Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->ALFIN1      <---------MYB52(1)     <------MYB83    --------->ATHB12         <------MYB46(1) ------>ZmHOX2a(2)          <---------TOE1(2) ------ZmHOX2a(2)           <---------TOE2(2) -------->GLK1(1)        --------->TGA1a                                                            - ------->ARR14(2)        <---------TGA1a                                                            < --------ARR11(3)        <---------ANAC46                                                          -- ->NtERF2<---------ANAC58<---------O2                                                              <- --->ANAC58             <------NtERF2                                          ------>ZmHOX2a(2)   -- --->ANAC58            ------>NtERF2                                       <---------ZAT6          <- -->ATERF1(1)      <---------DEAR3(1)                 --------->ANAC58 <---------ZAT14             -- --ATERF1(1)     <---------AtLEC2                     --------->ANAC58 --------->ZAT14             <- -->HVH21<---------ANAC58--------->O2     --------->WRKY38(1)         <---------REM1(1)            -- >DEAR3(1)      <---------MYB46(3)    <---------RAP2.6(3)             <---------ANAC46             <- -DEAR3(1)  <---------DEAR3(1) <---------REM1(1)     <------NtERF2 <---------AtMYB61     <----------DOF2   cgatctccattgggtctgtggatggcgacgtaggtgtagccgaattgaccatggccgagcaacttgccgatggtgtagtgatcgtggaagtctttggagt  26476500                                              <------MYB83                                              <---------ANAC46                                              <------MYB46(1)                                             --------->MYB46(2)                    <------NtERF2            <---------MYB46(3)                    <-----------RAV1(2)      --------->MYB111(1)           --------->ANAC58                  --------->MYB55(2)           --------->ANAC58                  --------->MYB59          <---------ZAT18                    <---------AtMYB61          --------->SPL7                    <---------MYB55(1)        <---------SPL7                     <-------GAMYB    --------->GLK1(2)                     <---------MYB46(3) -------------->AGL15                    <---------ANAC46 ---------------AGL15                 <---------DEAR3(1)                                   <------MYB46(1) --------------->AGL1                --------->SPL7                                       --------->MYB59 ----------------AGL3               <---------ARR14(2)                                 <---------ARR14(2) --------------->AG------>NtERF2    --------->ARR14(2)                                 --------->ARR14(2) ----------------AGL2           <------NtERF2--------->MYB111(2)              --------->ATERF1(1) --------------->AGL2           --------->ATERF1(1)                          <---------At4g35610 ----------------AGL1      --------->ALFIN1<---------MYB52(1)                --------->ZAT2<------MYB83 --------------->AGL3     <XXXXXXXXXXXXXXXXXXXXMIR165A/B                     --------->At4g35610 ----------------AG--------->LBD16<---------DEAR3(2)                       <------ZmHOX2a(1)   ------   agccaaaatcggtacgcttgccgcaggggatggagccggttcggcgtttggtagaggccttggtatcgatgggagtaggagcagccttggatttggtctg  26476600               <---------At4g35610            <---------At4g35610                     --------->ANAC58           <-----------RAV1(1)         --------->LBD16                    ---------->DOF2           <         <---------At4g35610          <---------ANAC46                 <---------HSFB2a(2)       ----    <---------ANAC46 ----------->RAV1(1)<------NtERF2          --------->At4g35610     ---------->DOF2 ----->HVH21--------->At4g35610      <---------LBD16--------->ANAC58------->TEIL   ---------->DOF2  -   actgcttcgtctactgctgctagcaccagtgactctaatggcggagaaacagacacccatggctctgatgaatcgagaaagttagaaaagaaaggggatt  26476700                                                                                            ------->TEIL                                                                                          <---------ZAT18                                                                                          <---------ZAT14                                                                                      ------>NtERF2          --------->CCA1(2)                                                          --------->DEAR3(1)     ---------->DOF2                                                   <---------WRKY38(1)--------->ZAT18 ---------->DOF2            >>>>>>>>>TBF1           <---------YAB1  <------MYB46(1) <------NtERF2 ---------AHL20(2)       ------------------------>ANAC81            <------MYB83  <----------ID1 ----->YAB1   ---------->DOF2                <------NtERF2 <---------ZAT6     ---------->DOF2 -------->AHL20(2)   ---------->DOF2  <------ZmHOX2a(1)<---------YAB1 --------->WRKY18(1) --------->ZAT14   aataaaagaaagagatgaaagaagaaagaagaagaagagaggaaggcagagaagattattagagttgagttggtcaaacccaaagcgccgagtgaacccc  26476800                       ------>ZmHOX2a(2)                       <---------HSFC1(2)                      <------ZmHOX2a(2)                     --------->ARR14(2)                     <---------ARR11(3)                     <---------GLK1(2)                     --------->ARR11(3)                     <---------ARR14(2)                   --------->HSFB2a(1)                   ----------->ARR10                 ---------->DOF2                ------->GAMYB               --------->ANAC58               --------->ANAC58             --------->MYB52(1)         ------>ZmHOX2a(2)                                                          <---------YAB1         =======================HOX2a_HOX2a                                       <---------ICU4        ========================HOX2a_HOX2a                                       --------->YAB1        --------->GLK1(1)                                                        --------->ICU4        <------ZmHOX2a(2)                                                        <---------YAB1       <---------ARR14(2)                                                      <---------ICU4       --------->ARR14(2)               <---------DAG2                         --------->YAB1       --------->ARR11(3)            <---------ALFIN1                         <---------YAB1       <---------ARR14(3)       <----------DOF2   *TSS                        --------->ICU4       --------->ARR14(3)       <---------DAG2    <----------DOF2           --------->YAB1       <---------ARR11(3)------>ZmHOX2a(1)       <---------DAG2         <---------YAB1      <------ZmHOX2a(1)--------->HSFC1(2)     <-----------GT1<----------DOF2<---------ICU4      =======================HOX2a_HOX2a<----------DOF2 <<<<<<<<<TBF1   <---------AHL20(2)      ========================HOX2a_HOX2a  <------------------------ANAC81 <---------YAB1           <   tccaaggaggatccccaacgaaagatccttctcactttcccactttttttgccttttcttcttctttttttttttttattattattattatctgtgtttt  26476900                                                  --------->ANAC46                                         <-----------HVH21          ------->TEIL             ---------->ID1             ------->GAMYB          <---------ICU4                  ------    <----------DOF2                    <------------AtMYB77    --------->YAB1        ---------->DOF2   --------->TOE2(3)                 <-----------GT1          --------->ICU4       ----------->HVH21 -----------GT1    <-----------GT1  <-----------GT1         --------->YAB1       <---------ANAC46  --   ttttacctttgttttgttgttatacatttctgagaattttaactgtcatttcacgaagtcaagaataatgaatttgtattttggtgtgaaagcgaagacc  26477000                                                           <---------MYB52(1)                                                          --------->LBD16                                                         --------->LBD16                                                        --------->LBD16                                                        <---------LBD16                                                    ------>MYB83              <-----------HVH21              <---------ATERF1(1)             <-----------RAV1(1)             <---------ALFIN1         ------>MYB83                       <---------ETT(1)         ------>MYB46(1)                    --------->ANAC58       <---------ALFIN1                     ----------->HVH21       --------->AtMYB61                    --------->ANAC58                                       <-      --------->MYB46(3)    <---------At4g35610   --------->AtMYB61                                <-   ----------->HVH21        --------->At4g35610 ------>NtERF2                                     <--  <---------WOX13(1)  --------->ALFIN1      --------->ANAC46      ------------>CBF              ----- --->ZAT18 ----------->RAV1(2)     --------->ATHB12 ------>MYB46(1)  <XXXXXXXXXXXXXXXXXXXXMIR865-5P-- --------->HVH21    --------->ALFIN1     <---------PCF2<---------LBD16                         ------   actgactgaccacccctgtgggatgtgggaagctccatgtttgggcccgacaccatcccccggtaagactcaattcgattcaacttcagagtttgccatt  26477100       <------------CBF      <---------AHL20(2)      --------->ATHB12                                                                             <-      <---------ICU4                                                                               <-     <---------AHL20(2)                                                                            --  --------->AHL20(2)                                                                               --  --------->ATHB51                                                                                 <- <---------YAB1       <---------YAB1                                                              <-- --------->ICU4     --------->YAB1                        --------->MYB46(3)                  <------ --------ICU4       <---------ICU4                        <------------MYB.PH3(2)             ------- -------HAHB4       -------->ATHB1                 <----------DOF2                      ------>ZmHOX2a(1) -------YAB1       --------->AHL20(2)           <-----------GT1                         ============= ---->YAB1         <---------AHL20(2)        <---------ICU4                          ------>ZmHOX2a(1) ------->YAB1      <---------ATHB51         <---------AHL20(2)                       ================ --->ICU4          --------->ICU4           --------->AHL20(2)                    <---------ATERF1(1)   atcattatttattgccactaaattattatggactctgtgtctctcatttattactttctaacaaactccatattttagtagagcctcctcctactagcct  26477200     <---------ANAC46  <----------DOF2 ------>ZmHOX2a(2) --------ARR11(3) --------AGP1                                                                  <------------CBF ------->ARR11(3)                                                             --------->ATHB12 ------->ARR14(2)                                                            <---------YAB1 --------ARR14(2)                                                      --------->TOE1(3) -------CCA1(2)                                                        --------->TOE2(3) ---ANAC46                                                       --------->TOE1(3) ---->RAV1(2)--------------->AtSPL8                              --------->TOE2(3)               <--- =======HOX2a_HOX2a                                              <----------DOF2            <-------- =======HOX2a_HOX2a                    ------------>CBF   <---------TOE2(3) <---------GLK1(2)    <---   ggatcttttgtgtattttgtactagtattcaagtccctgtcttcaatccctactcaaactgagattactttaaccttagattattggtctactaaattga  26477300                                            <---------AHL20(2)                                           --------->AHL20(1)                             <---------HSFB2a(2)      --------->ICU4                    <----------DOF2                 <---------GLK1(1)         <---------AHL20(1)                 --------->ARR14(2)    <----------DOF2          --------->HSFB2a(2)      ----------->GT1      <---------ANAC58 ------ANAC58    --------->GLK1(1)        <---------AHL20(2) --------->YAB1<---------ANAC58    <----- ----CBF        <---------ARR11(3)        <---------------AGL15<-----------GT1<---------ARR14(2) ------ANAC58   --------->ARR11(3)      <-----------TBP     <---------YAB1 <---------ANAC46 <--------   cttggtcttttcaaacaagatttccatttttctaaaacgtctatatatatttagtaatgtttataatacaatctaaggcgtatacgttttcttttttctt  26477400  Previous    Next  AGI:  At5g66210.1    Description:  CPK28 (calcium-dependent protein kinase 28); calmodulin-dependent protein kinase. similar to CPK16 (calcium-dependent protein kinase 16), calmodulin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G17890.1); similar to CPK18 (calcium-dependent protein kinase 18), calmodulin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT4G36070.1); similar to calcium-dependent protein kinase CPK4 [Nicotiana tabacum] (GB:AAL30819.1); similar to calcium-dependent protein kinase CDPK1444 [Medicago truncatula] (GB:AAX14494.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48212.1); contains InterPro domain Serine/threonine protein k Range:  from: 26473518    to: 26476850    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g66211.1    Description:  unknown protein Range:  from: 26476946    to: 26477056    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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