Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------SPL7                                                                 --------->ORA47(1)                 <                                                                 ------>NtERF2                     <-            ------>ZmHOX2a(1)                                    <---------RAP2.6(3)     ----------->RAV1(1)          ----------->RAV1(2)<---------ZAT18                   --------->ATERF1(1)      --------->DEAR4(1)       <---------At4g35610   --------->ZAT18                   <------NtERF2            --------->DEAR3(1)      <---------ANAC58      ----------->HVH21                  --------->RAP2.3(1)      <---------ETT(1)      <---------ANAC58 --------->TOE2(3)          --------->ARR11(3)  --------->TOE1(1) --------->At1g77200 ---------YAB1         --------->TOE2(2)          <---------ARR11(3) ------>ZmHOX2a(1)  --------->DREB2C(2) ----->ARR14(2)       ----------->RAV1(2)     --------->MYB52(1)--------->DEAR3(1)     --------->DEAR3(2) ---->ARR14(2)       -------->P           <---------TOE2(3)   <---------ATERF1(1)    <---------WRKY38(1) -----GLK1(2)    --------->ANAC58   ------>ZmHOX2a(1)         ------>NtERF2 --------->ANAC46--------- -----ARR14(2)   --------->ANAC58   <---------------AGL15    --------->ANAC46      <-----------HVH21-   ttcttcttgcgctcctgcttcgcaacctgagtgacctccttatcaaggtaagggtcttcgaagacgccgtcctcgtagacgagacagtcaccgacaatga  26436300             <---------LBD16            <---------ANAC46            <---------LBD16           <------NtERF2        <------NtERF2       --------->LBD16       <---------ATERF1(1)       ------>NtERF2      --------->RAP2.6(2)      --------->DEAR3(1)      --------->ATERF1(2)      <---------ATERF1(2)      --------->ANAC46        <---------HSFB2a(2)     <---------LBD16  ------>ZmHOX2a(2)   --------->DEAR3(1) ==========================HOX2a_HOX2a                   --------->ZAT14 ---------ICU4      <-----------ARR10                              --------->ANAC58 --------ATHB12     <---------ARR14(2)                             --------->ANAC58               --- ------------>WRI1  --------->ARR14(2)    ---------->DOF2        ---------->DOF2          ---------->DOF2 -------->YAB1     <------ZmHOX2a(1)     <------ZmHOX2a(1)  --------->ALFIN1  <---------ZAT14    ----   aatcatcgccggcatcggggaggatcgacgtttgagaagaataggaaagagaccgtaatcgagtggggaaagcaagggagtgaagagagggagaaagacg  26436400                                         --------->ALFIN1                                       <---------ANAC46                                       <---------ANAC58                                       <---------ANAC58            <---------LBD16          <---------ANAC46                          ------->GAMYB           <---------ANAC46         --------->ALFIN1               --------->ARR11(3)           <---------HSFB2a(2)    --------->ALFIN1                 --------->GLK1(2)        --------->ARR14(2)        <---------ANAC46                --------->YAB1                    -        <---------ARR14(2)      <---------ANAC58                 --------->KAN4(1)         ------>ZmHOX2a(1)        --------->GLK1(2)       <---------ANAC58                 <---------KAN4(1)        *TSS    <-- ------>MYB52(1)                <---------ANAC46                <---------KAN4(2)   <----------DOF2-- ------->HVH21               <---------AtMYB61         <----------DOF2      --------->MYB52(1)  -----   agacggagaggttctggggagaagaagagagatggtgtgtggggtggagagtgactgcattatcggaataatcttgaataacggagctttctcctctcct  26436500        <---------At4g35610     <------NtERF2    <---------ATERF1(1)    ------>NtERF2    --------->ORA47(1)   <---------ATERF1(2)   --------->ATERF1(2)   --------->DEAR3(1)  --------->ATERF1(1)   ------------>CBF <---------ATERF1(1)  <---------ETT(1)       XXXXXXXXXXXXXXXXXXXX>MIR841B*                      ----- -------->ANAC46      --------->ANAC46      <----------DOF2                                  ------>ZmHOX2a(1) -------ALFIN1     --------->ARR14(2)    <---------ALFIN1                              --------->SPL7 ---->ZmHOX2a(1)   <---------ARR14(2)   <------NtERF2                                 <---------MYB52(1) ->ZmHOX2a(1)<---------REM1(1)------------>CBF          <----------DOF2     ----------->HVH21<-------   