Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <---------ALFIN1                           --------->PCF2                         ------->MYC2                         ------->PIF5                         <-------MYC3                         ------->MYC3                         <-------PIF5                         ------->MYC4                         <-------MYC2                         ------->PIF4                         <-------PIF4                         <-------MYC4                        <---------ANAC58                        <---------ANAC58                        --------->O2                        <---------ANAC55(2)                        <---------bZIP60(2)                        <---------O2                        --------->ANAC55(2)                        <---------TGA1a                        <---------ANAC46                        --------->TGA1a                       ------------>OsbHLH66                    <-----------HVH21                    <-----------TGA1                   <---------ANAC55(2)                   --------->ANAC58                       --------->GLK1(2)                   --------->ANAC55(2)          --------->ANAC46                   --------->bZIP60(1)          --------->ANAC58          --------->ARR14(2)                   --------->TGA1a              --------->ANAC58          --------->GLK1(2)                   <---------bZIP60(1)    <---------MYB59 <---------ARR14(2)      <---------YAB1 <---                   --------->ANAC58    <---------WRKY18(1)--------->ARR14(2)      <---------TOE2(3) ---------MYB52(1) --------->bZIP60(2) <-----------GT1--------->YAB1      <---------ARR14(2)     ---- -----At5g28300    <---------O2  <-------MYC3 <---------ALFIN1          --------->HSFB2a(1)  -------- >At4g35610        --------->O2  ------->MYC3 --------->ZAT6            --------->HSFC1(2)  ---------   ccgtttattgctcagactgtaacgtcacgtgcccacatgtttgaccttacactccatcacaatctgcatttcgaagaatccgataagattggaaatgatt  26278100                                  <---------ARR14(2)                              <---------ARR11(3)                                  --------->ARR14(2)               <---------AHL20(2)     --------->ANAC58 <---------AHL20(2)   --------->KAN4(1)                            --------->ARR11(3)     --------->ANAC58 ------AHL20(2)       <---------HSFB2a(1)                          --------->AHL20(1)     --------->AtLEC2 ----->AHL20(2)      <---------KAN4(2)          --------->GLK1(2)  <---------AHL20(1) <-----------GT1 ->ATHB12 <---------ALFIN1       --------->GLK1(1)         ----------->GT1        --------->ARR11(3) >ICU4   --------->MYB46(3)     <------ZmHOX2a(1)       <-----------GT1   ---------->DOF2 --------->ANAC46   tatataatcgaaccacattgtggaacattcaagaggaatccacattagacaatctaataaactgtttaatattttgaaaagaaagattttacatgcaaat  26278200                                                                 --------->WRKY38(1)               --------->ANAC46                                  --------->WRKY12              --------->LBD16                                   <---------MYB52(1)              ------>NtERF2                                     --------->DOF5.7(2)            <---------LBD16                                    <-------GAMYB          ------>ZmHOX2a(2)                                  <---------TOE2(3)         <------ZmHOX2a(2)                             <---------MYB52(1)         <---------GLK1(1)                            <-------GAMYB         --------->GLK1(1)                           <------MYB83--------->WRKY45        <---------ARR14(3)                           <---------DEAR3(2)        <-----------ARR10                            <------MYB46(1)        --------->ARR14(2)                           ----------->GT1        --------->ARR11(3)                           <---------MYB46(3)     <----------DOF2        --------->ARR14(3)                          <---------DEAR3(1)   <-----------GT1        <---------ARR14(2)                     ------->MYC3 <---------At5g28300        <---------ARR11(3)      <---------GLK1(1)  <---------ORA47(1)<----------DOF2    ---------->DOF2     <---------ARR11(3)     <-------MYC3<-----------GT1  <---------DAG2   <-------   ggaaaacaaagatctccgcgtctcaagttatttgaaatctcattttgcatatggtcggttattaccgttgacttttaactttatcgtccatcccaatgaa  26278300                                                                    <---------YAB1                                                             <------ZmHOX2a(2)                                                            <---------ARR14(2)                  -----                        ----------->GT1                --------->MYB52(1)                       -----            <---------ANAC55(2)                   ==================HOX2a_HOX2a                 ----- <---------ALFIN1  --------->AHL20(2)             <------ZmHOX2a(1) --------->ICU4              ----- --ATHB12   ----------->GT1                ---------->DOF2  --------->ARR14(2)              ---------   acaacacttgaaatatgtaaaaaaaatagcaaaattgacccaaaaaaaagaaggacttaacggatcagtgattattttcttcgaggcaaaacaattacat  26278400                                                     <---------AHL20(2)                                                    --------->YAB1                                               --------->TOE1(3)   ----------->GT1      --------->ANAC46       <---------DAG2 ---->ANAC58            --------->ANAC58    <-----------GT1   --------->REM1(1)            <--------- ---->ANAC58            --------->ANAC58 <---------ICU4     ------>ZmHOX2a(1)      --------->AHL20(2) ---->ANAC46--------->ANAC58       <-----------GT1 <---------YAB1           --------->TOE2(3) ---->AtLEC2--------->ANAC58    --------->ANAC46  --------->AHL20(2)  --------->YAB1    <---------ARR11(3) >AHL20(2)---------->DOF2     ---------->DOF2  --------->TOE2(3)    --------->AHL20(2)  --------->ARR11(3)   gcaaatggaaacaaaagccaattcacacgcataaaagtcacaatttttaccttataatattcctacaacttaaaataacataaaaaaaaatgtctttatc  26278500                                                                            <---------ICU4                                                                           <---------MYB52(1)                                                --------->AHL20(2)      =========================HOX2a_HOX2a                   <---------GLK1(1)            <---------AHL20(2)  <---------YAB1               <<<<                   --------->GLK1(1)   --------->TOE2(3)         ------>ZmHOX2a(1) ---------->DOF2              ---------->DOF2     <----------DOF2                ==============HOX2a_HOX2a    <<<<<<< -DOF2  ---------->DOF2     --------->ZAT14   *TSS    <-----------GT1   ------>ZmHOX2a(2) ------>ZmHOX2a(1)   gaaacatcactaaagaaaaagaaatctctctatagtctttatcttagtatttaatttctccatcttccttatgatccattatgcccaaagtccttcttct  26278600                 --------->LBD16                --------------->AGL15                <---------HSFB2a(2)                --------->HSFB2a(2)                <---------------AGL15               ----------------->AGL2               ----------------->AGL3          <---------AHL20(2)                  --------->AHL20(2)       <--------HAHB4                   ------------------------>ANAC81       --------->YAB1                   >>>>>>>>>TBF1           <---------At4g35610        <------ZmHOX2a(1)      <---------YAB1                 >>>>>>>>>TBF1             <---------ARR11(3)         --------->ANAC58      <---------AHL20(2)          >>>>>>>>>TBF1    ----------->GT1                        --------->ANAC58 <<<<<TBF1<-----------GT1      >>>>>>>>>TBF1  --------->YAB1   --------->ARR11(3)<----------DOF2 <<TBF1<---------ICU4       >>>>>>>>>TBF1  --------->YAB1---------->DOF2      <-----------GT1      <-   tcttctctataattacttccacaaatagaagaagaagaagaagaagaataatatagaaaaaaagagagcttctcttcttatttctttctcacaggaaatg  26278700             --------->DAG2            ---------->DOF2       ----------->GT1                      <---------YAB1         --------->YAB1       <------MYB46(1)                    --------->YAB1           --------->ATHB12              ----       <------MYB83                 --------->ANAC46               <--------HAHB4                ----     <--------P                     --------->ANAC58               <---------ICU4                ----    <-------GAMYB                   --------->ANAC55(2)           --------->ICU4                 <---   <------MYB83                     --------->ANAC58              <---------YAB1      ===============   <------MYB46(1)           --------------->AGL15             <-------TEIL           ------>ZmHOX2a(1)   <---------MYB46(3)        <---------------AGL15  --------->TOE2(3)               ------>ZmHOX2a(2)  --------->MYB59            <---------ANAC58       --------->TOE1(3)     --------->ANAC46     <-----  <---------AtMYB61          <---------ANAC58 <---------ARR11(3)--------->YAB1    <---------ARR14(2) --------MYB46(3)     <---------ZAT18    <---------ATHB12 ----------->RAV1(1)     --------->ARR14(2)   gtgtttggttggagaaaagcgttttgcacttccgtttcaagtaatcaagataaacctcaacaacattcatcattacacactactgatcctccaattccca  26278800                                                                     <---------At4g35610                                                                     --------->At4g35610                                                                  <------NtERF2                                                                  --------->ATERF1(1)                                                                <---------ANAC46                                                               ------>NtERF2                                                               --------->At4g35610                                                               <---------LBD16                                                              <---------ATERF1(1)                                                             <---------DEAR3(1)     --------->GLK1(2)                                      <---------LBD16                        --    <---------ARR14(2)                                     <---------bZIP60(2)                     --    <---------GLK1(2)                                      --------->ANAC46                 ---------    --------->ARR14(2)                                     <---------O2                     <-------- ----->ANAC58                    ------>MYB46(1)           --------->O2--------->RAP2.6(2)  --------- ----->ANAC46       <------MYB83 ------>MYB83           <------ZmHOX2a(2)                   <-------- ----->ANAC58       <------MYB46(1)                     ----------->HVH21<---------ALFIN1------>ZmHOX2a(1) ------ALFIN1      --------->MYB59                     <-----------HVH21<------NtERF2<---------ALFIN1 =================HOX2a_HOX2a    -------->P   =================HOX2a_HOX2a          ------>NtERF2<--- ----ALFIN1<------ZmHOX2a(2)<-----------GT1   ------>ZmHOX2a(1)<------NtERF2        <---------At4g35610   caccaagattccgatcaaagtttggttttttatccaacccttcaactcctcgtctccgatcacgcggcggaagcggcactggatgccgctcctcagcttc  26278900   --------->WOX13(1) ------->bZIP60(2) ------->ANAC46 >ZAT2 -At4g35610                                            --------->ANAC46            <---------At4g35610 >At4g35610                                            --------->ANAC58            --------->At4g35610 -ZAT2                                          <------ZmHOX2a(1)              <-----------GT1 ------ALFIN1   <---------CCA1(2)  <---------ALFIN1    --------->ANAC58 <------ZmHOX2a(1)     <------   cacatcagtcactatcccatctcttccaactagtcccaaactccattgcaggactacgagcaatgctactccaaggactagtaacagctcaagtcccaag  26279000  Previous    Next  AGI:  At5g65683.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to EDA40 (embryo sac development arrest 40), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37890.2); similar to zinc finger protein [Medicago truncatula] (GB:ABY48131.1); contains InterPro domain von Willebrand factor, type A (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 26278546    to: 26281009    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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