Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ------>ZmHOX2a(1)                                                           --------->TOE2(3)                                                     <----------DOF2                                                    ===============HOX2a_HOX2a                                                    ------>ZmHOX2a(2)                                                   ================HOX2a_HOX2a                       --------->ANAC58            <---------RVE1(1)                      -------->P                       --------->ANAC58            <------ZmHOX2a(2)                     --------->WOX13(1)                       --------->ANAC46           <---------ARR11(3)               ------->GAMYB                   --------->GLK1(1)              --------->ARR11(3)              --------->ANAC58                   <---------GLK1(1)              --------->ARR14(3)             >>>>>>>>>MYB98               <---------TOE1(3)                  <---------ARR14(3)            --------->MYB52(1)         <---------MYB52(1)                       <---------ARR14(2)         --------->TOE1(3)     <---------At5g28300 ---------->DOF2          --------->ARR14(2)     <---------ARR14(2)  <----------DOF2<------ZmHOX2a(1)                --------->AGP1         --------->ARR14(2) ------->GAMYB ------DOF2    <---------TOE2(3)                ----------->ARR10  <----------DOF2--------->ANAC58 --   ttgcctttaccgtttctaaggaaacccgaaagcagagcattccatgagacgagatctttttcctcaacgctttcgaataccctaacggaatcaaccaagt  26566500                                                                                          <----------                                                                                        <------NtERF2                                                                                       <---------RAP2.6(3)                                                                                       <---------SPL7                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                     --------->CCA1(2)   <---------ANAC46             <---------ANAC46                                    <---------ARR14(2) ------>NtERF2                  <---------RAP2.6(2)                              <---------ARR14(2)     <---------At4g35610   <---------ANAC58       <--                          <---------ZAT18        <-----------HVH21         <---------ANAC58     <----            <-------TEIL  --------->ZAT18     ------>ZmHOX2a(1)    --------->YAB1    ---------->ID1 < ------------->AtSPL3---------->DOF2--------->ARR14(2)--------->DEAR3(1)   <---------ANAC46------>ZmHOX2a(1)   gtccgtacttggagtacatgtcaataagcgcagttttggatatggttcctgtttcagcgccttgtttgatcatcaaggcgtgaacttggcgtcctgtttc  26566600                               --------->LBD16                             <---------LBD16           <------ZmHOX2a(2)                            --------->MYB52(1)        --------->ARR11(3)                           <---------ARR14(2)   --------->At4g35610   --------->ANAC58        --------->ARR14(2)   <---------At4g35610   <----------ID1       --------->LBD16         <---------ZAT2   --------->ANAC58     --------->HSFB2a(2)     --------->ZAT2  --------->SPL7       --------->LBD16       <---------ANAC58 -------AGL3      --------->ANAC46           <---------ANAC58                    ---------->DOF2 -------------AtSPL3  <------NtERF2       --------->ZAT18                ------->TEIL -----LBD16       --------->ANAC58       --------->ALFIN1                --------->GLK1(2) ---------SPL7    --------->ANAC58   ---------->DOF2----------->ARR10 <---------ATHB12          <----   tgggtacgacaagagggaacaggccccgagaaccggagtgaaagtgtgcgagctgagatcagggctagccctatgaatctgaagaaagagagccaaggtg  26566700                                                                                               ------                                                                                            <--------                     --------->ALFIN1                           <------NtERF2               <--------                  <---------DEAR3(1)                           --------->LBD16         <------NtERF2                  <---------AtMYB61                           <---------RAP2.6(2)     <---------DEAR3(2)                --------->LBD16                               <---------ANAC46       <---------DEAR3(1)               <---------ANAC46                      --------->ARR11(3)              --------->ETT(1)              <---------LBD16                   <------ZmHOX2a(1)                   <---------ORA47(1)              --------->ZAT14             --------->ANAC55(2)--------->RAP2.6(3)  <---------MYB46(3)      <---------GLK1(1)   <---------TGA1a <---------ANAC55(2)<---------LBD16     --------->ALFIN1      --------->GLK1(1)   <---------O2  <---------ZAT14<-----------------AGL1    <---------AtMYB61 -------HVH21 <---------ZAT14        <---------ZAT6<---------AtMYB61         <-----------RAV1(2)<----   tcatttgggtttccactgcggaggtgagacgagagttgagagttaagtgaggagaggtctcgttgcggcaattcgtcgaacaggtggtcggcatgggtgg  26566800                              ------>MYB46(1)                    --------->TOE2(3)                --------->DOF5.7(2)        --------->ANAC58                   ===================================MYC_MYB                   <---------ANAC55(2)     <---------ANAC46         ------>MYB83       <---------DOF5.7(2)            --------->ANAC46    <---------LBD16--------->TGA1a             --------->DOF5.7(2)              --------->ANAC58 ----->GT1         --------->ANAC46            --------->At5g28300           --------->ARR14(2) -ANAC58         <---------ALFIN1             ------->GAMYB                  <---------ARR14(2) -ANAC58  ===================bZIP_DOF      <-----------GT1          --------->DAG2     --------->TOE1(2) --NtERF2 ---------->DOF2   <---------MYB59--------->MYB52(1)      ---------->DOF2     --------->TOE2(2)   caaaatttcggataaagacacacctcagtaccaaattagtggatttaacggtaacgttacccagacgaataaagcgtccaatacgcaaacatgcgaacat  26566900                                                                                                   --                                                                                                  ---                                                              <---------WRKY12                    ---                                               <-----------TBP<---------WRKY38(1)                 ---               --------->ZAT14               <---------------AGL15                         <---------AHL20(2)         <---------At5g28300      <---------At4g35610   ---------->DOF2                   <---------AHL20(2)   <---------ANAC58 --------->ANAC46         <----------DOF2 --------->WRKY18(1)          --------->AHL20(1)   <---------ANAC58 --------->ANAC58         --------------->AGL15--------->TOE1(3)       --------->AHL20(2)   *TSS <-----------GT1     <------------CBF<-----------------AGL2--------->TOE2(3)       <---------AHL20(1) <-----------GT1    --------->ANAC58        <-----------------AGL3<---------MYB59    ------------>CBF   gttttacttgttaccgctacagacgaaacttattgaagcagagctatctttttatgggcaaaggtcaacctaaatgtctgtctgatcaacaatttattag  26567000                           <---------DAG2      ---------->DOF2      <----------DOF2 --------->RAV1(1)     --------->REM1(1) ------>ANAC46    ----------->GT1                                    <----------DOF2        --------- ------>ANAC58   --------->DAG2                            --------->ANAC46               <----------DOF2 ------>ANAC58 ---------->DOF2  <----------DOF2  <----------ID1   --------->GLK1(2)  ------->TEIL----   acgacataaaaaggaagaaaaggttacaacttttctttctcaagttacaagagaacaaaacccctcacaatctttaacagagaaatgaatgcctttaagc  26567100                                     --------->ANAC46                       <----------DOF2                          <---------ATHB12        --------->ATHB12       --------->ARR11(3)                     >>>>>>>>>>>>>>>>>LFY--------->ANAC58                <---------ARR11(3)               --------->ZAT18     --------->ANAC58               <---------GLK1(1)               <---------ZAT14     --------->ANAC58               --------->GLK1(1)               --------->ZAT14     --------->ANAC46             <------ZmHOX2a(1)      <---------DAG2 ->DOF2      <---------ZAT18     <-----------GT1<----------DOF2--------->ANAC58        <----------DOF2 ----->RAP2.6(2)     <<<<<<<<<<<<<<<<<LFY--------->ANAC58      --------->ANAC58     <-----------GT1   cgaaaactttcccagtgagcactggccaatggattttacgcccaagaaaactttattggagaagcaggaaatcaagttctttgtttttacttttcaaatc  26567200                       <---------ALFIN1                      <------NtERF2                     <---------ATERF1(1)                     --------->RAP2.6(2)                     ------>NtERF2                     <---------ORA47(2)                    <---------RAP2.3(3)                    <---------ATERF1(2)                    <---------DEAR3(1)                    <---------RAP2.3(2)                    <---------RAP2.6(2)                   --------->RAP2.6(3)             --------->ANAC58             --------->ANAC58            <-------TEIL           --------->CCA1(2)           --------->ARR14(1)     --------->ANAC46          --------->ARR14(2)      --------->ANAC58    <-------TEIL  <---------ANAC58          --------->ARR11(1)      --------->ANAC58--------------->AtSPL8   <------ZmHOX2a(2)          <---------ARR14(2)    <-----------GT1   --------------->AtSPL3  --------->ARR11(3)          <---------GLK1(2)----------->GT1 <-----------------AGL2   <---------ANAC46        ----------->ARR10<-----------RAV1(2)   <----------DOF2      <---------ANAC58           ------        <---------YAB1--------->ATERF1(1) <---------At4g35610<---------LBD16               --------->YAB1     <---------ATHB12<---------RAP2.3(1)  <---------ZAT2--------->KAN4(2) <---------ARR11(3)  <------   caaacaaatcaagattcgcaaggcggcacaggttaaacgcctcaagctgcttttggtacattctcagggagcgtgagatcatcgagtactgaatcatatt  26567300                                                                                   --------->At4g35610                                                                        <---------ANAC58                                                                        <---------bZIP60(1)                                                                        --------->O2                                                                        --------->bZIP60(1)                                                                        <---------O2                                                                        <---------ANAC46                                                                        <---------TGA1a                                                                    <-----------HVH21                                                                   <-----------RAV1(1)         --------->HSFB2a(1)                                <---------ANAC58       <---------At4g35610         <---------HSFB2a(1)    --------->HSFB2a(2)         <---------ANAC58 --------->At4g35610     <---------ANAC58      --------->HSFC1(2)           ==========================bZIP_DOF          <     <---------ANAC58      <---------HSFB2a(1)          <----------DOF2 <---------ANAC58           <- --->GLK1(2)               --------->HSFB2a(1)       --------->ARR11(3) --------->TGA1a     --------- ---GLK1(2)                <---------HSFC1(2)        <---------ARR11(3) <---------ANAC55(1) <--------   ctgtatcgcgagcgttcttcttgtttagaagcttcttgaactcagcctcgtccaagttctttgcgttctctgtggcgtgagcttgagctaagttggagta  26567400  Previous    Next  AGI:  At5g66500.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G03580.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45856.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 26565221    to: 26566903    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g66510.1    Description:  GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3); carbonate dehydratase. similar to GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1), carbonate dehydratase [Arabidopsis thaliana] (TAIR:AT1G19580.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45859.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) Range:  from: 26566930    to: 26568856    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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