Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      ---------->ID1                            ------->GAMYB                <----------DOF2                             >>>>>>>>>>AtWER            ------>MYB83                                   --------->MYB52(1)                     <--            ------>MYB46(1)                           <---------YAB1     ---------->DOF2          <--            -------->P  --------->TOE1(1)        --------->MYB52(2)--------->YAB1               <----          --------->AtMYB61                    <---------MYB52(1)  ----------->GT1            -------         --------->MYB46(3)       <---------CCA1(2) --------->YAB1<---------YAB1            <-------- >DOF2  >>>>>>>>>MYB2  ------>ZmHOX2a(1) <---------ANAC46<---------MYB52(2)              <---------YAB1   accacttgaaaaccaaccctttgtcctcgttccctcatctcttctgtgtgttagttataactaacggtatcataaaaaagaagaagacttgatgactgat  26416100                                                                         --------->GLK1(1)                                                                         <---------GLK1(1)                                        --------->ZAT14               <------MYB46(1)                                        <---------ZAT14               <------MYB83                 <-       ---------->DOF2                 --------->ALFIN1             <--------P                     -- ----MYB83                         <---------YAB1                  <-------GAMYB           <---------ALFIN1 ----MYB46(1)                  <---------ANAC58               <<<<<<<<<MYB98         <---------ARR14(2) -----WOX13(1)            --------->At4g35610               <---------TOE2(3)        --------->ARR14(2) -->ATHB12                <---------At4g35610     --------->LBD16<---------TOE1(3)  <---------CCA1(2) -WOX13(1)   <------ZmHOX2a(1) <---------ANAC58  <---------LBD16 <---------TOE2(3)--------->YAB1 ----   tggtgtttagaaagaggaagagagagagagcttacttacgagtgtagaaaccctggatttttaagttagggttggaaaccctcatcatatccaacactct  26416200                                                                                                    -                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                             --------                                                                                             --------                          ------>NtERF2                         ---------->DOF2            --------->CCA1(2)                     ------>NtERF2                       --------->GLK1(2)     ---------->DOF2    ---  <---------YAB1    <---------ALFIN1      --------->GLK1(1)  --------->At5g28300        ----------->ARR10 --------YAB1    --------->ANAC46         <---------GLK1(1) ----------->GT1   <------ZmHOX2a(1)  ---- ------->ICU4    <---------ETT(1)--------->DAG2      --------->YAB1 <---------------------WRI1   ---- ----->YAB1    <-----------GT1  ---------->DOF2----------->RAV1(1)--------->DAG2      <------ZmHOX2a(1)   catgatcaatgtggtttttccgacaccctgcccaaaaagtattgaaatccaacaatgagaaactgtaaaaggcgatgagaggaaagcaggaagataagca  26416300                                                                                          --------->AtLEC2                                      <---------ANAC58                                    ------>MYB83                                      --------->ATERF1(1)                                 ------>MYB46(1)             --------->At4g35610      <---------ANAC58                                  --------->AtMYB61      <------ZmHOX2a(1)              <---------ATERF1(1)                 <---------------AGL15   <-----------RAV1(2)               --------->ABI4(2)                  <-----------------AGL2 -------->ZAT18----------->HVH21     ------>NtERF2           <------MYB46(1)         --------->ANAC46 -------ZAT2 <---------At4g35610   <---------MYB52(1)        <------MYB83--------------->AGL15 ------>At4g35610            <---------ARR14(2)            <---------ANAC46          --------->ANAC58 -------At4g35610           --------->GLK1(1)            <---------MYB46(3)          --------->ANAC58 ->ANAC58    <---------ATERF1(1)  --------->LBD16       <---------MYB52(1)       <-----------HVH21 ->ANAC58   <---------MYB46(3)   --------->LBD16       <-------GAMYB    ----------------->AGL3 ------>ZAT2<---------DEAR3(1)  <---------LBD16       <---------MYB46(3)----------------->AGL1 ----->ANAC58----------->GT1<---------GLK1(1)        ----------------->AGL1  --------->YAB1    <----- ----->ANAC58<---------DEAR3(2)<---------LBD16       <-----------------AGL1 <---------ATHB12   ------   