaagggaaagacgacccaagaataaggggt  26651500                 ---------->DOF2         ----------->GT1        <---------TOE2(3)                            --------->ARR14(2)        <---------TOE1(3)                     *TSS   <---------ARR14(2)   <---------MYB46(3)                        ---------->DOF2 ------>HVH21 <---------YAB1           --------->AtMYB61 ------>ZmHOX2a(1)         <-----------HVH21 ------HVH21  ----------->TBP  <------ZmHOX2a(1)    <---------CCA1(2)    <----------DOF2   cacagtcgttgaggttataaaaagcatctcataggactcaacctcaccaaagtcatatcctattgcatcactctcctttaaacacagtcagagaaaacag  26651600                                                                                                  ---                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               ------                                         <------MYB46(1)                                       <-----                                         ----------->GT1                                 --------->ANAC58                                         <------MYB83                                    --------->ANAC58                                        --------->MYB59                                  --------->ANAC46                                        --------->MYB111(1)                           <---------REM1(2)                                        <---------TOE1(2)                            <---------ALFIN1                                       <--------P                               ------->TEIL  <------                                 <------ZmHOX2a(2)                            --------->ZAT14--------                                --------->ARR11(3)            <---------YAB1  <---------ZAT18<-------                     ----------->GT1<---------YAB1         <---------ATHB12   --------->ZAT18<-------   caactcttgtctgaaaaactagagagagaaaatggatcatggtaggttaatggatgatcaaatgatgctaggctctcaagtgtacccctacacgacccaa  26651700                                                                                                    -                                                                                                    < ---->GAMYB                                                                                       --- --->P                                                                                          ----- ->MYB83                                                                                     -------- ->MYB46(1)                    <------ZmHOX2a(2)                                             <------- >MYB83<-----------GT1        --------->ARR14(2)                    <------ZmHOX2a(1) <---------TOE2(3) >MYB46(1)            <---------MYB52(1)                      <---------At4g35610     <---------TOE1(3) ----ALFIN1           --------->DOF5.7(2)                  ---------->DOF2          ================= ---ALFIN1           --------->TOE1(3)                    ----------->HVH21     <------ZmHOX2a(1)---- ->MYB46(3)          --------->TOE2(3)  <------NtERF2    <-----------HVH21   <------ZmHOX2a(1) ------ --MYB59 --------->ZAT6       --------->AGP1            --------->LBD16<------ZmHOX2a(1)  <-------TEIL --MYB55(2)--------->ANAC46   <---------ARR14(2) --------->YAB1   --------->ALFIN1  ---------->DOF2--   ccccaaaattcacactgcatcatcgttaaccagatcgatggaggcgaagaatcaaaaccggtgaagcggaggaggaagaggaggagtaaaggttcatcag  26651800                         ------>ZmHOX2a(2)                        =======================HOX2a_HOX2a                        =============================HOX2a_HOX2a                        <------ZmHOX2a(2)                       --------->ARR14(2)                       <---------ARR14(2)                      --------->GLK1(1)                      <---------GLK1(1)             <---------ANAC58             <---------ANAC58             <---------O2============================HOX2a_HOX2a   ------>MYB83  <------NtERF2   ------>MYB46(1)   ----------->ARR10  --------->MYB52(1)<------NtERF2                     -------->ZAP1 --------->DEAR3(1)--------->LBD16                  >>>>>>>>>>WRKY11 --------->AtMYB61<---------ANAC58                  <---------WRKY18(1) -------->MYB46(3)<---------ANAC46                  >>>>>>>>>>WRKY6 ---------MYB52(2)<---------ANAC58                 ----------->HVH21 ------>RAP2.6(2)<---------LBD16                   --------->WRKY12 ---->At4g35610--------->ALFIN1                    --------->WRKY38(1) ->At4g35610 --------->O2======================HOX2a_HOX2a                                        --- --At4g35610 <---------bZIP60(2)                 <---------At4g35610                     <---------HSFB2a(2) ======================bZIP_DOF                  --------->At4g35610                     --------->HSFB2a(2) ----->MYB46(3)----------->HVH21              <------ZmHOX2a(1)                         <---------LBD16 --->ANAC46  <---------TGA1a            <------ZmHOX2a(1)                               <---------ANAC46 ---->NtERF2 --------->TGA1a          <---------TOE2(3)                                <---------LBD16   ccaccaacgaagaagacgtggcggagatcggagggatgttgaggaagaggaagttgaccgatgaacaagtgaacatgctcgaatatagcttcgggaacga  26651900                                                                                            <-------MYC3                                                                                            <-------MYC2                                                                                            ------->MYC2                                                                                          ------->TEIL                                                                                        <---------ZAT14                                            --------->ARR11(3)         <------MYB46(1)  <---------ZAT18                                           <------MYB46(1)             <------MYB83     --------->ZAT14                                           <------MYB83           <---------MYB46(3) <---------ANAC46                                          --------->MYB46(2)    <------NtERF2        --------->DEAR3(1)                                      <---------ZAT6           <---------MYB46(3) ------->GAMYB                                  --------->LBD16             --------->ALFIN1    --------->DEAR3(1)                                 --------->DEAR3(1)         <---------ZAT2       --------->MYB46(3)                                <---------LBD16             --------->ZAT2     <---------GLK1(2)                             <------ZmHOX2a(2)              --------->At4g35610<---------ARR14(2)                            <---------ARR14(2)              <---------At4g35610--------->ARR14(2)                            <---------ARR11(3)              <---------TGA1a --------->HSFB2a(2)                            --------->ARR14(2)              --------->O2    <---------HSFB2a(2)                      <------ZmHOX2a(1)   --------->MYB59   <---------O2    <---------HSFC1(1)                      ===============HOX2a_HOX2a            ==============================MYC_MYB                  ===================HOX2a_HOX2a            =================bZIP_DOF<---------ANAC58           <-----------RAV1(2)------>ZmHOX2a(2)           <-----------RAV1(2)--------->LBD16------->MYC3         <-----------HVH21  --------->ARR11(3)         ----------->HVH21    --------->HSFC1(1)   --------->At4g35610==============HOX2a_HOX2a       --------->LBD16 --------->MYB59<---------ANAC58   --------->ZAT2 <------ZmHOX2a(1)<------NtERF2 <---------WRKY18(1)<---------MYB52(1) --------->AtLEC2 ------>YAB1      ==================HOX2a_HOX2a ----------->HVH21 <----------DOF2--------->DEAR3(2)   gcataagctggagtcagggaggaaggagaagatcgccggagagttaggtcttgacccgagacaggtggctgtttggttccagaaccgccgtgcacgttgg  26652000  Previous    Next  AGI:  At5g66700.1    Description:  HB53 (homeobox-8); DNA binding / transcription factor. Identical to Homeobox-leucine zipper protein ATHB-53 (ATHB-53) [Arabidopsis Thaliana] (GB:Q9LVR0); similar to ATHB40/HB-5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G36740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22892.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047); contains InterPro domain Homeobox; (InterPro:IPR001356) Range:  from: 26651546    to: 26653111    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version