cctcgccggcctctgatgtagtatccgacaatttcaatgggcctcactttctaatgggccttacttaaacatatgggcctgacttcccgttcgtcctttg  26436600                                                                                    <------ZmHOX2a(2)                                                                                   <---------ARR14(2)                                                                                   --------->ARR14(2)                                                                                   <---------AGP1                                                                                   <---------ARR11(3)                                                                                   <-----------ARR10                                                                                  <---------ARR14(1)                                                                                  <---------CCA1(2)                                                                                 <------NtERF2                                                    <---------ZAT14 ------->TEIL --------->LBD16                                                 <---------At4g35610<---------ARR14(2)                                                 --------->At4g35610--------->GLK1(2)                                                 <---------ZAT2     <-----------ARR10------>ZmHOX2a(2)               --------->ANAC46                 <-----------RAV1(1) --------->ARR14(2)   <---------YAB1         -------->P                            <---------RAP2.6(2) <---------GLK1(2)<---------GLK1(1)    --------->WOX13(1)                    <-----------RAV1(1) <----------DOF2   --------->RAP2.6(2)  ------------>CBF                      <------------CBF <---------At4g35610   <---------LBD16 ---->ATHB12--------->ANAC46        --------->ANAC46<---------At4g35610       ------>NtERF2 ---DOF2<-----------GT1     --------->AHL20(2)<---------At4g35610  <---------CCA1(2)--------->GLK1(1)   attagtcaatctaccagacaccacgagtaagaaaataaactccattgttgctgctgctctgcttctttcgaatctcgctcggccggatctcatccttgtt  26436700                                                ------>ZmHOX2a(1)                                    --------->ZAT2            ----------->HVH21       <---------At4g35610          <---------ANAC58          <---------ZAT2                                          <--------          <---------ANAC58          --------->At4g35610                                     <--------     --------->ATHB12           ------>ZmHOX2a(1)                                        <----------DOF2     -------->HAHB4             <-----------HVH21          ------->GAMYB             <---------ZAT18     <---------ICU4     --------->YAB1      <---------ARR14(2)                       --------->ZAT18    --------->ICU4     <---------HSFC1(2)   --------->ARR14(2)                  <---------ICU4      <  --------->YAB1       <---------HSFB2a(1) <---------GLK1(1)                 --------->YAB1 <-------- --------->ICU4     <------ZmHOX2a(1)      --------->GLK1(1)                --------->ICU4  ---------   gcaaaaatgatggcgagaccgaggaatcatcgtccttcagctcggaaatcctcgcattcaacgctcgtcttcgccgtattgatcatgtccactttcgtga  26436800                                                                  --------->ARR11(3)                                                          --------->ANAC58                                                        ---------->DOF2                                                     ------>ZmHOX2a(1)                                                  <------ZmHOX2a(2)                                                 <---------GLK1(2)<---------ARR11(3)                                                 <---------ARR11(3)                                                 --------->ARR14(2)                                                 <---------ARR14(2)                                   --------->ANAC58  ======================HOX2a_HOX2a -ANAC58                           --------->ANAC46 --------->TOE2(3)                         <------ -ANAC46            --------->GLK1(1)          --------->LBD16   --------->YAB1               ------- ---------YAB1      <---------GLK1(1) ----------->RAV1(1) --------->ANAC58                   <------- -ANAC58      <----------DOF2      --------->ANAC58------>ZmHOX2a(2)------>ZmHOX2a(2) ---------->DOF2 >ANAC55(2)  <---------DAG2    ------>NtERF2 <---------LBD16    <---------ATHB12    --------->LBD16   ttttgattcttctcgcctttggaattctctcggtgcccagcaacaatgccggatcctcaaaagccaatgatctcacttctattgtccgaaaaacacttca  26436900                                                       ----------->GT1                                                     ------>ZmHOX2a(2)                                                    <------ZmHOX2a(2)                                                   <---------ARR11(3)                --------->ANAC58                   <---------ARR14(2)             --------->LBD16                --------->ANAC58                   --------->ARR14(2)           --------->HSFB2a(2)      <-----------GT1--------->ICU4                --------->ARR11(3)           <---------LBD16   <-- ---ZAT14  ------>MYB46(1)               --------->ZAT18                 <----------DOF2 --------->ALFIN1 -->ZAT14--------->AtMYB61               <---------ZAT18      <---------DAG2    <---------HSFB2a(2) ----HVH21 ------>MYB83   <---------AHL20(2) <----------DOF2  <----------DOF2<-----------GT1<--------   gaggtaagataccatcccatgccaatattgaatttcaatttagtgtgcttcaagatcgggttaacttttccttctcttttttcccgtagaagtggcgaag  26437000                      ----------->GT1                                                             <--                    <-------GAMYB                                                           <--------                   <---------ANAC46                                                         ---------                   <------MYB46(1)                                                      -------------                  --------->MYB55(2)                                                    -------------                  <---------MYB46(3)                                                  ------>MYB83---    ---------->DOF2<------MYB83                  --------->GLK1(2) <---------ANAC58   ------>MYB46(1) -------YAB1    <---------MYB52(1)            <---------ARR11(3)   <---------ANAC58 <---------MYB59 -ANAC46       <-------GAMYB                --------->LBD16--------->TOE2(3)    ----------->HVH21 <--   atgattcaaagaacgagcgttgggttgaaataatctcttgggaacccagagcttctgtttaccacaatttcttggtgagcctatgacctatccatataca  26437100     <---------DAG2     <----------DOF2                                                                    <---------ANAC58  <-----------GT1                                                                       <---------ANAC58 -------ARR14(2)                                                                   <-------MYC3 -ARR14(2)            <XXXXXXXXXXXXXXXXXXXXMIR399D                                 ------->MYC3  ---- >ARR14(2)    ------>ZmHOX2a(1)                                                    <-------MYC2 <---- ---->AGL2  <-----------------AGL1                                                 ------->MYC2 ----- ---->AGL3<-----------GT1<---------ARR14(2)                                       --------->ANAC58 ------>ARR14(2)     <XXXXXXXXXXXXXXXXXXXXMIR399F                 <---------YAB1  --------->ANAC58  - -------GLK1(2)     ----------->GT1          <-------TEIL        <-----------GT1 <---------TOE1(2) <-   gatttgactttttttcctcccttggtaaatctgttttggctcccatattcatcttctctatctgtattttcaatgtattcttgcacgtttccttgagaga  26437200  Previous    Next  AGI:  At5g66055.1    Description:  AKRP/EMB2036 (EMBRYO DEFECTIVE 2036); protein binding. Identical to Ankyrin repeat domain-containing protein, chloroplast precursor (AKRP) [Arabidopsis Thaliana] (GB:Q05753;GB:Q3E852;GB:Q8GYN6;GB:Q940Y0); similar to EMB506 (EMBRYO DEFECTIVE 506), protein binding [Arabidopsis thaliana] (TAIR:AT5G40160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24573.1); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 26434382    to: 26436490    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g66060.1    Description:  oxidoreductase, 2OG-Fe(II) oxygenase family protein. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G17720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42933.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 26436707    to: 26438156    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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