Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------TGA1a                                      <---------ANAC46                                      <---------ANAC58                                      --------->TGA1a                                      <---------ANAC58                                    ------>NtERF2                                    --------->LBD16                                   --------->ANAC46                       --------->ALFIN1                     <---------ANAC46 --------->O2                     <---------ANAC58 <---------O2                   <---------ZAT14 --------->DEAR3(1)                                 --------->ARR14(2)            ====================================MYC_MYB                          ------>MYB83            <-------GAMYB <---------ARR14(2)  --------->MYB52(1)                 ------>MYB46(1)        <---------ANAC46  --------->ARR14(2) ------>ZmHOX2a(1)                  --------->ANAC58   <---------MYB46(3)<---------ANAC58 --------->DEAR3(1)                        --------->ANAC58 --------ZAT6   <---------ANAC46 <---------ATERF1(1)                            --------->ANAC46 ----YAB1  <---------MYB46(3)    ------>ZmHOX2a(1)          ------>ZmHOX2a(1)  <---------MYB55(2) ->ATHB12 <---------AtMYB61     <---------ALFIN1        --------->ARR11(3)     --------->MYB46(3) -YAB1  <-----------RAV1(1)   ------>ZmHOX2a(1)   ----------->GT1   <-----------GT1   <---------ARR14(2)   agtgtttgttctgtggttgtctggagtgtttcctcctccgccgtgtcctaacgagaaaaatcctgccattttccgataccaccagccatatatgaccaat  26523400                                            --------->ARR11(3)                                            <---------ARR11(3)                 <---------ARR11(3)                                            --------->AGP1                     --------->ARR11(3)                                            <---------AGP1               --------->YAB1                                            <---------ARR14(3)        --------->WOX13(1)                                            --------->ARR14(3)       ------>ZmHOX2a(2)                           <-----------GT1  <---------ARR14(2)      <------ZmHOX2a(2)                <-----------GT1             --------->ARR14(2)     <---------ARR14(2)              <----------DOF2             ----------->ARR10        <---------AGP1              <---------DAG2     <---------ANAC46                  --------->AGP1   <-----------GT1             <---------ANAC58<---------ANAC58       <----------DOF2--------->ARR11(3)             <---------ANAC58<---------ANAC58 ------>ZmHOX2a(2)    <---------ARR11(3)         <----------DOF2   <---------AHL20(2)<------ZmHOX2a(2)     --------->ARR14(2)               -   ttcaagaagggctttgctttaccacatatttacttgcctagactaagatcttgactttcagagagtgaagatctatcaaaagattttaacagaagaagac  26523500                                  <---------YAB1                                <---------ICU4                                -------->HAHB4                                --------->YAB1                               --------->ICU4                               <---------ATHB51                            --------->AHL20(2)                            <---------AHL20(2)               <---------YAB1--------->YAB1       ------>ZmHOX2a(2)  <----------DOF2      --------->GLK1(1)  ======================HOX2a_HOX2a      <------ZmHOX2a(2)  ------>ZmHOX2a(2)      <---------GLK1(1) <------ZmHOX2a(2)     <---------ARR11(3) =======================HOX2a_HOX2a ---------->DOF2     <---------AGP1     <---------RVE1(1)                --------->ANAC58     --------->ARR11(3)--------->ARR11(3)             <----------ID1                              <--    --------->RVE1(1)  <---------ARR11(3)         >>>>>>>>>TBF1       --------->TOE2(3)           --- ---------->DOF2       --------->AGP1          >>>>>>>>>TBF1        <-----------GT1      --------->ZAT14 -------->AHL20(2)    <---------GLK1(1) <------ZmHOX2a(1)--------->ANAC58--------->MYB52(1)      <---   aataaaagatctctctcttgatagagatctttaattatgagaggatgaagaagaagaagacgaaagagattaacttaatggaagaatgtagagtagtcta  26523600                                                               <---------DEAR3(2)                                                              --------->ETT(1)                                                             ---------->ID1                                                       <------MYB46(1)                                                       <------MYB83   <---------ANAC58 -------ARR11(3)                                       <---------MYB46(3) ------>ARR11(3)                 <----------DOF2  --------->DAG2      <---------ANAC58 ------CCA1(2)            <---------TOE2(3)      ---------->DOF2      <---------ANAC46   tatctagggtttgtttagaaatcgaatagaggtttcttttagtactgagaaaaaagttggtttgtcggtatggagtgtatttaagaggggatagagagag  26523700                                                            --------->TOE2(3)                                                            --------->TOE1(3)                                                         <---------ALFIN1                                                     <------NtERF2                                                    <---------ATERF1(1)                                                    ------>NtERF2                                                   --------->DREB2C(2)                                                   --------->RRTF1(2)                                                   --------->RAP2.3(2)                                                   --------->RAP2.6(2)                                                   --------->ANAC46                                                   --------->DEAR3(1)                                                   --------->RAP2.3(3)                                                   --------->RRTF1(3)                                                  --------->RAP2.3(1)                                                  --------->RRTF1(1)                                                  --------->ORA47(2)                                                  --------->ERF1                                                 <---------ATERF1(1)                 <---------GLK1(2)                                                --------->ANAC58                   --------->AHL20(2)                                                --------->ANAC46                   <---------AHL20(2)                                                --------->DEAR3(1)                --------->AHL20(2)         ------->TEIL           <-----------HVH21------->GAMYB            ------>ZmHOX2a(1)    *TSS<-        <---------CCA1(2)<----------DOF2        --------->ANAC58 <-----------GT1  <---------AHL20(2)<   agagagagatgtatctcagagaggtttctttctctgtctcgcgctctgcaacgccgccatcaccttaatactcttcctctcttattaaattctctgtctc  26523800                                                                                            <-------MYC3                                                                                            ------->MYC3                                                                                            <-------MYC2                                                                                            ------->MYC2                                                                                           --------->O2                                                                                           <---------ANAC58                                                                                           <---------ANAC55(2)                                                                                           --------->ANAC55(2)                                                                                           <---------ANAC55(1)                                   ------------>CBF                              <---------MYB52(1)                              ------>ZmHOX2a(1)                             <-----------GT1<---------O2                          <-----------GT1                               --------->ARR11(3) --------->TGA1a                       --------->ARR11(3)                               <---------ARR11(3) <---------ANAC46                       <---------ARR11(3)                              <---------CCA1(2)   <---------TGA1a                       <---------GLK1(2)--------->AHL20(2)           --------->CCA1(2)     <---------ANAC58                       <---------ARR14(2)                           --------->ARR11(3)<---------ICU4                       --------->ARR14(2)                           <---------ARR11(3)--------->YAB1                     --------->LBD16 --------->WOX13(1)           --------->ANAC58--------->WRKY12        <------------------------ANAC81 <---------AHL20(2)        --------->ANAC58--------->WRKY38(1)    <----------DOF2 <---------HSFB2a(2)<---------ATHB12     --------->TOE1(1)<---------At5g28300 ---------DOF2      --------->HSFB2a(2)--------->AHL20(2)  <---------HSFB2a(2)  =====================MYC_MYB ------------------------ANAC81  --------->REM1(1)         --------->HSFB2a(2)  <-------GAMYB   tcttttcttttttgtttgttttccagattttccttacaccaattaatatcacaaaacacttctcggacaagatatatcttaccgttgatcatcacgtgtt  26523900          --------->WRKY18(1)         --------->At5g28300     ------>ZmHOX2a(1)                                                         ------>NtERF2    --------->TOE1(2)                                                      --------->ANAC58   ------>ZmHOX2a(2)                                               --------->LBD16  <------ZmHOX2a(2)                                               --------->HSFB2a(2) --------->ARR11(3)                                               <---------HSFB2a(2) <---------ARR11(3)      ------->MYC3                            <---------LBD16 --------->AGP1 <-----------RAV1(1)                   <---------MYB52(1)   --------->ANAC46 --------->ARR14(2)      <-------MYC3      <-----------GT1      --------->MYB52(1)      <----------DOF2 <---------ARR14(2)     --------->O2    <----------DOF2 <----------DOF2    --------->ANAC58         <   ttagatcctgcggtcaatatgttgccacgtttacaacttcggcttttactctctccgtcttttctctaccggaaaacacgctgcctcttcctttgtttgt  26524000                                     --------->ZAT6                                   ------>ZmHOX2a(1)                             <---------AHL20(2)                            <---------AHL20(2)                            --------->AHL20(2)                    --------->ARR11(3)                         <--------HAHB4                          <<<<<<<<<RAP2.2                 <---                         --------->YAB1                    <---------ANAC46                      <---                        <---------YAB1                    <---------TOE2(3)                     -----              XXXXXXXXXXXXXXXXXXXX>MIR406           <---------YAB1<---------ARR11(3)            <---- ---------MYB52(1)    --------->YAB1 --------->REM1(1)   <-----------GT1                     --------   ctgtttgtgtttgccaaaatgctactataattaaatcctacactatttgtttatatgatttacgtttagatattaatctgtgtattatttgttcgaacga  26524100                         <----------DOF2                     --------->GLK1(1)                     <---------GLK1(1)                    <---------ARR11(3)             ------->TEIL--------------->AGL15            >>>>>>>>>RAP2.2 <---------AHL20(2) --------->ARR11(3)                  --------->ARR11(3) ------RVE1(1)     --------->HSFB2a(1)            --------->ANAC55(2)                              -- ------CCA1(1)     <---------HSFB2a(1)            ----------->GT1             --------->YAB1   ------ ---->ARR11(3)--------->ANAC58                    <---------ANAC55(2)      --------->YAB1     ------- -----ARR11(3)--------->ANAC58        --------->GLK1(1) <---------ARR11(3)<---------YAB1    --------- ->SPL7     --------->MYB52(1)   <---------YAB1  --------->MYB59      <----------DOF2     ------>ZmHOX2a(1)   tattttagtgaaatgaacggaagatttctttatttatgagaaatctatagttatgtaatatctaaactaaaactttataatcatatatcgtcctacacaa  26524200                                                                <---------YAB1                                                             <---------YAB1                                                           --------->YAB1                                                           -------->HAHB4                   <--------                                                           --------->ATHB51            <---------ANAC55(2)                                                           <---------AHL20(2)          <---------ANAC58                                                           <--------HAHB4              --------->ANAC55(2)                                                           -------->ATHB1              <---------ANAC46                                                          <---------ATHB51             <---------ANAC58                                                       <---------AHL20(2)          <---------ANAC58                                                       --------->AHL20(2)          <-------GAMYB                                           <-------TEIL<---------YAB1              <---------ANAC58                                          --------->ARR14(1) --------->ICU4       <---------MYB46(3)                                         --------->ARR11(1)<---------ICU4        <---------AtMYB61                                         <---------GLK1(2)<---------YAB1       <----------DOF2     -- ------->ALFIN1                        ----------->ARR10  --------->ICU4      <---------ANAC58     -- --->MYB52(1)                --------->GLK1(2)        --------->AHL20(2)      <---------ANAC58    --- -->ANAC46  <---------ARR14(2)  <----------DOF2       <---------AHL20(2)<---------ARR11(3)  <-------- >ANAC46 <---------ANAC46   <---------GLK1(2)        --------->YAB1     --------->ARR11(3)<---------ANAC46   cgttggggactgggtatacttgtatttttagattctttagttagattcgatgcaattttaattattattagcgaaatcttgctttggttgcgtagtgtat  26524300  Previous    Next  AGI:  At5g66350.1    Description:  SHI (SHORT INTERNODES); transcription factor. similar to STY1 (STYLISH 1) [Arabidopsis thaliana] (TAIR:AT3G51060.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45842.1); contains InterPro domain Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511); contains InterPro domain Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); contains InterPro domain Protein of unknown function DUF702 (InterPro:IPR007818) Range:  from: 26521693    to: 26523795    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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