Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <---------ICU4                                                           --------->ATHB12                                                           -------->HAHB4                                                           --------->YAB1                                                     <------ZmHOX2a(1)                                                     --------->YAB1                                                   <---------TOE1(3)                                                   <---------TOE2(3)                                               --------->CCA1(2)     <---------TOE2(3)          -----                                       <---------At4g35610--------->ICU4                    <--------                                       <---------LBD16  --------->YAB1 <------ZmHOX2a(1)    ---------           ---------->DOF2             --------->At4g35610<---------YAB1             --------->ZAT6-- --------->HVH21                <---------ANAC46 --------->CCA1(2)<----------DOF2    --------->ANAC46   catgaccctgtggcaaagttattcagtactaaatgtgtgtaagcggaagagataaggataatgattacctttaggatgacaagtttcacactagggtcct  26396100                                      ----------->GT1                                 --------->CCA1(2)                                 <------ZmHOX2a(2)                                >>>>>>>>>GATA-4                                >>>>>>>>>GATA-2                                --------->ARR14(2)                                <---------ARR14(2)                                --------->ARR11(3)                                <---------ARR11(3)         <---------MYB52(2)     --------->AGP1                      --------->ANAC58        --------->ANAC58        >>>>>>>>>GATA-3                     --------->ANAC58        --------->ANAC46        >>>>>>>>>GATA-1                    <---------ZAT18 ->ZmHOX2a(1)  --------->At4g35610------>ZmHOX2a(2)    --------->ANAC58 -ZAT18 --------->ANAC58 <---------ATHB12              --------->ANAC46                <---------KAN4(2) >ARR14(2) ------------>AtMYB77--------->GLK1(1)       --------->ANAC58------->TEIL----------->GT1 ---->ZmHOX2a(1)     <---------At4g35610   --------->AHL20(2)    <---------SPL7   ----------->GT1   cctcaaatgcaaggaacagttgcagcaatcgagagatctacagaaaaaaatgagtctaagccaatacagtacgcatgtacaagaagggaaatattcgata  26396200                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                             <-------                                                --------->GLK1(2)                         <---------YAB1                            <---------AtMYB61  <---------GLK1(2)                          <---------AHL20(2)                     <---------At4g35610       <---------ARR11(3)                     --------->YAB1                     <---------ZAT2 --------->ZAT14                                  <---------YAB1        <------ZmHOX2a(1) <----------DOF2    --------->ICU4  <---------GLK1(1) --------->TOE1(2) ------->MYC3        --------->At4g35610<---------ZAT6  <<<<<<<<<TAC1          --------->TOE2(2) <-------MYC3        --------->ZAT2 <---------ZAT14   --------->ZAT6     --------->AtMYB61--------->AHL20(2)   ccatgtggaaggacagagcattcagctgctttggtctgtttagtgtcaagattctaacactcgatttctcttccaccaaaacctgtgatcatattattaa  26396300                                        --------->ANAC46                            <-------TEIL--------->ANAC58                           --------->ARR14(1)                          --------->ARR11(1)                          <---------ARR14(2)                                                        <                          <---------GLK1(2)                                                         <                          --------->ARR14(2)          --------->TOE1(2)                             -                        <---------TOE1(2)     ---------->DOF2                                      <- ----AHL20(2)           <---------TOE2(2)   --------->ANAC58                                       -- -->AHL20(2)            ----------->ARR10   --------->ANAC58                                      --- ---AHL20(2)         <---------ANAC46   --------->ANAC58                                       <----- --YAB1           ------>ZmHOX2a(2)---------->DOF2   ----------->RAV1(2)             <----------DOF2-   ttcagagagcgaagaattgatcgtcgtagattcggattaaagacgcaagaaagagacctgagactgagaggccatctcgactgccatctttcttactggt  26396400                                                                    --------->ARR14(2)                                                                    --------->ARR11(3)                                                                    <---------ARR14(3)                                                       --------->MYB52(1)                                                       <---------ICU4             <---------GLK1(1)                     --------->ZAT6   --------->ARR14(3)           <---------CCA1(2)                       <---------------AGL15       <----------DOF2                             --------------->AGL15  <-------TEIL                                    <-----------------AGL1 --------->ARR14(1)                               <-----------------AG ---------GLK1(2)                                 ----------------->AGL3 ---------ARR14(2)                                <-----------------AGL3 -------->ARR14(2)                                ----------------->AGL2 --------At4g35610          --------->At4g35610   <-----------------AGL2       <----------CDC5 ------->At4g35610        =====================HOX2a_HOX2a          <---------ARR11(3)            <-- -------->ARR10 <---------LBD16                   ----------------->AG      --------->MYB46(3)  ----- ------HVH21------->TEIL  <------ZmHOX2a(1)     <-----------GT1     <-----------ARR10    <------ZmHOX2a(1) -------->ARR11(1)--------->LBD16       <------ZmHOX2a(2)    *TSS   --------->GLK1(2)  <---------TOE2(3)   cagattcgcctttgtatctccggagagaggagcagcaatgggatcagaaattaccactaatggctaacaaaatcttcacccgcttagtttaggaagttga  26396500                              -------->HAHB4                              --------->YAB1                              <---------ICU4                             <---------ATHB51                             --------->ICU4                           --------->YAB1                     <------MYB46(1)                     <---------MYB46(3)                     <------MYB83          --------->YAB1 --------->AHL20(2)                           <----------DOF2     <----------DOF2<---------AtMYB61                                <---------ANAC58 ----------CBF     <---------MYB52(1)       ----------->GT1          <---------ANAC58 ---->ARR11(3)   <-----------RAV1(1) <----------DOF2             <----------DOF2       ---------->DOF2   tattgggccttatagtaatctgttggttttaataatgggctttattttgttaatagagcaaatggaactttgcttttcaaactcaatttcaaagccctct  26396600                                                                                                  ---                                                                                                -----                                                                                                -----                                                                                             <-------                                                                                            -------->P                                                                                            ------>MYB46(1)                                                                                            =========                                                                                            ------>MYB83                                                                                          ===========                                                                                          ------->GAMYB                                                                                          --------->AtMYB61                                                                                         --------->MYB46(3)                                                                                         <---------MYB55(2)                                                                                        -------->P---                                                                                        =============                                                                                       --------->MYB52(1)                                                                                      ------->GAMYB                                                                                     <---------MYB55(2)                                                                                     <---------MYB46(2)                --------->YAB1                       ------->MYC3                    <---------MYB111(2)           <---------YAB1                            <-------MYC3                    <---------MYB111(1)      <---------ANAC58                       <---------MYB52(1)      <------ZmHOX2a(1)===============      <---------ANAC58                <---------------AtSPL3       --------->MYB59   --------->MYB46(3)    <---------YAB1      --------->AHL20(2)  --------->TOE2(3)    <<<<<<<<<MYB98      <---------MYB52(2)   tgcaacatgcttgatgaatgagaagattatatgtttttatcgagtacgttagacatgtgttttttttgttaggaagctagttttccaactaaccaacacc  26396700                          <---------At4g35610                          <------NtERF2                         ----------->RAV1(1)                       <---------ZAT18                       --------->ZAT18                       <---------PCF2                   ------->MYC3                   <-------MYC2                   <-------PIF5                   <-------MYC3                   ------->PIF5                   <-------MYC4                   ------->MYC2            ---------->DOF2                   ------->MYC4         --------->AHL20(2)                  <---------TGA1a   --------->ATHB12                  --------->TGA1a   --------->YAB1                  ====================================bZIP_DOF                  <<<<<<<<<<HY5  --------->WOX13(1)                  --------->O2 <------ZmHOX2a(2)      --------->YAB1--------->ALFIN1-------->ATHB1 --->MYB83        <---------O2<---------ARR11(3)                          <---------HSFB2a(2) ---->DEAR3(1)    <---------ANAC55(2)--------->TOE2(3)              <---------ALFIN1 ---->AtMYB61    ------------>OsbHLH66<---------YAB1               --------->MYB46(3) --ALFIN1--------->AHL20(2)   --------->AGP1                      -------->P---------->DOF2 ===========================MYC_MYB <---------ICU4               ------->GAMYB ===========================MYC_MYB <--------HAHB4              --------->MYB46(3) --->MYB46(1)  ---------------->PIF3(2)--------->AHL20(2)       <---------MYB55(2)               ---- ===========================MYC_MYB<---------ATHB12             <---------MYB111(2)      ---------->DOF2 ===========================MYC_MYB--------->ICU4       <---------GLK1(2) --------->HSFB2a(2)  <-----   tccctctagcataaaatgacacgtgggcaccagatcaatcattaaaaaagtcttcaaaaattctcaacaaccacttctaaaagtcagacatgaaagccct  26396800                                                          ----------->RAV1(1)                                                       --------->ANAC46                                                       --------->ANAC58                                                       --------->ANAC58                                                      ------->MYC3                                                      <-------MYC3                                                      <-------MYC2                                                      ------->MYC2                                                 --------->ANAC58                                                 <---------ANAC46                                                 --------->ANAC58                                              ----------->HVH21                         --------->CCA1(2)                                            ==========================RAV              --------->ARR11(1)            ----------->GT1<-------TEIL  --------->MYB46(3)                            <---------ARR14(2) ----->ANAC46            <---------ARR14(2) ----------->RAV1(2)                        --------->ARR14(2) ----ATERF1(1)           --------->ARR14(2)--------->GLK1(2) ------->GAMYB  ---------->DOF2       <--   cgcctctcgatatatagataatttgcatatacatgaaaactcaacaatctgacgcatatgcaacagagttgaaagatggaaagagcaaggatacgatggc  26396900                                                                                       --------->At4g35610                                                                                    <---------At4g35610                                                                                    --------->At4g35610                                                                                <-----------RAV1(1)                                                                                --------->ALFIN1                                                                              <---------At4g35610                                                                              <---------ZAT2                                                                              --------->At4g35610                                         <---------ANAC58                     --------->ZAT2                                         <---------ANAC58                <-----------RAV1(2)        <                         <---------At4g35610               <----------DOF2  <------ZmHOX2a(1)       -         <------ZmHOX2a(1)               <---------ANAC46  <---------DAG2<---------LBD16            - --------->ALFIN1        --------->At4g35610            --------->GLK1(2)===================RAV  <--- ----NtERF2   --------->MYB59  ---------->DOF2       ----------------------->TaNAC69(2)<---------At4g35610   cgagtggaagaggaattaggctgaggcagaagacaaagagactgcgtgcgagagtgagaagctttttcaggcttctcaggagctggtgctgcagaaggcc  26397000  Previous    Next  AGI:  At5g65940.1    Description:  CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1); 3-hydroxyisobutyryl-CoA hydrolase. similar to 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative [Arabidopsis thaliana] (TAIR:AT2G30660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62703.1); contains InterPro domain Crotonase, core; (InterPro:IPR001753) Range:  from: 26393836    to: 26396461    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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