Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------NtERF2                                                                                             ------>NtERF2                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                           --------->ATERF1(1)                                                                                           --------->RRTF1(1)                                                                                           --------->ERF1                                                                                           --------->RAP2.6(1)                                                                                           --------->ORA47(2)                                                                                           --------->RAP2.3(1)                                                                                          <---------At4g35610                                                                                          --------->LBD16                                                                                          ------>NtERF2                                                                             --------->HSFC1(2)                                                                             <---------HSFC1(2)                                                                      ----------->RAV1(1) --------->ABI4(1)                                                                      --------->MYB52(1)  --------->At4g35610                 --------->ZAT2                                      --------->AtMYB61    <---------ATERF1(1)                 --------->At4g35610                                 ------->GAMYB       --------->ANAC46                 <---------ZAT2                                     --------->MYB46(3)   --------->DEAR3(1)       --------->ANAC55(2)                                          <---------MYB55(2)  <---------LBD16      <---------TOE2(3)           ------>ZmHOX2a(1)                -------->P--------->HSFB2a(1)      <---------TOE1(3)   <---------ATHB12                  ----------->GT1  <---------HSFB2a(1)     <-----------RAV1(2)--------->GLK1(1)         <<<<<<<<<TBF1   ------->GAMYB <-----------GT1 -------->GT1    <---------At4g35610          <---------ARR11(3) --------->MYB46(3)   --------->ARR14(2)   gggtatttcaggtaattccagctcagaaatcatctccttcaaatccaatttcttcttctcatcggtaacaaccaccagaaatttcccatctccgccgcca  26382800                                  <---------GLK1(1)                                  --------->CCA1(2)                                 --------->ARR14(2)                                 --------->ARR11(3)                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                          --------->ARR11(3)                          --------->AGP1                          <---------ARR14(2)                          <---------ARR11(3)                          <---------AGP1    --------->DEAR3(1)<---------ZAT14 -ATERF1(2)          --------->ALFIN1 >RRTF1(3)         <---------ANAC46               ------>MYB83 >ANAC46<----------DOF2  <---------CCA1(2)        ------>MYB46(1) >DREB2C(2)       ------>NtERF2  --------->ARR11(1) >ATERF1(2)      --------->DEAR3(1)              <---------ALFIN1 >RRTF1(2)    ------->GAMYB--------->CCA1(2)     --------->MYB55(1) >RAP2.3(3)   --------->DEAR3(1) <---------ARR11(3) >DEAR3(1)   --------->DEAR3(2)  <---------ARR14(2)   <---------MYB52(1) >RAP2.3(2)  --------->MYB46(3)<---------TOE2(3)<---------MYB55(2)               --------->AHL20(2) < >RAP2.6(2) <---------At5g28300----------->ARR10--------->MYB46(3)     --------->ATHB12  ---------->DOF2   agaacaccgtctttaaccgccgagtgtagatctaagatatgcccatcaaacccaccgttcttagaaggctgaaacattggcattttaaaaacaaagtctt  26382900                                                         <---------ICU4                                                         -------->HAHB4                                                         --------->YAB1                                                        --------->ICU4               <---------YAB1 <                                                        <---------YAB1             --------->ATHB12 -                                                        <---------ATHB51          <---------YAB1   <-                                                      <---------ICU4            <---------ANAC55(2)--                                                      --------->YAB1            --------->ANAC55(2)--                                                     --------->ICU4        <---------ICU4         ---           <----------DOF2                           <---------YAB1       <---------YAB1   <---------ANAC58     <---------ANAC58         ----------->GT1   --------->ANAC55(2)     --------->YAB1  <---------TOE2(3)     <---------ANAC58       --------->DAG2      ----------->GT1<---------ZAT14 <-------TEIL<---------ANAC58 <<<<<<<<TBF1              ---------->DOF2      --------->YAB1 <---------At4g35610--------->ICU4 <---   tcttcttccttgcctttaaaaacgagtcaaaaaggaaactttcaactctctcgtaataataatggagcagtgtatcataaatacatgattaatgcttccc  26383000                      --------->KAN4(2)                     <---------MYB46(3)       --------->MYB46(3)  --------->At4g35610--------->HSFB2a(1) -------PIF5         <---------KAN4(1)                       <---------LBD16 ------>PIF5         --------->KAN4(1)              --------->TOE2(3) --------ZAT2--------->ARR14(2)                     --------->TOE1(3)                  ------->TEIL ------->ZAT2<---------ARR14(2)                   ------->TEIL                  --------->AHL20(2) --------->RAV1(2)   <---------HSFB2a(1)        <---------ZAT18               ----------->GT1 --->NtERF2 <---------GLK1(2)          --------->GLK1(2)  --------->ARR11(3) --------->DAG2 ------ALFIN1--------->GLK1(2)        <---------GLK1(2)  <---------GLK1(1)  ---------->DOF2         -   cacctgctaaccaagaatctggattgttccaagagtttcagaatcgatagtgaaccttgaaatctcggaacagaacaaaaaagtaaatgaatttgtgaga  26383100                                                               <---------ANAC46          ---------->DOF2                                                             <---------ANAC58        <---------ICU4               ----------->TGA1                              <---------ANAC46        -------->ATHB1               ----------->HVH21                             <---------ANAC58       <---------ATHB51             --------->At4g35610                        <---------MYB46(3)          --------->ICU4<--             <---------At4g35610                      <---------ANAC58              --------->AHL20(2)           <-----------RAV1(2)           <------ZmHOX2a(1)<---------AtMYB61         <---------AHL20(2)   <---------TOE2(3)        ---------->DOF2           <---------ANAC58<---------ANAC46 <---------YAB1 -------->AHL20(2)   ------->TEIL <------ZmHOX2a(1)  <---------MYB46(3)        ----------->GT1-------   