Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->At4g35610      --------->MYB46(3)                                                              <---------MYB52(1)    <-----------GT1     ---------->DOF2                                             --------->MYB59 -------->DOF2    <---------ZAT14                                                 <---------ATHB12 -->MYB83     <---------WRKY18(1)             ---------->DOF2                   --------->WOX13(1) -->MYB46(1) --------->WRKY38(1)      <---------ZAT2                      --------->ATHB12 ------>RAV1(1)   <---------At4g35610 --------->ZAT2                      <---------MYB46(3) -->MYB46(3) ----------->HVH21  <---------LBD16                          <---------YAB1<--------P  -- ->HVH21     --------->WRKY12  ------>ZmHOX2a(1)           <------ZmHOX2a(1)<---------WOX13(1)<------   acaaagtcacaacccttgactgctcagaaagtccttcggaagcagggagaaagatgggagaggagacagaagatggtgattgcaatcaggtagttttcat  26332700      ---------->DOF2   <----------DOF2<---------ANAC58                <----------DOF2                                   < <---------------AGL15          ----------->RAV1(1)              --------->ZAT14                   -- --------------->AGL15     <----------DOF2   <-----------GT1     --------->ETT(2)                ---- ----->TEIL       <---------ANAC58         --------->YAB1        <---------ETT(2)               <---- ---AtLEC2        <---------ANAC46  --------->At4g35610          <---------ZAT14    ----------->HVH21   gaactctttaaagaagaattgcctgcaaactttacaacagatgaataataccctttggctatttctgtagactgggataaacgcgtctgaaacagtgatt  26332800                                     <---------ANAC55(2)                                    <-------TEIL      --------->At4g35610       --------->DAG2                     <---------ALFIN1      <---------At4g35610       <---------------AtSPL8             ----------->RAV1(1)     ------->TEIL   --------->CCA1(2)--------->ANAC55(2)        ------->GAMYB ---------ICU4     <---------ARR11(3)--------->ANAC58           --------->ANAC46 ------->ICU4      --------->ARR11(3)--------->ANAC58          --------->MYB46(3)      <---------MYB52(2) ----->YAB1   ------->GAMYB------->TEIL                       -------->P <-----------RAV1(1) ---TEIL   ----------->RAV1(1)  <---------------AtSPL3     <---------MYB52(2)   ---------->DOF2   cataatgaagctgcaacagaagatatatgcacataaggtacgtctcagtcttcaccagataactaacccccacatatgttgtcaaagtcactaacaagag  26332900                                                      --------->HSFC1(1)                                                      --------->HSFB2a(2)             <-------GAMYB                            <---------HSFC1(1)             <---------At4g35610      <----------DOF2 <---------HSFB2a(2)            <---------MYB46(3)        ------>ZmHOX2a(1)                  <---------AHL20(2)            <-----------RAV1(1)   ------->TEIL  <------MYB46(1) --------->MYB52(1)    <---------WOX13(1)      <---------ANAC58 --------->ARR14(2)       <------MYB83----------->ARR10        <------------CBF      <---------ANAC46 <---------ARR14(2)    <---------ANAC58  --------->CCA1(2)    --------->ATHB12      <---------ANAC58 <---------GLK1(2)     <---------ANAC58 --------->ARR11(3)   <---------YAB1   tagttgtttcttgtctgttgatgcagaaactctatgaatccttttgggcttggtttctagagaagataagggtatgtaaatggatttgattgattttaaa  26333000                                                                            <---------TOE1(3)                                                                       --------->MYB52(2)                                                                       --------->MYB46(2)                                                                     <---------MYB52(1)                                                               <---------ZAT6                                                           <---------ZAT14*TSS         ----------->GT1                                                    <---------ANAC58 <--------P  <------MYB83                                                    <---------ANAC58<-------GAMYB<------MYB46(1)                    --------->YAB1               --------->GLK1(1) <---------MYB46(3) <------MYB83                    <---------ICU4              <---------ARR14(2) <------MYB46(1)    ----------->GT1                   <---------YAB1               <---------GLK1(2)  <------MYB83<--------P                 --------->YAB1                 --------->ARR14(2) --------->MYB55(2) <------MYB46(1)                --------->ICU4                --------->LBD16  <-----------RAV1(1)  --------->ALFIN1        <---------MYB46(3)                   --------->HSFB2a(2)  <---------AtMYB61 <--------P   <---    ------>ZmHOX2a(2)                        <---------HSFB2a(2) <--------P <---------TOE2(3)  ------   actcgatcggtcgatgtgataatcatagtcagttttttttttttcttccagatttcgagtgagtagtgttggttagttaaggtagggtagggaaaaatcg  26333100                                                                            <----------DOF2                                                                   --------->ICU4                                                                   <---------YAB1                                                                 --------->YAB1          --------->ALFIN1                                       <---------ICU4          <-----------RAV1(1)                                   <---------ATHB12 <---------ANAC58   <---------ANAC46                            --------->ICU4 <---------ANAC58 --------->ALFIN1     --------->ATHB12     <---------RAP2.6(3) ------MYB52(1)   <---------ANAC46    <---------YAB1       --------->RAP2.6(2)                      - --->ATHB12<-------GAMYB         --------->GLK1(2)    ---------->DOF2  <---------LBD16             --   ttggcttctagtgtgttgcagtgtgtgtatttgagaatatatgatttgtgagactaaaaagccgaaatcattatcggggtttattgtttcttctacttgt  26333200                                                              ----------->RAV1(2)                                                              --------->At4g35610           <---------WOX13(1)                               <---------RAP2.6(2)         --------->ATHB12        <---------MYB52(1)      <---------ZAT14        <---------YAB1           <--------P             <---------ZAT6    --------->ALFIN1        --------->ICU4         <---------MYB46(3)       --------->ALFIN1<---------ANAC58 -------->YAB1          <---------At4g35610     ------->GAMYB <---------At4g35610             <------ ------->ICU4      <----------DOF2            --------->At4g35610       <---------ANAC58  <---------GLK1(1)   aatgatgttgatgattgatgtcttttagctcatcggttagtaagtgtcaacagcaagagtgttcggctggactaccgtggcccattctgtagatttcttt  26333300                                                       ----------->HVH21                                                     <---------At4g35610                                                     --------->At4g35610                                                    --------->ARR11(3)                                                    <---------ARR11(3)                                                   <---------GLK1(1)                                                   --------->RVE1(1)                                                   <---------RVE1(1)                                                   --------->CCA1(1)                                          --------->ANAC55(2)        --------->ANAC58                  --------->ANAC55(1)        --------->ANAC58                  --------->ANAC58     <---------PCF5                       <---------ANAC55(2)     ------>NtERF2                        --------->ANAC46     --------->PCF2          --------->CCA1(2)     --------->GLK1(1)                               <-    <-----------TCP11(1)    <---------ARR11(3)    <---------ARR11(3)                            -----    <---------ATERF1(1)     --------->ARR14(2)    --------->ARR11(3)      <-----------GT1       <----  <---------LBD16  <---------MYB52(1)     --------->ANAC58    <---------ETT(2)                 ------ ----DOF2 <---------ALFIN1----------->ARR10   ---------->DOF2 --------->ETT(2)             <---------TOE2(3)   ctagcccggcccacaacttccattgggctagatatgtttttctcacgtaaaagatatctgactgtcgatattgaagtaacttcttaaaacatttagattt  26333400                                                                              <---------ARR14(2)                                                                             <---------RAP2.6(3)                                                ------>ZmHOX2a(1)           <---------------AGL15                                                <----------DOF2             --------------->AGL15        <---------AHL20(2)               --------->AHL20(2)                ----------------->AGL2        --------->AHL20(2)               <---------AHL20(2)                ----------------->AGL1 --------->YAB1                     <---------YAB1             --------->AHL20(1) --------WOX13(1)              --------->At4g35610             --------->AHL20(2)          --------->LBD16 ---->AHL20(2)    <----------DOF2----------->TGA1              <---------ARR11(3)     --------->GLK1(1) -----AHL20(2)    <---------DAG2 ----------->HVH21             <---------AHL20(1)     <---------GLK1(1) --->AHL20(2)<-----------HVH21 <---------At4g35610  --------->YAB1         ----------------->AG   aattgataatttaaatgtcacttttggttttttagatgacgattaaaatccttttcataacccaaaatattagttttgccgatattagaaatccgaagaa  26333500                           ----------->GT1                            <---------ALFIN1                          <---------TOE1(3)                       <---------ZAT14                          <---------TOE2(3)                       <---------ZAT18                  <---------ATHB12                                --------->ZAT14                --------->WOX13(1) --------->AHL20(2)        <---------ZAT14                   >>>>>>            <------ZmHOX2a(1)      --------->YAB1            --------->ZAT14          <---------TOE2(3)   aatgacagaaaataggattaatcaatttagggtttaataaaaaatagtgagtgagagagaggctacagtgctccacattgacatcaacaaggttgaagaa  26333600  Previous    Next  AGI:  At5g65770.1    Description:  LINC4 (LITTLE NUCLEI4). Identical to Putative nuclear matrix constituent protein 1-like protein [Arabidopsis Thaliana] (GB:Q9FLH0;GB:O49539); similar to LINC1 (LITTLE NUCLEI1) [Arabidopsis thaliana] (TAIR:AT1G67230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17747.1); contains InterPro domain Prefoldin (InterPro:IPR009053) Range:  from: 26328813    to: 26333223    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g65780.1    Description:  ATBCAT-5; branched-chain-amino-acid transaminase/ catalytic. Identical to Branched-chain-amino-acid aminotransferase 5, chloroplast precursor (BCAT5) [Arabidopsis Thaliana] (GB:Q9FYA6;GB:O49539;GB:Q9FLG9); similar to ATBCAT-3/BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) [Arabidopsis thaliana] (TAIR:AT3G49680.2); similar to ATBCAT-3/BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3), branched-chain-amino-acid transaminase/ catalytic [Arabidopsis thaliana] (TAIR:AT3G49680.1); similar to branched-chain amino acid aminotransferase [Solanum tuberosum] (GB:AAF07192.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544); contains InterPr Range:  from: 26333074    to: 26336038    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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