Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <---------AtLEC2                                                      --------->ANAC58                                                      --------->ANAC58                                                 --------->ANAC58                                                 --------->ANAC58                                               <---------AtLEC2                                              --------->ZAT14                                              <---------ZAT14                                              <---------REM1(2)     ------>ZmHOX2a(1)                        --------->ZAT18    --------->TOE2(3)                      <---------ANAC58 <-----------GT1                           <---------ANAC46                              --------->MYB52(1) -------AHL20(2)                           <---------ANAC58                            <---------MYB52(2) ---ICU4                                   --------->ALFIN1                   <---------ANAC46 -->YAB1                                 <---------ANAC58      --------->ANAC58   --------->CCA1(2) --HAHB4                        <---------CCA1(2)--------->ANAC46           ----------->GT1 --ATHB12            <---------YAB1      <---------ANAC46      --------->ANAC58<---------MYB46(3) ->ATHB5            <-----------GT1      <---------ANAC58 ----------->HVH21<---------AtMYB61       <-   ttttttcctcaaacttcaaaattttcattacagcatatcgctggtgtgtgcacggcatgcatgacaagctaaaacgaatggtggatataactaacatata  26478000                                         --------->ZAT2                                        --------->ANAC46                                        --------->ANAC58                                        --------->ANAC58                                     ------>ZmHOX2a(2)                                 <---------YAB1         --------->YAB1       <---------------AGL15   --------->YAB1    ------>MYB83       --------------->AGL15  --------->ICU4     ------>MYB46(1)           <----------DOF2         -- --------At4g35610          --------->YAB1     <---------MYB59       --------->AHL20(2)          ----   cagcttatactatacatggtatacaaacaaaaatgatgatccaagctaacctactcactcatagttgtccatttattctttctcaaaacaaaatcccata  26478100                                                                                    <---------ICU4                                                                        <---------ANAC55(2)                                                         ------->GAMYB  --------->ANAC58                            <---------ANAC58          ------>NtERF2     --------->ANAC58<-----------GT1                            <---------ANAC58          ----------->RAV1(1)          --------->ICU4 ------->ANAC46       <---------YAB1              --------->ANAC58 --------->YAB1  <---------YAB1  <- ----->ANAC46    --------->ZAT6                   --------->ANAC58<---------YAB1<-------TEIL  -------   caccagacctctaagtctaagtctacgattacgagcatagtcacaatgtctctcgccaacagtctcttatcatcaagtaagtttcattattttctcccca  26478200                                                                 <---------AHL20(2)                                                                <---------AHL20(2)                ------->TEIL                                    <---------AHL20(1)             --------->ANAC58                                   --------->AHL20(2)        ---------->ID1                                       --------->YAB1       <-----------HVH21          <-----------GT1          --------->AHL20(2)      <-----------RAV1(1)   <---------ATHB12              --------->YAB1                  --------->ICU4    <----------DOF2         <---------YAB1               --------->AHL20(2)      <----------DOF2  --- --------ARR11(3)         ------>ZmHOX2a(1)            --------->YAB1      <---------AHL20(2)    ---- -->LBD16    --------->ANAC58--------->YAB1      <----------DOF2--------->AHL20(1)   ----------->GT1   atatcactttgtcgcatgcatttccatcctatcatttccccatccaatctcctttaaaaataaaaataaaattggatttatttctttcagtaaaaatgaa  26478300                                                                                                <----                                                                                               ------                                                                                             --------                                                                                            <--------                                    ------->TEIL  --------->AHL20(2)                       --------->ANAC46                       <---------YAB1         <---------YAB1                               --------->O2           <---------YAB1 <---------TOE2(3)   ----------->TBP                             ------>ZmHOX2a(1)  ----------->GT1     --------->TOE2(3)     --------->YAB1                        <------MYB46(1) ------>DAG2 --------->ZAT14   <---------AtLEC2   <---------AHL20(2)              <------MYB83------- ------>DOF2 <---------ZAT14  <-------TEIL <---------YAB1          ------->TEIL  <---------AtMYB61  -   aaagttgtaaattagtatagtcttcattaatgttcatggaccttgattataaataaatgtcaaaaaatgaaactagacttgagttggtcttcctcgtcgc  26478400                            --------->O2                            <---------O2                            --------->TGA1a                            --------->ANAC46                            ==========================bZIP_DOF                            <---------TGA1a                            ====================================MYC_MYB                            --------->bZIP60(2)                   ------>NtERF2                  --------->bZIP60(1)                  <---------bZIP60(1)                  --------->ANAC58                  --------->ANAC46                  <---------TGA2(1)                  --------->ANAC58               <---------MYB52(1)               ----------->HVH21               ----------->TGA1              <-----------HVH21              --------->LBD16                                       <------NtERF2             --------->ANAC55(2)  --------->ANAC58                  --------->At4g35610     --------->ATERF1(1)  <---------ALFIN1                          <---------At4g35610    ------>NtERF2 --------->TGA2(1)                             <---------ATERF1(1)    <---------ATERF1(1)--------->ANAC46                 <-------GAMYB    --------->At4g35610--------->ANAC58    <---------DAG2<---------MYB52(1)    <---------At4g35610--------->ANAC58    <----------DOF2     --------->DEAR3(1)   *TSS------>NtERF2 <---------ALFIN1   <---------AHL20(2)    --------->ATERF1(1)              <----- --NtERF2    <---------ANAC58  --------->DEAR3(1)      <---------MYB46(3)                     <------ >NtERF2     <---------ANAC55(1)  --------->ANAC46  ------>NtERF2--------->ATERF1(1)       <---------DEAR3(1) -->ARF1     <---------ANAC55(2)  --------->ANAC58  --------->LBD16--------->ANAC58       ------>ZmHOX2a(1) ---HVH21    <---------ANAC58  <---------DEAR3(1) <---------LBD16<------NtERF2---------->DOF2 ------- -->DEAR3(1) <---------ANAC46<-----------HVH21   ------>ZmHOX2a(1) --------->ANAC58 <----------DOF2<- -------->ANAC46<---------ATERF1(1)     <-----------GT1--------->MYB55(2) ----------->RAV1(1) <------   ccatgccgctgccttccgtgacgccactccacgtcgacgcatttacttttcctccggctgttgagtcgcccgcttcccacaaaagacttttcctcggtgg  26478500                                          ----------->RAV1(1)                                        <---------At4g35610                                        --------->ZAT2                                        <---------ZAT2         <---------YAB1                 --------->At4g35610                          <---------MYB46(3)       --------->YAB1                 --------->ANAC46                 --------->ANAC46   <--------P                       --------->ANAC46              --------->YAB1 <---------YAB1 ----MYB46(3)                    <---------ZAT18               <----------DOF2--------->ARR14(2) ---DEAR3(1)                  ---------->DOF2                 --------->TOE2(3)--------->CCA1(2) -->ALFIN1--------->YAB1     <---------AHL20(2)            <-----------GT1    <---------ARR14(2) ----------RAV1(2)           --------->AHL20(2)     ----------->GT1    --------->ANAC58         ----- ---AtMYB61                  <---------ICU4      <-----------RAV1(1)   --------->ANAC58     <--------   tgcaggttagcatcatagtctgtctatacaattaatgcacacagcagcattatgtggctaattacctttaatcacgcagggatatgatggtttgatatta  26478600                                                                  <---------MYB52(1)                                                                 --------->At4g35610                                                                 <---------At4g35610                                                                 --------->LBD16                                                               <---------LBD16                                                          --------->WOX13(1)                      <---------WRKY38(1)               <---------MYB52(1)                      <---------WRKY12                  <------NtERF2                              --                     --------->WRKY18(1)               <---------RAP2.6(3)                         --          --------->ATHB12                             ------>NtERF2                            -----         <---------YAB1                               <---------ATERF1(2)                       -----       <---------ANAC58 <---------At4g35610           <---------ANAC46                  ---------->DOF2       <---------ANAC58 --------->At4g35610           --------->RAP2.6(2)        --------->ANAC58 <--      <-------TEIL  <-----------HVH21        --------->bZIP60(2)--------->ANAC46 --------->ANAC58---- ----->DOF2       <---------ANAC46    ---------->DOF2 --------->ATERF1(2)   --------->DAG2      ----- -------AGL15  ----------->HVH21   --------->TOE2(3)--------->ZAT14       ---------->DOF2     -------   aaggcaagttcgtgattgtgacggtcatcggagtctaccttgaagccatggcactgccgtcaatctccgctaagtggaaaggcaagaatgcaaaggagtt  26478700                                                                 <---------AHL20(2)                                                                 --------->YAB1                                                  <---------ANAC55(2)                                <-----------RAV1(2)          <---------YAB1                             ----------->HVH21    --------->ANAC55(2)   --------->GLK1(2)        <-----------TGA1      <---------ANAC46   --------->ARR14(2)       <-----------HVH21     <---------ANAC58   <---------ARR14(2)      --------->ANAC46       <---------ANAC55(1) ------->ANAC55(2)      -------->P                <---------ANAC58 ------->ANAC46        ------>NtERF2       <---------DAG2    --------->AHL20(2) ---->WRKY38(1)       --------->DEAR3(1)   <----------DOF2   <---------AHL20(2)                ------ ---->WRKY12<----------DOF2--------->bZIP60(2)  <-----------GT1  --------->AHL20(2)         --------- -------LBD16         <---------ALFIN1 --------->ZAT18      --------->AHL20(1)              <-------- ----->MYB52(1)     ------>NtERF2      <---------ZAT14      --------->AHL20(2)             <--------- ------>HVH21       --------->LBD16    --------->ZAT14      <---------AHL20(1)            --------->ANAC46 -->At4g35610      --------->ANAC46    <---------ZAT18     --------->YAB1<----------DOF2<---------ALFIN1   gacggaatccgtccctttcttccgccaactcgtcacaggtgtacactttattacgtgctaaatataattaaaacacttttgtattcgttcacacttcaca  26478800                                      --------->AHL20(1)                                      --------->AHL20(2)                                 <-----------HVH21                                 <-----------TGA1                                --------->ANAC58                                --------->TGA1a                                --------->ANAC58                                --------->ANAC46                                <---------O2                                --------->ANAC55(1)                                --------->bZIP60(2)                                <---------ANAC55(2)                                --------->O2                        <---------ANAC46                    --------->WRKY18(1)   <-----------GT1        <-----------RAV1(1) --->ANAC46  <-----------GT1    <<<<<<<<<<HY5       <---------AHL20(2) >ZAT14   <---------ICU4        --------->ANAC55(2)<---------AHL20(2)      --------->DAG2 -ZAT14----------->GT1         <-----------STF1    --------->AHL20(2)     --------->DAG2 --HVH21 --------->ICU4----------->GT1<---------AHL20(1) <-----------GT1 ---------->DOF2   cgatttgtgtagttattacatggtcaagttaaacacgtcatatattacattttttaaattttcttctctggtgggaaaaggtgagtttgagaaattggca  26478900  Previous    Next  AGI:  At5g66220.1    Description:  chalcone isomerase. Identical to Putative chalcone--flavonone isomerase 2 (CHI2) [Arabidopsis Thaliana] (GB:Q9FKW3); similar to A11/CFI/TT5 (TRANSPARENT TESTA 5), chalcone isomerase [Arabidopsis thaliana] (TAIR:AT3G55120.1); similar to Chalcone--flavonone isomerase (Chalcone isomerase) (GB:Q9LKC3); contains InterPro domain Chalcone isomerase; (InterPro:IPR003466); contains InterPro domain Chalcone isomerase-like (InterPro:IPR016087); contains InterPro domain Chalcone isomerase, 3-layer sandwich; (InterPro:IPR016088) Range:  from: 26478403    to: 26479400    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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