agctcacaggagggccggtgacaagaaggcatttcccggtgcctgccattttctggccgttgttggtaatagtagccaataagggtcacaccatccaaat  26416400                                                               *TSS                                                        ------>ZmHOX2a(2)                                                      <---------ARR11(3)                                                      <---------ARR14(2)                                                      --------->ARR14(2)                                                      --------->ARR11(3)                                                     <---------At4g35610                    ------>ZmHOX2a(1)       ------>MYB83<---------YAB1       <---------ZAT14<------ZmHOX2a(2)              <<<<<<<<<TBF1       ------>MYB46(1)                 <---------HSFB2a(2)     <------------CBF  <---------ANAC58 ----ARR14(2)  <---------ANAC58        --------->HSFB2a(2)   <---------YAB1      <---------ANAC58   < --->ARR14(2)  <---------ANAC58  <---------ARR11(3)  --------->At4g35610        ---------->ID1  -----   ccaagtaccatccatttgcttacgattacagtcaatttcttctggactgctattcagatccctctgattgtgcctaaaatttggcttcttcttcctccac  26416500                                                                         --------->DAG2                                                                        ---------->DOF2                                                                      --------->YAB1                                                                  --------->ICU4                                                                <----------DOF2                                                              <------NtERF2                                  <-----------TBP             --------->At4g35610                                <-----------TBP              --------->RAP2.6(2)                    <      ---------->DOF2    <----------DOF2         --------->AHL20(2)  <---------YAB1        <--------- ---------ARR11(3) <---------MYB111(1)           <---------AHL20(2)--------->YAB1       <-----------GT1 ---->ANAC46       --------->MYB46(3)       <------NtERF2   <---------RAP2.6(2)   <------NtERF2  <---   aagaccattaaagtctgtccaactactctttgcgatatatatgggcctcatttaaactttgggccgctataatgaaaagttggcctcatttaacttttga  26416600                                                    <---------YAB1                                                  <----------DOF2                                                --------->At4g35610                           <------              <----------DOF2             <---------ANAC58                        <---------AHL20(2)    <---------AHL20(2)                    <---------ANAC58                       <---------AHL20(1)   --------->AHL20(2)              <---------AHL20(2)       <------NtERF2        <---------ARR11(3) ---------RAP2.6(3)                --------->AHL20(2)--------->YAB1              --------->AHL20(1) -DOF2    --------->PCF5    <---------At4g35610 <------NtERF2                 <---------RAP2.6(3)  <- ------At4g35610            --------->At4g35610--------->RAP2.6(2)    <----------DOF2      <---------   gccgatataatggtcccttttaaaattttgagctcatttaaatttcgggccgctataatggcctcatttgaactttgggccgatatatttggcccagatg  26416700                   <---------AHL20(2)                  --------->ARR11(3)             --------->LBD16                                                                       <-         --------->ARR14(2)                                                                       ---         <-----------HVH21                                                                       <---         <---------ARR14(2)                                                                      ----       --------->LBD16                                                                           ----      <---------ANAC58                                                                         ------      <---------ANAC58                                                                --------->ANAC46     <-----------------AGL1                                                         --------->TOE1(2)     <---------LBD16                                                              ------->TEIL <-----   <-----------GT1<---------AHL20(1)                                            ------->GAMYB-------- ---ARR11(3)<---------LBD16       <-----------GT1     *TSS                     <---------MYB52(2)<--- --------AHL20(2) <---------ARR11(3)    <----------DOF2                        --------->MYB46(3)---- --RAV1(2) <---------LBD16       <-----------GT1    --------->MYB46(3)  <---------HSFB2a(2)  --------   