aatttaagaatacccagatgacgaatttgtgaaagaggaagaaggagaagagaattggttgtggtgtgtgtttcggtgagaaggaaattattaaagcaaa  26383200                   --------->HSFB2a(1)                   <---------HSFB2a(1)                  <-----------GT1              <---------------AtSPL8               <----------DOF2      --------->AHL20(2) <----------DOF2      <-----------GT1      <---------AHL20(2)*TSS               <---------ARR11(3)         ----------->GT1 --------ID1--------->DAG2                 --------->ARR11(3)      <---------ANAC46--------->DAG2 --->DOF2  ---------->DOF2                 <---------GLK1(2) <----------DOF2      ---------->DOF2   gagacaaattaaaaaaagggaacgtttcttttggtttggaccaaagattttctctttttcactctttttgctgggaaaaaactaaaaagcagacaaaaac  26383300                                                                                        <---------ZAT2                                                                                        --------->ZAT2                                                                                        <---------At4g35610                                                                                        --------->At4g35610                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                                                  <-------PIF4                                                                                  ------->PIF4                                                                                  ------->MYC2                                                                                  <-------MYC4                                                                                  <-------PIF5                                                                                  <-------MYC2                                                                                  ------->MYC4      <                                                                                  <-------MYC3<------                                                                                  ------->MYC3-------                                                                                  ------->PIF5<------                                                                                 --------->O2 -------                                                                                 <---------TGA1a-----                                                                                 <---------O2 -------                                                                                ------------>OsbHLH66                             <---------RVE1(1)                                 <---------ALFIN1======                            --------->ARR11(3)                               ----------->RAV1(1)-----                            <---------GLK1(2)                                <---------ALFIN1 <------                            <---------ARR11(3)                               ========================                       -------->ZAP1 --------->ANAC46                     --------->ANAC46   <-------                     <---------WRKY18(1)                                  --------->ANAC58  ---------                    --------->WRKY12 --------->ANAC58                     --------->ANAC58  ---------                    --------->WRKY38(1)         <-------GAMYB    <---------ETT(2)--------->TGA1a=====                 <---------YAB1      --------->ANAC58       <---------CCA1(2)--------->DEAR3(1)<-----             <---------GLK1(2)   <-----------GT1===========================================MYC_MYB---   ccaaaaaaaaacacagattatgttgaccgagatttttacaggctatagccggttatcaactcatctctcgacccatgcgccacacgtgcaagctcagatc  26383400 ----------->GT1 ---------TOE2(3) ---ARR11(3) -->ARR11(3) ---GLK1(2) -->ARR14(2) ------>RAV1(2) -->AGP1 ============================HOX2a_HOX2a ->ZmHOX2a(2)                                                                                     --- ---ARR14(2)                                                 <---------AHL20(2)                   --- =======RAV                                                  --------->AHL20(2)       <---------ARR11(3) --At4g35610                 <---------WRKY18(1)   <---------At4g35610                --------->AHL20(1) ------>ANT                 ----------->HVH21      --------->At4g35610                --------->ARR11(3) -->ARR10                 <---------ANAC58     <----------DOF2     <---------TOE2(3)  <---------AHL20(1) ============================HOX2a_HOX2a------->TEIL         --------->AHL20(1)      <---------AHL20(2) -ZmHOX2a(2)              <---------ANAC58  XXXXXXXXXXXXXXXXXXXXX>MIR853         <---------AHL20(2) --->ZmHOX2a(1)       ------>ZmHOX2a(1)<-----------GT1      --------->AHL20(2)   --------->AHL20(2) -   ctgaggttaaatacccattttgtccttggcttgacccatatgtacccatctttagctaaaaaaaaaattgaggtgttttttttttaaatatttttagacc  26383500                                                        --------->ZAT14                                                        <---------ZAT14                                                --------------->AGL15                                                <---------------AGL15                                               <---------ANAC46      --------->ARR11(3)                       <---------ANAC58      <---------ARR11(3)                       <---------ANAC58    <---------AHL20(2)                      XXXXXXXXXXXXXXXXXXXXX>MIR828 --------->YAB1                           <-----------RAV1(1)                     <---------ICU4 --->MYB46(1)                         <---------ARR11(3)--------->ZAT18       --------->AHL20(2) --->MYB83                            --------->ARR11(3)<---------ZAT18       <---------AHL20(2) -------->AHL20(2)               --------->AHL20(2)---------->DOF2          <----------DOF2   aaataataaatcttcatattgattttgtgttccattgaaatatcatgttgcttaaaagagcactctcttgggtcttccctttaatttttgctactgaaat  26383600                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                  <--                                                                                               ------                                                                         <----------DOF2       <-----                   --------->DAG2                     <---------REM1(1)  ============================     ----------->GT1                          >>>>>>>>>>GT-3b    <---------YAB1         ---------->DOF2  --------->ALFIN1---------->DOF2          ----------->GT1   ----------->GT1            =============   cgatgtgttgtcaaaaacaataaagtattatctcagtaaattaagaagaaaaatagatgaagggggtattatggtcttttagacgatgagcaaagaaaat  26383700  Previous    Next  AGI:  At5g65920.1    Description:  U-box domain-containing protein. similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G49810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17685.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) Range:  from: 26381241    to: 26383224    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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