Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              ----------->HVH21                                                                           --------->LBD16                                                                           <-----------HVH21                                                                          --------->ANAC46                        <---------bZIP60(2)                               --------->ANAC55(2)                        <---------ANAC58                                  <---------ANAC58                        <---------ANAC58                                  <---------ANAC58                        <---------ANAC46                               ------->TEIL                    <-------MYC2                                       <---------ARR14(2)                    ------->MYC3                                    <---------ANAC55(2)          <---------CCA1(2)                                         --------->ANAC55(2)     --------->ZAT6 <-------MYC3                               <---------AHL20(2)   --------->YAB1   ------->MYC2                              --------->AHL20(2) ---->ZAT14       ------->TEIL                                <---------AHL20(2)    <---------ZAT18 -----ZAT14<---------ARR11(3)                             <---------ARR11(3)<---------MYB52(1) ------ -->REM1(1)--------->ARR11(3) <---------MYB46(3)        ----------->GT1--------->ARR14(2) <----------   cactatcacactatatcttgaacgtgtcgtgtttgttcttgggatgctctcttcgaacaagttatttattatgtatccgtgactcgtgaacttgtgaggc  26238800                                                                                 ------>NtERF2                                                                                ----------->HVH21                                                                                --------->DEAR3(1)                                                                               <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             --------->TOE1(2)                                                                             --------->TOE2(2)                                                                            <---------HSFC1(2)                                                                            --------->HSFB2a(1)                                                                            --------->HSFC1(2)                                   --------->ANAC58                         <---------HSFB2a(1)                                   --------->ANAC58                <xxxxxxxxxxxxxxxxsmallRNA(s)    <-                                 <------ZmHOX2a(1)                <xxxxxxxxxxxxxxxxsmallRNA(s)  -----                                <----------ID1           <xxxxxxxxxxxxxxxxsmallRNA(fl3)         -----                              --------->DAG2   ----------->GT1    --------->ALFIN1           <xxxxxxx                              <---------------AtSPL8    --------->ANAC58    --------->MYB46(3) ------                       ---------->DOF2        ----------->GT1    <------ZmHOX2a(1)        <-------GAMYB >NtERF2            --------->At5g28300---------->DOF2  --------->ANAC58   ------->TEIL  <xxxxxxxxxxx -HVH21  --------->MYB52(1)  ---------->DOF2  <---------ZAT6<xxxxxxxxxxxxxxxsmallRNA(le3)<---------MYB46(3)   ccattacttcataacagttttcggtaaaagaaaaaggacgaaaaagaagagttaaaaaacgctagaaggaggggtcgaacctccgaccttgtggttaaca  26238900                  <xxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxsmallRNA(si3)              ----------->RAV1(2)              ------>MYB46(1)              <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)              ------>MYB83   --------->ANAC58                                        --------->ARR11(3)   --------->ANAC46                                        <---------ARR11(3)   --------->ANAC58                                        --------->AHL20(1) <---------ALFIN1<xxxxxxxxxxxxxxxxsmallRNA(s)              --------->AHL20(2) --------ALFIN1<xxxxxxxxxxxxxxxxxxsmallRNA(se3)            <---------AHL20(2)                  ------ ---->ANAC46------->GAMYB                                  <---------AHL20(1)                <------- -->GAMYB  --------->MYB46(3)                             --------->AHL20(2)                 <------- xxxxxxxxxxsmallRNA(si3)                               --------->YAB1                        >>>>>>>> --->MYB46(3)--------->MYB52(1)  *TSS<-----------GT1  --------->AHL20(2)            ------------>CBF xxxxxxsmallRNA(se3)          <----------DOF2     ------------>CBF             <---------AHL20(2)   -   gccacacgctctaaccaactgagctattccagcttttgttaactatttcaaaaacaataaatatattcgtaaacagatgttttaatttcaatttgacttg  26239000    <-----------GT1 ----->HVH21                                                                                       -- --ANAC58                                                                                        ---- --ANAC58                             <----------DOF2   <---------ICU4                           <--- >>WRKY18<----------DOF2 <---------TOE2(3)         ----------->RAV1(1)                          ----- -------->ICU4          <-----------GT1    --------->ARR14(2) <---------TOE1(2)                 -----   acaagattaccctttggcacatcgattaacatatcatcgactttggaacctcacaacataatcgcatgtagtcacacttagtcaaatccaaacccaaaaa  26239100            ----------->GT1 <---------AHL20(2)      --------->AHL20(2)   --------->YAB1  ---------->DOF2         --------->AHL20(2)                                                    ----- ------->TOE2(3)        --------->YAB1          --------->YAB1                              --------- ----->ARR11(3)       --------->AHL20(2)        <---------ICU4                              --------- ------ARR11(3)      --------->YAB1            --------->ICU4                        --------->ATERF1(1) ---->RVE1(1)       --------->AHL20(2)       --------->YAB1                         <---------ATERF1(1) ---->CCA1(1)   --------->AHL20(2)        --------->YAB1  *TSS<---------YAB1        ------>NtERF2   atctcaaagaaaataagaaaaaataaaaataaaaatgaagagaataagaataatggcaacgcttgtaatagcaaacatgttaatggcgactccaacgtct  26239200                                                                                                  <--                                                                                                  <--                                                                                 <---------ANAC46 ---                                                                    ---------->ID1            <------                                                                  <---------ANAC58         --------->ARR14(2)                                                                  <---------ANAC58        <---------CCA1(2) ---->HSFB2a(2)                                                  --------------->AtSPL8 --------->YAB1 >TGA1a                  ------>ZmHOX2a(2)                 ---------->ID1    <----------DOF2  <------ >O2                 --------->ETT(2)         <------------------------ANAC81<---------DAG2<---------ARR14(2)   cgagcctctctcaatcttcttcgtcgatcgccaaaacccaaatatttctcatcttcttcttgtcattttcgtccctcaacttttcgtaaatcatatcctt  26239300                                                 --------->AtMYB61                                             --------->MYB46(3)                                            =====================================HOX2a_HOX2a                                            <------ZmHOX2a(2)                                            ==================================HOX2a_HOX2a                                            ===============================HOX2a_HOX2a                                           <---------ARR11(3)                                           <---------ARR14(2)                                           --------->ARR14(2)   ----------->RAV1(2)                  --------->HSFB2a(2)                      ------>NtERF2 <---------ALFIN1                       ------>ZmHOX2a(1)                       --------->ANAC46 ---------------AGL1                    <---------HSFB2a(2)                 <----------DOF2 ---------------AGL2        ---------->ID1 --------->AGP1                 ------>ZmHOX2a(1) -------------->AGL1  <---------DAG2 ==============HOX2a_HOX2a        <---------ALFIN1 ---ANAC58            <----------DOF2------>ZmHOX2a(1) <---------ALFIN1------>ZmHOX2a(1)         ---- ---ANAC58      <----------DOF2  <---------ALFIN1<---------ALFIN1   ------>ZmHOX2a(1)       ------>ZmHOX2a(1)   gccccatctggtcttcttctttctctttttgtctccctcctcctagatccaccacttccacctctctctcctcctcctctttccgccccttctcctctcc  26239400                           <---------ANAC46                           --------->DEAR3(1)                          --------->ATERF1(1)                         <---------RAP2.6(3)                         ------>NtERF2                        <---------ATERF1(2)                        --------->RAP2.6(2)                        --------->RAP2.3(2)                        --------->DEAR3(1)                        --------->ATERF1(2)                       --------->ERF1                       --------->ATERF1(1)                       --------->RAP2.3(1)                      --------->At4g35610                      <---------ATERF1(1)                      <---------At4g35610                      ------>NtERF2                     --------->DEAR3(1)                    --------->ATERF1(1)                   <---------At4g35610                   --------->At4g35610                   --------->ZAT2                   ------>NtERF2                   <---------ATERF1(1)                   ----------->RAV1(2)                  --------->RAP2.3(2)                  <---------DEAR3(1)                  --------->DEAR3(1)                 --------->RAP2.3(1)                 --------->ATERF1(1)                 --------->DEAR4(2)                 <------NtERF2                <---------ATERF1(1)                --------->ABI4(1)                ------>NtERF2                <---------RAP2.3(1)               --------->RAP2.3(3)               --------->DEAR3(1)               <---------ALFIN1               <---------DEAR3(1)               --------->RRTF1(2)               <---------ATERF1(2)               --------->RAP2.3(2)               --------->ANAC46               --------->ATERF1(2)               --------->RRTF1(3)               --------->RAP2.6(2)              --------->ERF1                    <---------TGA1a              --------->DEAR4(2)                <---------O2              --------->RRTF1(1)                ===================bZIP_DOF              --------->RAP2.3(1)               --------->TGA1a              --------->RAP2.6(1)               --------->O2              --------->ORA47(2)              ------>NtERF2          ------>ZmHOX2a(1)             ------>NtERF2<------NtERF2      --------->DEAR3(1)  <---------ARR14(2)             --------->LBD16             --------->ATERF1(1) ------>ZmHOX2a(1)             <---------At4g35610        <---------ATERF1(1)  --------->LBD16             <---------RAP2.3(1)      <---------MYB52(1)     --------->HSFB2a(2)             --------->At4g35610     <-----------HVH21       <---------HSFB2a(2)             <---------ATERF1(1) --------->ARR14(2)     <----------DOF2        <------ZmHOX2a(1)            --------->ANAC46--------->LBD16  ----------->HVH21   --------->ARR14(2)    <---------GLK1(1) -->ZmHOX2a(1)--------->ATERF1(1)<---------ARR14(2)  --------->GLK1(2)      <---------AtLEC2     <---   tccgtccatgtcttccgccgccgctgccgccgtggaatccgtcgtctccgacgagactctttcctcgaatcctctcttgcaggacttcgatttccctccg  26239500                                         <----------DOF2                                       --------->ZAT18                                       <---------ZAT18                                    <---------ANAC58                                    <---------ANAC58                              <---------TOE1(2)                  --------->YAB1 <---------ARR14(2)               <---------ALFIN1       <---------MYB52(1)    ------>ZmHOX2a(1)             <---------TOE2(2)                   <-----      <-------GAMYB          --------->LBD16               <---------TOE1(2)       <-----------GT1     <---------ANAC46  <-------TEIL<-------TEIL   <---------At4g35610        ---------->ID1  <------- ------MYB52(1)  <---------ATHB12--------->ARR14(2)<---------GLK1(2)      <<<<<<<<<TBF1<---------REM1(2)   tttgattccgttgatgccagtcatgttcgtcctgggattcgtgctctattgcagcatctcgtatgttcacaccttcttcttcgtttttcttcacagattc  26239600                                              --------->At4g35610                                              <---------At4g35610                              --------->ATHB12<---------ZAT2              --------->ALFIN1      <---------YAB1         <---------YAB1   --------->ZAT2         --------->GLK1(2) ------->TEIL              <----------DOF2 <------ZmHOX2a(1)        --------->GLK1(1) --TEIL          <---------YAB1 <---------WOX13(1)                  <---------GLK1(1) --GLK1(2)     <---------MYB46(3)       <---------LBD16   <------ZmHOX2a(1)             -------------   atgtatttttgattcgattgttatagcctctttgattgattttcaggaagctgaattggaggagctagagaaatctgtggagccaacatggccaaaactg  26239700  Previous    Next  AGI:  At5g65615.1    Description:  pre-tRNA. tRNA-Asn (anticodon: GTT) Range:  from: 26238860    to: 26238933    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g65620.1    Description:  peptidase M3 family protein / thimet oligopeptidase family protein. similar to peptidase M3 family protein / thimet oligopeptidase family protein [Arabidopsis thaliana] (TAIR:AT5G10540.1); similar to hypothetical protein OsJ_008669 [Oryza sativa (japonica cultivar-group)] (GB:EAZ25186.1); similar to oligopeptidase A [Medicago truncatula] (GB:ABY48141.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62794.1); contains InterPro domain Peptidase M3A and M3B, thimet/oligopeptidase F; (InterPro:IPR001567) Range:  from: 26239158    to: 26243129    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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