Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                             --------->LBD16                                        -                                       <---------ANAC58                                             <                                       <-------GAMYB                                             <---                                       <---------ANAC58                                          <---                                      <------MYB83                                              <----                                      <---------MYB46(3)                                     --------                                     --------->MYB59                                     <-----------HVH21                                     <---------AtMYB61                      <---------GLK1(1)<-------   <---------WOX13(1)     <-----------GT1   <---------ANAC46      --------->ALFIN1      --------->ALFIN1 ---------YAB1      <---------AHL20(2)<------MYB46(1)          <------ZmHOX2a(1) <-----------HVH21---   atatgatagacataccacttgttttatttttctctgtgtttggttgccgtagaagagcattactaggagaggggatggaaatgtgtcaaggtgtgagatg  26444300                                                                                                    x           --------->ARR14(2)                                                                       x           <---------ARR14(2)                                                                      xx      --------->ANAC58                                                                             xx      --------->ANAC58                                                                            xxx     --------->WOX13(1)                                                                           xxx  <-----------HVH21                                                                              xxxx ------>MYC2                                                                                     xxxx -------MYC2                  <-------GAMYB                                        --------->RAP2.6(2) ------>MYC3             <---------YAB1                                            ----------->RAV1(1) -------MYC3           --------->YAB1                                    --------->ANAC55(2)    xxxxx ------ANAC58         <---------YAB1                      <<<<<<<<<MYB98 <---------ANAC58       xxxxx ------ANAC58  ------>ZmHOX2a(1)             ------>ZmHOX2a(1)           <---------ANAC58      xxxxxx ---TEIL  --------->GLK1(1)  <---------MYB46(3)           <---------MYB52(1)     ------>NtERF2 xxxxxx ->At4g35610 <---------ANAC58--------->MYB111(2)         <-------GAMYB   <---------ANAC55(1)  xxxxxxx --At4g35610 <---------ANAC58--------->MYB55(2)         --------->ANAC46 <---------ANAC46 <---------AHL20(2) ---->TEIL<---------GLK1(1) <--------P       <----------DOF2           --------->MYB52(1) --------->AHL20(2)   catgtgtcaagcatttcctgtcttatcatggttgttgttgttgtgtcctttgttttctccgttactcacatactaacgtgttcggccacaaattaaaaaa  26444400              xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(le3)                         <-----------GT1 xxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->GLK1(2)                   <-------TEIL xxxxxxxxxxxxxxx>smallRNA(le3)                  --------->ARR11(3)      --------->AHL20(2) xxxxxxxxxxxxxxx>smallRNA(si3)                  <---------ARR11(3)     <---------ATHB12 xxxxxxxxxxxxxx>smallRNA(le3)              ----------->GT1 --------->TOE2(3)  <---------ANAC58 xxxxxxxxxxxx>smallRNA(si3)          --------->YAB1    <---------AHL20(2)     <---------ANAC58   aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcaattagaagagaaaatctttttaatcttatcccctaatgaattacttggtacatgtagaatag  26444500                                                  --------->bZIP60(2)                                                  ================bZIP_DOF                                                  --------->O2                                                  --------->ANAC58                                                  <---------TGA1a                                                  --------->TGA1a                                                  --------->ANAC46                                                  --------->ANAC58                                         <---------YAB1                ----------->GT1      <---------AHL20(2)   ----------->GT1             <------ZmHOX2a(1)      --------->AHL20(2)   ----------->GT1          <-----------RAV1(2)       <---------AHL20(2) ---------->DOF2                     --------->At4g35610     <-----------GT1      --------->ANAC46       <-------TEIL                   --------->TOE2(3)   <   aatcaaattactacaggaggcttaataaacacaacttataaatttgataggcacgtcaaaagttaaaacagggatttgttaacctcagtaattagctacg  26444600                                      <------MYB46(1)                    <---------At4g35610    <---------ANAC58                    --------->At4g35610    <---------ANAC58                    ----------->GT1   <------MYB83                 <---------ATHB12   <---------WOX13(1)                ------>MYB46(1)    <---------ARR14(2)                ------>MYB83       <------------CBF               --------->WOX13(1)  --------->ARR14(2)                 --------->ANAC46      <---------AHL20(2)        --------->ANAC55(1)            --------->ZAT6      --------->AHL20(2)        --------->ANAC58             <-----------GT1   <------MYB83   --------->MYB52(2)           --------->ANAC46             --------->MYB52(1)<------MYB46(1)   ----------->GT1<-----------RAV1(2)<---------AtMYB61    <---------ANAC55(2) <---------AtMYB61   --------->MYB46(2)           --------->ANAC58          --------->ANAC55(2) <---------DEAR3(1) <--------P<-----------GT1      --------->ANAC55(2)     <---------AHL20(2)  <-------GAMYB -------GAMYB--------->MYB46(3)<---------LBD16    ----------->GT1  <---------REM1(2)            -----   agggttagttaattaaccaatcaggtgaaatcacacggattggtagcgagaggggtatttaagtaactgtacaaggagcgttggtgtttgtttgtttgca  26444700                                            <---------MYB46(3)                                         <---------ANAC46                                       --------->LBD16                                      --------->DEAR3(1)                                      --------->DREB2C(2)                                     --------->ATERF1(1)                                     --------->DEAR3(2)                                     <------NtERF2                                    ------>NtERF2                                    <---------ATERF1(1)                                    --------->MYB52(1)                                   --------->DEAR3(1)                                   <---------ALFIN1                                  <---------ABI4(2)                                  --------->MYB46(3)                                  --------->ATERF1(1)               *TSS              <---------ATERF1(1)         <---------At4g35610           --------->ANAC58    <------ZmHOX2a(1) <---------At4g35610                             <---        <------NtERF2          --------->ATERF1(1) <----------DOF2                               <---     <------ZmHOX2a(1)        <---------ATERF1(1)--------->At4g35610                           <-----  <-----------RAV1(2)   --------->MYB52(1)<-------GAMYB  <----------DOF2     <<<<<<<<<TBF1     <----- ----->DOF2--------->ANAC58  --------->ALFIN1 <---------MYB52(1)          <<<<<<<<<TBF1   <----------DOF2   aagggcaggaggcacacaagtcttccaaacggaggagccaccggcgttgttagctttctctttggctgattccttcttcttcttctctaattcttttcct  26444800                       <---------GLK1(2)                      <---------At4g35610                                    <---------ANAC46                      --------->ZAT2                                        <------NtERF2                      <---------ZAT2                            --------->RAP2.6(3)                    <---------ALFIN1                           --------->ATHB12          <---------YAB1   <----------DOF2                  <---------ANAC55(2) ------TOE1(2)     --------->LBD16 ------>ZmHOX2a(1)        --------->ANAC55(2)          <---------MYB52(1) ------TOE2(2)<---------ICU4     ===========================HOX2a_HOX2a    ------>NtERF2<---------At4g35610 ----ANAC58   --------->YAB1     ------>ZmHOX2a(2)      <-----------HVH21 <---------DEAR3(1)       -- ----ANAC58--------->YAB1  --------------------->WRI1------>ZmHOX2a(1) ----------->HVH21------>NtERF2   tggtttcagagtataataatccccagcttctttgatcctctctctctctctcttcctctgttacatgatggctacgacggcgagtagtgccgctaattct  26444900                                               <---------ARR14(2)                                       --------->MYB52(1)                                     <-----------TGA1                                     <-----------HVH21                                    --------->TGA1a                                    --------->ANAC58                                    --------->ANAC58                                    <---------TGA1a                                    --------->bZIP60(1)                                    --------->ANAC55(1)                                    --------->TGA2(1)                                    --------->ANAC55(2)                                    <---------ANAC55(2)                                    --------->O2                                    =================================MYC_MYB                                    --------->ANAC46                                    <---------bZIP60(1)                                    --------->bZIP60(2)                                    <---------O2                                    ==================================MYC_MYB           ------->GAMYB                                   <-----------STF1             <-----------GT1   <---------ARR11(3)                                 =========================HOX2a_HOX2a             --------->ARR11(3)                                 <------ZmHOX2a(2)            <-------GAMYB      --------->YAB1                       <---------CCA1(2)       --------->ARR14(2)               <---------ATHB12                     ===================HOX2a_HOX2a          <---------MYB46(3) --------->ICU4<------                     ------>ZmHOX2a(1)----------->HVH21     <--------P         <---------TOE1(2) ----->TEIL   <---------ATHB12  <-----------HVH21  ------>ZmHOX2a(1)   <---------YAB1 --------->At4g35610   gcatctcgcttctccattgattcctctatctcgcgatcacgtcacggcgattcctctccctggttgttaccttctgattcccatgatcatccgactcttt  26445000                                               --------->LBD16                                             <---------LBD16                                            --------->MYB52(1)                                    ---                                           <---------ALFIN1                                       <--                       --------->At4g35610--------->MYB46(3)                                  ------>ZmHOX2a(1)                       <---------At4g35610<---------MYB55(2)                                ---------                     ---------->CDC5    ------>NtERF2<-----------GT1                       ------>ZmHOX2a(1)             <------ZmHOX2a(2)          <---------ATERF1(1)                             <---------ATERF1(1)            --------->ARR14(2)         --------->ANAC46                              <---------HSFC1(2)        <------ZmHOX2a(1)   --------------------->WRI1                               --------->HSFB2a(1)     <---------HSFB2a(2) ------>NtERF2 <---------ALFIN1                              <---------HSFB2a(1)     --------->HSFB2a(2)--------->DEAR3(1)--------->DEAR3(1)                <---------YAB1<---------ALFIN1 ----DOF2   <---------ARR14(2)         --------->DEAR3(1)          --------->ANAC46  --------->HSFC1(2)   ccctctcccaggacgatcccttctcagcgccttcggtctccccgcccaccggaaataactcttccgactacgacaatgctgataagaagcctcctcctgt  26445100                                                           ----------->RAV1(2)                                                         --------->GLK1(2)                                                         <---------ARR14(2)                                                         --------->ARR14(2)                                                      --------->DEAR3(1)                                                     <------NtERF2                                                     --------->RAP2.3(1)                                                    --------->LBD16                                                    <---------ATERF1(1)                                                   --------->RAP2.3(3)                                                   --------->ATERF1(2)                                                   --------->RRTF1(3)                                                   --------->RAP2.3(2)                                                   <---------ATERF1(2)                                                   <---------DEAR3(1)                                                  --------->RRTF1(1)                                                  --------->RAP2.3(1)                                                  --------->ERF1                                                  <------NtERF2                                                  --------->ORA47(2)                                                  --------->RAP2.6(1)                                                  --------->DEAR3(2)                                                  --------->ATERF1(1)                                                  --------->DEAR4(2)                                                  <---------ABI4(2)                                                 <---------RAP2.3(1)                                                 <---------RRTF1(1)                                                 <---------DEAR4(2)                                                 <---------ATERF1(1)                                                 ------>NtERF2                                                 <---------RAP2.6(1)                                                <---------DEAR3(1)                                        <-----------HVH21<---------ARR11(1)                                   <------NtERF2--------->PCF2  <---------ANAC58                                 <---------RAP2.3(3)--------->ABI4(1)                                 <---------DEAR3(1)--------->RRTF1(2)                                 --------->ETT(1)<---------ORA47(2)                                 <---------RAP2.6(2)--------->At4g35610      <----------DOF2   --------->HSFB2a(1)           <---------DREB2C(2)------>NtERF2  --------->At4g35610   <---------HSFB2a(1)          --------->DDF1 <---------PCF2------>ZmHOX2a(1)    --------->At4g35610 ------>HSFB2a(2)               --------->RAP2.6(3)--------->DEAR3(1) xxxxxxxxxxxxxxxx>smallRNA(s) -------HSFB2a(2)        ------>ZmHOX2a(1)     --------->ZAT18  <---------ANAC58  <---------At4g35610 -->RAV1(2)    <---------YAB1  <-----------HVH21<---------RAP2.3(2)<---------At4g35610   ctggaacatgccttcttctaatagctcctccgatgtcggccctgtcatgggcgccgccgaatcctggcctgctctctctctttctgctcgctcttcttcc  26445200  Previous    Next  AGI:  At5g66090.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO23263.1); contains domain Adenine nucleotide alpha hydrolases-like (SSF52402) Range:  from: 26442962    to: 26444398    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g66100.1    Description:  La domain-containing protein. similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G35890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23265.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA-binding protein Lupus La (InterPro:IPR006630) Range:  from: 26444715    to: 26447232    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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