Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    -                                             --------->ARR11(3)                                     -                                             <-----------ARR10                                      -                                             <---------ARR14(2)                                     -                                             --------->ARR14(2)                                    <-                  --------->At4g35610        --------->GLK1(2)                                 <-----     --------->AHL20(2)                      <---------ARR11(3)                      --------->MYB52(1)  --------->WOX13(1)          --------->ANAC58          --------->WRKY12             --------->YAB1<- ----CCA1(2)      <---------At4g35610       <---------GLK1(2)                 ----------->HVH21<----- --ICU4        ---------->DOF2--------->ANAC58      <---------YAB1          ----------->GT1 <--------P   tcttcaattaaaccccaaacagctccaaattgacgcattttactaagaatcttcaccattgacttatacacttcgatactgtgacaataacgaggttgct  26358600     <-----------RAV1(2)   <------NtERF2  ------>NtERF2--------->GLK1(2)  --------->ABI4(1) --------->ATERF1(2) --------->DEAR3(1) <---------ATERF1(2) --------->RAP2.3(3) --------->RAP2.3(2) --------->RAP2.6(2)                                                                               -- -------->ATERF1(1)                                                                        --------->LBD16 -------->ORA47(2)                                                           --------->ETT(1)<------- -------->RAP2.3(1)                                                          <---------DEAR3(1)<----- -------->DEAR4(2)          <---------GLK1(2)                              <-----------HVH21 -------- -------->ERF1 --------->ARR14(2)     --------->GLK1(1)                  --------->LBD16 <---------LBD16 --------ATERF1(1)          --------->ARR14(2)                         <---------LBD16  --------->MYB52(1) ----ANAC58    <---------ARR14(2)     --------->At4g35610            -------->P  --------->GLK1(1)<-- --------RAP2.3(1)      --------->TOE2(3) --------->ANAC46          <-----------GT1    <---------ALFIN1 ----ANAC58   <---------GLK1(2)     <---------GLK1(2)        <---------MYB52(1)<------NtERF2 <-------   tcgccgcccagacgaagaatctgtaacctagattcccagcatctccacaacgattcaaaacccgttcgattaacccgggtcggagttcaacaccggattc  26358700                                                              --------->ETT(2)                                                       --------->ATHB12 -------->DOF2       <---------ARR14(2)       --------->GLK1(1) --ARR14(2)          --------->ARR14(2)       <---------GLK1(1)  --------->bZIP60(1) <---------YAB1 --TEIL --------->GLK1(1)                <---------At4g35610 <---------HSFB2a(2)   --------->YAB1   - ->ARR14(2)----------------->AGL1        --------->At4g35610 --------->HSFB2a(2)  <---------YAB1   <- -------MYB52(1) <---------LBD16         --------->LBD16 <---------GLK1(1)      --------->YAB1     <- --GLK1(2) <-----------------AGL1      <---------LBD16<---------YAB1         <---------ARR14(2)    <-   gttaagcgcgagttccaacttcggaaccctagaatgaaatttccgcagaattctgtatgatttctcgacatcactcgcgaattcatcatacttggagttt  26358800          <-----------RAV1(1)        <-------GAMYB                                                       --------->HSFC1(1)       <---------MYB46(3)                                                   --------->HSFB2a(2)       ------>ZmHOX2a(2)                               --------->LBD16  --------->ZAT18       --------->MYB52(2)                             <---------HSFB2a(2)   <---------HSFB2a(2)      <------ZmHOX2a(2)                               --------->ANAC46  --------->At4g35610  --------->SPL7                       --------->ARR14(2)           --------->HSFB2a(2)  <---------TOE1(2)                    <---------ARR14(2)     --------->ARR11(3)  <---------ANAC55(2) -------->TOE1(2)                 --------->ANAC58    --------->HSFB2a(2)   <---------HSFC1(1) --------ANAC58                   --------->ANAC58   <---------LBD16<---------HSFB2a(2)      <------- --------ANAC58      <---------HSFB2a(2)     <---------MYB52(1)<---------YAB1     ----------->GT1 --------ANAC46      --------->HSFB2a(2)    <-----------HVH21 <---------ARR11(3) <-------------------   ttcgtgcgatcgttgtggctcttctcgagacaaactaagccaatcccgttacttctccggaaattatcttcgagagctctagaaacgtgaaaacttcggt  26358900                                                                                          <---------CCA1(2)                                                                                          <---------At4g35610                                               <---------ANAC58                          ------->TEIL       ---------->DOF2          ----------->GT1<---------ANAC58                  <-----------ARR10 --DEAR3(1)                    <---------TOE2(3) <-------GAMYB                   --------->GLK1(2) ----TaNAC69(2)          <---------TOE2(3)     <---------ANAC46                 <---------GLK1(2)   gaatcaagtcaaagcgagacttaaattgagaataatgtaagaaaatttggcgtttgctaagaagaaactcgactatgggagagaatctatgcatctctct  26359000                                                                ------------>AtMYB77                                                               --------->ANAC46                                                             --------->MYB52(1)                                                           <---------MYB52(2)                                                       ------------>CBF                                                      ----------->RAV1(1)                                                    <------NtERF2                                                    ------>NtERF2                                                   --------->ANAC58                  <------------CBF           <---------ANAC58<---------DOF5.7(2)                  <--               <---------YAB1   <---------GLK1(2)  --------->ANAC58 <-------GAMYB           <--------            --------->ICU4  <---------At4g35610    --------->ANAC46----------->GT1    <---------TOE2(3) <---------DOF5.7(2)    <-----------HVH21    <---------ANAC58<-----------GT1------->GAMYB  --------->MYB52(1)   cgtaaacggtagcatttatgaattgttgtcatcggcttctcgcattttcttgtccgccacaattaacgacagttacaacgcagtcgtttagattaacgaa  26359100                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  <--                             <---------DAG2                               --------->ANAC58      -----                             <----------DOF2                        --------->LBD16    <---------HSFB2a(2)                     <---------AHL20(2)                  <---------TOE2(3)--------->ANAC58    <------                <---------ARR11(3)        --------->MYB52(2)        ------------>CBF   --------->HSFB2a(2) ------ATHB1   <---------At4g35610        <---------MYB46(3)       --------->ANAC46 --------->GLK1(2) -TOE2(3)    <-----------RAV1(2)        <---------MYB52(1)        <---------LBD16  <---------GLK1(2)   taattcggacctaggccagatgtttaatgggctttatcaagcgtttgtttgggcctgttaatgtaatttgcgcaataagcaaacaaattctggacaaata  26359200                                 ----------->GT1                              --------->ALFIN1 ------->TOE1(2)            <-----------RAV1(1)                                   ----------->HVH21 -------ANAC46            --------->YAB1                                  <---------ZAT2 ------>ANAC55(2)         <---------ICU4               --------->AHL20(2) --------->ZAT2 -------ANAC58           --------->ICU4    --------->YAB1            <---------HSFC1(1) -------ANAC55(2)      --------->YAB1     <---------------AtSPL8     --------->HSFC1(1) -------ANAC58      --------->TOE2(3)     --------------->AtSPL8     <---------HSFB2a(2)          <-- ---->MYB52(1)    <------ZmHOX2a(2)       --------------->AtSPL3     --------->HSFB2a(2)  --------->WRKY45 ---MYB52(2)   ------>ZmHOX2a(2) <---------PCF2    <---------YAB1 --------->ARR11(3)    <----------DOF2   acgtgagaagttagggatcgatccataataatgtggggtcattaatcgtacttactataaatttttaagttctcgaagcagggtttgacactttgactaa  26359300            <---------MYB52(1)          --------->HSFB2a(1)        ------>NtERF2                                       <-----------GT1      --------->ATERF1(1)                               --------->AHL20(2)      ----------->HVH21                                <---------YAB1      <------NtERF2                                  --------->YAB1     --------->ABI4(2)                              --------->ICU4     <---------ATERF1(1)                            <---------YAB1     ------>NtERF2                             --------->TGA2(1)         <----------ID1  <---------RAP2.3(1)                          <---------bZIP60(1)     <---------ICU4 <---------DEAR3(1)                            <---------TGA2(1) <----------DOF2 <---------RAP2.3(3)                   --------->TOE2(3)<---------AHL20(2)                    <------ --------DOF2                  <---------ZAT18 --------->bZIP60(1)  --------->YAB1         --------->YAB1   ctttcggcgcgaccgttcttcaaatttctatattgcccttacataaatgatgtcattataaattacactttcataactacaaaaactatacaacaataac  26359400                                                                                          --------->TOE1(3)                                                                                         --------->ZAT6                                               --------->ARR11(3)                 --------->ICU4                                              --------->YAB1                      --------->AHL20(2)                                    <---------ANAC55(2)                    ---------->DOF2--------->TOE2(3)        <---------YAB1  <---------YAB1 ------->TEIL  ---------->DOF2     <---------YAB1<-----------GT1 ---ARR11(3)         <---------YAB1 --------->ANAC55(2)          ------->TEIL   --------->TOE2(3)   ttagtacctcatgcttaaaccttgtgatttttgttaatatgtatccaaagataaccaaagaaacatgtatatatgatcaaagcattaattaaccctaaat  26359500  Previous    Next  AGI:  At5g65820.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G49730.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71515.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24801.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 26357102    to: 26359015    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g65830.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49750.1); similar to unknown [Populus trichocarpa] (GB:ABK94368.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 26359342    to: 26360547    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version