Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->ANAC58                  <---------PCF2                 --------->ATERF1(1)                --------->LBD16               --------->ALFIN1               <---------ANAC58               <---------ANAC58              <---------LBD16           <---------At4g35610           <---------ZAT2           ===========================RAV           --------->At4g35610           ----------->RAV1(2)           --------->ZAT2         <-----------RAV1(2)         =============================RAV                                                 <---------ZAT6       --------->WRKY18(1)----------->RAV1(1)                                 <---------At4g35610   <-------TEIL<---------ANAC46                                               --------->At4g35610 --------->ARR14(2)    --------->ANAC58                                     <------ZmHOX2a(1)      -- <-----------HVH21<---------DEAR3(1)                                 --------->YAB1       --------->ALFIN1 <---------ARR14(2)------>NtERF2    <---------ALFIN1               <-----------HVH21    <---------ANAC46   caaggtccggtccagctgcgggggctagcaacaatgcctcactggtgtctcaaattgagagcatgactctatcagagaggagcagagagggagtgtaaga  26447000                                                                                           --------->ATHB12                                                                                          --------->ICU4                                          <---------CCA1(2)                        --------->CCA1(2)                     ---------->DOF2    <---------CCA1(2)                         <---------ARR14(2)    <---------------AGL15           --------->ANAC58     <----------DOF2          --------->ARR14(2) ------->CCA1(2) ---------->DOF2    --------->ANAC58<----------DOF2      --------->HSFB2a(2) <-------   gagatgctactaagagagagaaagaaagatgtgtttgcaagcctatctctcttcctttccttttttgtgttttgtcgagaattggatatgaactgattga  26447100                                                                                                    -                                        <---------DAG2                                <----------DOF2                                 --------->At4g35610                                  --------->TOE2(3)                                 <---------At4g35610                             <------ZmHOX2a(1) <-                             <-----------RAV1(1)   <---------DAG2     <---------AHL20(2)        <----       --------->YAB1    --------->AHL20(2)        <----------DOF2   --------->AHL20(2)         <---- --WOX13(1)              --------->YAB1 <----------DOF2              <---------AHL20(2)  --------->YAB1   tactcagtctcataagaaaaaaaacaataatatgctgctcaactttttttgaacttttctggtttttaaaatttttttggataggaaactttaatagttg  26447200                                                                      <------NtERF2                                                                   --------->At4g35610                                                                   <------NtERF2                                                                   <---------At4g35610                                                             <---------ALFIN1                                                           --------->LBD16                                                           <-----------HVH21                                                           ------>NtERF2                                                          --------->ANAC58                                                          --------->ANAC46                                                          --------->ANAC58                                                         --------->MYB46(3)                  <-------                                                         <---------LBD16                     --------                                                      --------->CCA1(2)                     <--------                                                      <---------GLK1(1)            <-----------HVH21          <---------ICU4                             <---------ARR14(2)           --------->ANAC58          --------->ATHB12                           --------->ARR14(2)           <---------O2    <---------At4g35610                              --------->ARR11(3)           --------->ANAC46 -------->ALFIN1                             --------->ARR11(3)  --------->ANAC46 --------->O2  ----- --------MYB46(3)                            <---------ARR11(3)<---------ALFIN1   <---------TGA1a --MYB83 <---------YAB1 <---------YAB1 ----------->GT1--------->GLK1(1)           --------->ANAC58 --MYB46(1)   --------->ATHB12   <---------TOE2(3)   <---------ARR11(3)           --------->TGA1a----   gtgtttggctgatcattgatttagtcatccttgttaagaaaatgtaatatctgaagatacccgccactcggcagagagggtttcacgtcaaaccatatcc  26447300                                                                               --------->ALFIN1                                                                           ---------->DOF2                                                                       ------->MYC2                                                                       ------->PIF5                                                                       <-------MYC2                                                                       ------->MYC4                                                                       ------->PIF4                                                                       <-------MYC3                                                                       <-------PIF4                                                                       ------->MYC3                                                                       <-------PIF5                                                                       <-------MYC4                                        --------->ZAT2                <---------O2                                        <---------ZAT2                --------->TGA1a                                        --------->ZAT14               <---------TGA1a                                        <---------At4g35610           ===============================          --------->ZAT18               <---------ZAT14               ================bZIP_DOF   <--- --ARR14(2)                --------->At4g35610                        ================bZIP_DOF   <--- ->ARR14(2)                <---------ZAT2                             =============================== -CCA1(2) --------->At4g35610           --------->At4g35610           --------->O2          <-------- ---->ANAC46               --------->ZAT2   ----------->HVH21       <------------OsbHLH66  <---------ANAC58 ----->LBD16               <---------At4g35610                      <---------ALFIN1       <---------ANAC58   gaaatactagagagctctaaattgaaaacagctggctatctcagcagtgacataccattccttcactcgtccacgtgcaaagtgggcatgttggctttac  26447400                                       ----------->GT1                                       <----------ID1        ========================================MADS_MADS                                   ---------        <---------------AGL15   <---------------AGL15                                      --------->HSFB2a(2)    ------->TEIL               ----------------->AGL1                                      <---------HSFB2a(2) =======bZIP_DOF               <-----------------AGL1                                     <---------LBD16 ------DAG2--------->YAB1     -------->P                       ------>NtERF2             --------->MYB52(1) -------DOF2                 <-----------GT1               <---------DEAR3(1)           <-----------GT1 =======bZIP_DOF ------------>CBF     ----------->GT1--------->YAB1                  <---------MYB46(3) --DOF2 <----------DOF2     *TSS--------------->AGL15<---------ANAC46        --------->LBD16---------   tttatgtatgctttaataagacaatttgaagttaccagagaaggaaaaaaaactgtcgtaatcggcgctaatgggcttccgagacatttgttaccggaaa  26447500                                                                              <---------ANAC46                                                                             <---------MYB52(1)                                                                           <-----------RAV1(1)                      --------->ANAC46                                  <-----------GT1                      --------->LBD16                              <---------ANAC46      --------->DAG2 <---------HSFB2a(2)                           <---------ANAC58     ---------->DOF2 <-----------RAV1(2)                           <---------ANAC58               <-- >ANAC46          <---------ARR14(2)                      <----------DOF2 <------------AtMYB77    <-- >LBD16           --------->ARR14(2)           <---------CCA1(2)   <---------AtLEC2<-----------GT1<--   catcacaaaaagcttaagcagttccaggcactcttctcccttctctgatatatctgattccttttttttgcttgtaactgttgtgtaacgagactgtgtt  26447600                                                                         <------MYB83          ---------->DOF2                                                <---------DEAR3(2)     <---------YAB1                                                     <---------DEAR4(1)     ----------->GT1                                           --------->ALFIN1   --------->YAB1                                          <---------ANAC46 <---------TOE1(2)         --------->DAG2                --------->CCA1(2)<-------GAMYB <---------TOE2(2)        ---------->DOF2               ----------->HVH21<------MYB46(1)          --- -------ANAC46          --------->CCA1(2)           <---------ANAC58    <---------DREB2C(2)     ----- -------ANAC58       ----------->GT1                <---------ANAC58    <---------DEAR3(1)      <---- -------ANAC58    --------->ALFIN1                --------->ALFIN1 <------ZmHOX2a(1)  ---------->DOF2   tcgtatgatgaaaaaagaaggtggagataaaagtgaagatggactgcgaagggtgcgagagacgggtgaggaagtcggtggaaggcatgaaaggagtcag  26447700            <------ZmHOX2a(2)                           --------->ZAT2                  --------->ANAC58           --------->ARR14(2)                        ------->GAMYB                      --------->ANAC58           <---------ARR14(2)                       --------->MYB46(3)    --------->ALFIN1       <-----------HVH21                           ------>MYB83           ----------->HVH21       ---      --------->DEAR3(1)                    <-------TEIL<---------ZAT2 <---------MYB46(3)         <--    <---------At5g28300       --------->MYB52(1)   ------>MYB46(1)<-------TEIL     ----------->HVH21 ------->DOF2 --------->TOE2(3)           --------->ARR14(2)   <---------MYB46(3)--------->At4g35610- ---->At4g35610<---------------AGL15      <---------ARR14(2)  <---------DEAR3(1) <---------At4g35610< -----At4g35610------>ZmHOX2a(1)  <-----------HVH21-------->P --------->ALFIN1  ------->TEIL     <---   caaagtcaccgtcgatcctaaacagagcaaactcacggtcgagggattcgtccaaccgagcaaggtggtgcatcgggtgatgcatcggacagggaagaag  26447800              --------->ANAC55(2)              <---------ANAC58                             --------->ANAC46           <---------SPL7                                 --------->SPL7          <----------DOF2                               --------->TOE1(2)    --------->ALFIN1                             <-------PIF5    <-----------RAV1(1)     <---------AtMYB61    ------->PIF5  --------->At4g35610       --------->ALFIN1--------->ANAC55(2)                    <---------ANAC46  <---------ZAT2            <---------DEAR3(1)  --------->ZAT2                     <---------ANAC58  --------->ZAT2       <---------TOE1(1)    --------->ANAC46                       <---------ANAC58  <---------At4g35610  <---------TOE2(1)    --------->ANAC58                 ------>ZmHOX2a(1) --------->ARR14(2) <---------SPL7          --------->ANAC58             <---------ALFIN1 <---------ARR14(2)<---------DAG2        <---------MYB52(1)--------->ANAC58  --------->LBD16 <------- ------>ALFIN1<---------ANAC55(2)<------NtERF2  <---------ZAT2          --------->ATERF1(1)  -------- -------DEAR3(1) ------->TEIL<---------MYB46(3) ----------->RAV1(2)     <------NtERF2        -------- -------->ATERF1(1)<---------MYB59<---------ALFIN1<-----------RAV1(1)  <---------ATERF1(1)---------->DOF2 ------NtERF2 <---------ANAC58  ------>NtERF2  ------->TEIL--------->ANAC58----------->RAV1(2) ------LBD16 --------------->AtSPL3 <---------ALFIN1  ------>NtERF2   --------->PCF2  <-------TEIL  -   gcggagctgtggccttacgtaccttacgaggtggtgccacacccttacgcacctggtgcctacgacaagaaggcccctcctggttacgttcgtaatgcac  26447900  Previous    Next  AGI:  At5g66100.1    Description:  La domain-containing protein. similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G35890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23265.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA-binding protein Lupus La (InterPro:IPR006630) Range:  from: 26444715    to: 26447232    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g66110.1    Description:  metal ion binding. similar to ATFP6 (FARNESYLATED PROTEIN 6), metal ion binding [Arabidopsis thaliana] (TAIR:AT4G38580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43162.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) Range:  from: 26447428    to: 26448138    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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