tttattttccgggtccgggatatatttagggctattttccccctttgtgatgcaacgacttgaattttctcattctcgacaacgaaccagggaacaagaa  26416800                                          <-----------ARR10                                          --------->ARR14(2)                                  <---------------AtSPL8                                  <---------------AtSPL3                                 <------------------SPL14                               <-----------HVH21                              --------->bZIP60(2)                              <---------At4g35610                              --------->ANAC58                              <------MYB46(1)                              --------->ANAC58                              <------MYB83------->TEIL                            <-----------RAV1(2)                           <------NtERF2  <---------ARR14(2)                           --------->ATERF1(1)                          <---------RAP2.3(1) <---------ANAC46         ------>NtERF2   --------->AGP1 ----------HVH21         <---------RAP2.3(2) ------>DEAR3(1)         <---------ATERF1(2) ------HSFB2a(1)         <---------RAP2.6(2) ----->DEAR3(2)          <---------RAP2.3(3) ----->HSFC1(2)          --------->ATERF1(2) --->ARR14(2)            <---------DEAR3(1) ------>ZmHOX2a(2) ----ARR14(2)           --------->RAP2.6(3)<------ZmHOX2a(2)                  --------->AHL20(2) ->ANAC58         --------->ARR11(3)      <---------AGP1                ============================= ------HSFC1(2)   <---------ARR14(3)      --------->ARR11(3)            --------->ANAC58 ----->MYB46(3)   --------->ARR14(3)  ------->TEIL                      --------->ANAC58         <--- ->ANAC58         <---------ARR11(3)  <---------LBD16                   ------>ZmHOX2a(2)    <-------   ccgtcgtggtcgaaaacgaagaccttggcggcaggtcatgtacggatctagggggtatgtattcttacattcgatcgccatttattctactggatttatt  26416900                                                                            --------->GLK1(2)                                                                            --------->ARR14(2)                                                                            <---------ARR14(2)                                                                     <------ZmHOX2a(1)                                                              <---------ANAC46                                                            <------MYB83    <---------AGP1                                                            ----------->GT1 --------->ARR11(3)                                                            <------MYB46(1) <---------ARR14(3)             <------MYB83                                  --------->MYB46(2)           <---------YAB1             <------MYB46(1)                               <---------MYB46(3)           <---------ATHB51         --------->ATHB12                                  --------->MYB55(2)  --------->HSFB2a(2)      <---------ANAC58                        <------ZmHOX2a(1)      ===============HOX2a_HOX2a      <---------ANAC46                --------->ARR11(3)   --------->MYB111(2) <---------HSFB2a(2)      <---------ANAC58                --------->ARR14(3)   <---------DEAR3(1)<------ZmHOX2a(2) ------>ZmHOX2a(1)                    <---------ARR14(2)   --------->MYB111(1)------>ZmHOX2a(2) <-----------RAV1(1)                  --------->GLK1(2)    <---------AtMYB61<---------ARR11(3) =======HOX2a_HOX2a                   <---------ARR11(3)  <--------P ================HOX2a_HOX2a --------GT1 ----------->GT1          <---------ARR14(3)  <---------MYB55(1)--------->ARR14(3) --AHL20(2)<---------WOX13(1)<-----------RAV1(1)         <-------GAMYB     <------ZmHOX2a(1)  <------   ttcctgttgcctgattggtattaatcgatttgtgttggaaaatcttgaggaatttagagggttggtgtataggaagaggatctggaatcgattattgtca  26417000  Previous    Next  AGI:  At5g66005.1    Description:  Expressed protein. similar to hypothetical protein OsI_009623 [Oryza sativa (indica cultivar-group)] (GB:EAY88390.1); similar to Os03g0130700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048856.1); contains InterPro domain Protein of unknown function DUF265; (InterPro:IPR004948) Range:  from: 26414965    to: 26416463    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g66010.1    Description:  RNA binding. similar to RNA binding [Arabidopsis thaliana] (TAIR:AT3G20890.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70556.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 26416754    to: 26418225    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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