Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                --------->ALFIN1                                            <---------ANAC46                                 <-------GAMYB                                    ------>ZmHOX2a(2)                                       <--------                                   <------ZmHOX2a(2)                                        ------>ZmHOX2a(2)                                  --------->ARR11(3)                                        ---------                                  <---------ARR11(3)                                        =========                      <---------DOF5.7(2) --------->ZAT14                           --------->ICU4                     <---------WRKY12<-------GAMYB --------->ATHB12                 <---------YAB1 --------AtMYB61     <---------WRKY38(1)  <---------ZAT14       <-----------GT1  <---------YAB1   tttggtctaaattagagaggttgtcaacgtctataagatcgttgtgaagtgtttgattagtggtttttgcctctctggttctcgtgattatcgatcgttg  26375000                                                 -------->HAHB4                                                 <---------AHL20(2)                                                 --------->ATHB12                                                 --------->ATHB51                                                 <---------ICU4                                                 -------->ATHB1                                                <---------ATHB51                            ---------                                                --------->ICU4                             <---------ATHB12                             <-------TEIL       <---------YAB1                    --------->GLK1(2)                           --------->ARR14(2) --------->YAB1                     <---------GLK1(2)  < -MYB46(3)                 <---------ARR14(2)<---------YAB1                    ----------->ARR10  --- >MYB52(2)     <------ZmHOX2a(1)         ----------->GT1                     --------->CCA1(2) ------ =====================HOX2a_HOX2a       <-------TEIL                ------>ZmHOX2a(2)    --------->WOX13(1)   tatatatagatgaactaggactatttgcagattcaattgaaattcgtataattattggttttagatgtgatctaatgagataagattctatcaatcaaaa  26375100   <---------ANAC58   <---------ANAC58                                     <---------At5g28300   <---------ANAC55(2)                                 <-----------GT1   --------->ANAC55(2)                             --------->TOE2(3)  --------->MYB52(2)                              <---------ICU4 >YAB1                                            --------->YAB1 ---------MYB52(1)             --------->YAB1    <---------ATHB12 <---------WOX13(1)      <---------- -------->GT1                  --------->TOE2(3)------>MYB46(1)--------->ICU4       <------MYB83  <-- ------>MYB.PH3(1)           ------->TEIL       ------>MYB83   <---------YAB1       <------MYB46(1)   ccgttacttatcgtcttaatttgttcgaatgaatcttaatctcacaaaccaaacattataccgtcttaattgaactggaatttgttcggtttttacaaat  26375200                                                                                                  <--                  <---------At5g28300                                                             <--                 <-----------GT1                                                                  <--           --------->TOE2(3)                                                                      <--          --------->YAB1                                                                         <---          <---------ICU4                                               <------MYB46(1)       <-------         <---------ATHB12                                              <------MYB83          --------        ------>MYB46(1)                                               --------->MYB59        <-------        ------>MYB83                                                  <---------AtMYB61      --------      <---------MYB59 <---------MYB52(1)                  <---------MYB59                    -------- -GT1 --------->AtMYB61                                  --------->ANAC46          <---------AHL20(2) -------YAB1 --------->AHL20(2)             ----------->GT1         <---------MYB52(1)  ----------->HVH21   atgagagaccaaacattatataccgttttattcaagttgtgagagattgtaaattgtagacccaatttcggtttggtttagctattgaatttgacagctg  26375300                                                                                                   --     ---------->DOF2                                                                               -- -------ANAC58                                                                              --------- -------ANAC46                                        --------->LBD16                   <------ZmHOX2a(2) -------AtLEC2                                       <---------LBD16                    <---------RVE1(1) -------ANAC58                                       <---------ANAC46                  --------->ARR11(3) ---NtERF2                        --------->ANAC58   <---------ANAC55(2)               <---------ARR11(3) --ZAT2                       <-----------GT1    <----------DOF2           --------->YAB1 <----------DOF2 ->At4g35610            --------->At5g28300    --------->ZAT18<---------AHL20(2)       --------->AGP1 --At4g35610           ----------->GT1    ---------->DOF2     --------->AHL20(2)      <---------GLK1(1) ->ZAT2               --------->ZAT6------------>CBF --------->ANAC55(2)  ----------->GT1------>ZmHOX2a(2) --->RAV1(2)      <----------DOF2 --------->ANAC58  <---------LBD16<------------CBF   --------->GLK1(1)   gcatggataaagaacaattactttacagtaattaacaagtcaataaaagggcattacgggaaatttaaatattgaaatgaaaatagagagatctttataa  26375400                                                       --------->ANAC55(2)           --------->At5g28300                         <---------ANAC55(2)          ----------->GT1                              --------->ANAC46      ----------->HVH21                  <---------ARR14(2)      ----------->TGA1         --------->ZAT14        <-------TEIL                                 -- ------->TOE2(3)               <---------ZAT18      <---------ARR14(2)                          ----- ------->TOE1(3) ----------->GT1*TSS     --------->ARR14(2)         <---------MYB52(1)   <---------GLK1(1) -->TBP  <---------ANAC46--------->TOE2(3)          --------->ARR14(2) <---------YAB1    --------->GLK1(1)   accctaatgtgacggtaaacagtaatacattagaacactctcgaattcgaagaaaatacgtagcaaaacccttatttttgaatttcagacgaattccgat  26375500                                     <---------ANAC46                                    --------->ATERF1(1)                                    --------->RAP2.3(1)                                    <------NtERF2                                   <---------ORA47(2)                                   <---------RAP2.3(1)                                   <---------ERF1                                   ------>NtERF2                                   <---------ATERF1(1)                                  <---------RAP2.3(3)                                  <---------ATERF1(2)                                  <---------RRTF1(3)                                  --------->ATERF1(2)                                  <---------ANAC46                                  <---------DREB2C(2)                                  <---------DEAR3(1)                                  <---------RAP2.3(2)                                  <---------RAP2.6(2)                                  <---------RRTF1(2)            --------->CCA1(2)          <---------ARR14(2)     <---------LBD16               <---------ARR14(2)          --------->ARR14(2)--------->ARR14(2)                 --------->ARR14(2)          --------->GLK1(2) <---------ARR14(2)           --------->GLK1(2)     --------->YAB1    <----------DOF2                   <---------ARR14(2)        --------->LBD16 ------->TOE2(3)    --------->ARR11(3)                <---------ANAC46  ----------->RAV1(1) ---->GLK1(1)       <---------ARR11(3)    --------->YAB1 --------->ARR14(2)  <-------TEIL   ttcttaatcaaaaatccgataagagctttggatttggcggcgaataagaaaacatggcgaatttggatatggagcaacattcatccgaaaacgaagagat  26375600                                                       <------NtERF2<---------ARR14(2)                                                      --------->ANAC58      --------->YAB1                                                      --------->ANAC58     <---------ATHB12          --------->YAB1    --------->CCA1(2)        --------->ATERF1(2)   <------ZmHOX2a(2)  -------    >>>>>>>>>TBF1---------->DOF2 ------->TEIL---------->DOF2     >>>>>>>>>TBF1            <---------bZIP60(1)   taagaagaagaagcataagaaaagagcgagagacgaagctaagaaactaaagcagccagcaatggaagaagaacccgatcatgaagatggtgatgccaaa  26375700                                                                       <---------YAB1                                                                       --------->ICU4                                                                     --------->YAB1                                                                    --------->ICU4                                                                <---------ARR11(3)                                                                <---------ARR14(2)                      --------->ARR14(2)                        --------->ARR14(2)                <---------TOE2(3)                               --------->ARR11(3)             <---------WOX13(1)        >>>>>>>>>TBF1     <---------ANAC58           --------->MYB52(2)       >>>>>>>>>TBF1        <---------ANAC46                    <-------        --------->TOE2(3)        >>>>>>>>>TBF1>>>>>>>>>>GT-3b ----------->ARR10              --------       ----------->GT1<---------ARR14(2)  >>>>>>>>>TBF1  <---------ANAC58        <------ZmHOX2a(1) --->DOF2<---------MYB52(1)   >>>>>>>>>TBF1----------->GT1 --------->ALFIN1     <----------ID1  -----   gagaacaatgcgttaattgacgaagaaccgaagaagaagaagaagaagaaaaataagaagcgtggagatactgatgatggagaggacgaagcggtagcag  26375800                                                   <---------ARR11(3)                                                   --------->ARR14(2)                                                   --------->ARR11(3)                                            <---------ANAC46                                            <---------ANAC58                                        --------->ZAT2                     ----------->GT1    --------->At4g35610                    >>>>>>>>>TBF1       <---------ZAT2    ----------->TGA1           >>>>>>>>>TBF1        --------->DAG2     <---------ARR14(2)      --------->DEAR3(1)>>>>>>>>>>GT-3b <---------At4g35610                     --------->At4g35610   ------------------------>ANAC81    --------->REM1(1) <---------ICU4     <---------ZAT6       ----- --At4g35610  >>>>>>>>>TBF1 --------->AHL20(2)   ----------->ARR10  <------ZmHOX2a(1)        -------- ->At4g35610------------------------>ANAC81 <---------ANAC58<---------------------WRI1 >>>>>>>>>TBF1 ---->At4g35610  >>>>>>>>>TBF1 ---------->DOF2--------->ALFIN1     <----------ID1  --------->At4g35610   aagaagagccgaagaagaagaagaagaaaaataaaaagctacagcagcgtggagatactaatgacgaagaggacgaagtgatagcagaagaagaagagcc  26375900  Previous    Next  AGI:  At5g65890.1    Description:  ACR1 (ACT DOMAIN REPEAT 1). similar to ACR3 (ACT Domain Repeat 3) [Arabidopsis thaliana] (TAIR:AT1G76990.5); similar to ACR3 (ACT Domain Repeat 3) [Arabidopsis thaliana] (TAIR:AT1G76990.4); similar to ACR3 (ACT Domain Repeat 3) [Arabidopsis thaliana] (TAIR:AT1G76990.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO23919.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) Range:  from: 26372135    to: 26375092    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g65900.1    Description:  DEAD/DEAH box helicase, putative. Identical to DEAD-box ATP-dependent RNA helicase 27 (RH27) [Arabidopsis Thaliana] (GB:Q9SB89;GB:O49530); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT3G18600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67997.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/RNA helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Range:  from: 26375432    to: 26378669    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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