Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------ANAC46     <---------ANAC58     --------->TGA1a     <---------O2     <---------TGA1a     <---------ANAC55(2)                                                                          ---     <---------ANAC58                                                                        --------     --------->O2                                               <------MYB83               --------->ALFIN1     --------->ANAC55(2)                                        <------MYB46(1)            <---------ANAC46    <-----------------------TaNAC69(2)                         --------->MYB59          <---------DEAR3(1) ------>ZAT14                 --------->TOE2(3)            --------->WOX13(1)         --------->MYB52(1) -------ZAT14   <---------ANAC58                         ----------------->AGL1    --------->At4g35610 --ZAT14        <---------ANAC58           <------ZmHOX2a(1)   <---------TOE2(3)   <---------At4g35610   tgaagagacgtgagaagggcttatcgcagaaaccatagatttcaaggacggagatttatgccaattaggtttagaaagaattgatagcagacggtgtgga  26220800                                                                         <---------LBD16                                                                         <-----------------AGL1                                                                         ----------------->AGL1                                                                      ----------->HVH21                                                                --------->LBD16                            <---------HSFB2a(1)                 ------>NtERF2                            --------->HSFB2a(1)                --------->DEAR3(1)                       --------->ANAC46          --------->ANAC58 <---------ANAC46                       <---------HSFB2a(2)       --------->ANAC46--------->ATERF1(1)               --                       --------->HSFB2a(2)       --------->ANAC58<------NtERF2                     <-                      <---------LBD16           <---------LBD16<---------ATERF1(2)     --------->At5g28300              --------->GLK1(2)             ----------->HVH21  <---------DEAR3(1)     ----------->GT1             --------->ARR14(2)             ----------->ARR10  --------->ATERF1(2)    --------->TOE2(3)             <---------GLK1(2)           <---------ANAC46     <---------LBD16         --------->TOE1(3)  --------->ATHB12   ------>ZmHOX2a(1)  <---------LBD16  <---------ARR14(2)        --------->ARR14(2) ------>ZAT6 <---------ARR14(2)         --------->At4g35610  --------->MYB52(1)    <---------ARR14(2) ->ALFIN1 --------->YAB1--------->LBD16--------->MYB52(1)--------->ARR14(2)--------->LBD16        <--   acactcattgaatcagattcttcctccggaagattgcgaagtagcggagacacggagcaaaactgccggcgagtgaccggagaaggaaccgtaacatccg  26220900                                                                                                <----                                                                                              <------NtERF2                                                                                           --------->LBD16                                                                                          <---------ANAC58                                                                                          <---------ANAC46                                                                         <---------LBD16  <---------ANAC58                                                               <-------GAMYB           <---------ARR14(2)         <<<<<<<<<TBF1        --------->ARR14(2)              <---------MYB46(3)       --------->ARR14(2)  <---------GLK1(2)           <---------ARR14(2)           <---------ANAC46   <------ZmHOX2a(2)<----- ------->HSFB2a(2)           <------NtERF2--------->WRKY18(1)--------->ALFIN1--------->ARR14(2)<----- --------HSFB2a(2)         <---------ANAC46            --------->ZAT18 ----------->HVH21 ------>ZmHOX2a(2) -------ETT(2)  <------ZmHOX2a(1)        <-----------HVH21 --------->DEAR3(1)<---------ARR14(2)<-----   tcgagaatttcttcttcaggacttcgaaggcggatactgaaccagtcaaacccgaattgcaccgtggttgtattcgacggatcatcgatgatccgtggcg  26221000                                                                     --------->LBD16     ------>ZmHOX2a(2)                                           --------->ARR14(2)    <---------GLK1(1)                                            <---------ARR14(2)    *TSS                                                         --------->GLK1(2)                ---    --------->GLK1(1)                                   <---------ARR14(2)                       ----   --------->ARR11(3)                                   ------->TEIL<---------LBD16              ----   <---------ARR11(3)                                   <-----------ARR10                       =====   <---------AGP1                                       --------->GLK1(2)                       -----  <---------CCA1(2)                         <----------DOF2     <---------GLK1(2)               ----- ------DOF2   --------->YAB1           <------ZmHOX2a(1)--------->ARR14(2)                     <----- ----ANAC58  --------->ICU4           ----------->GT1   <---------ARR11(1)                    ------- ----ANAC46  <---------ATHB12    --------->DAG2        <---------ARR14(1)                     <------ ----ANAC58<---------At4g35610  ---------->DOF2 --------->HSFB2a(2)<---------LBD16     <---------MYB59   ttttggatctctccgatgatgaacacagaagagaaaaaggaggaaactttgcagaacgaatcttcagaatcgggggtttatctaatgggcctaaatgatc  26221100          <--------HAHB4          --------->YAB1         <---------YAB1 --->ZmHOX2a(1) ----->TOE1(3)                             ----------->GT1 ----->TOE2(3)                   --------->TOE1(3) ================================================MADS_MADS          <---------AHL20(2) ------------>AG--------------->AtSPL8   <---------At4g35610       <---------AHL20(2)              -- ->ZmHOX2a(2) <---------AHL20(2) --------------->AGL15             --------->AHL20(2)             --- ----YAB1--------->ICU4     <-----------HVH21                      <---------AHL20(1)             <-- -->ARR11(3) --------->AHL20(2)  --------->TOE2(3)                 --------->AHL20(1)            <--- ---ARR11(3)<---------YAB1<-------TEIL   --------->At4g35610  ------------>CBF        <----------DOF2   cttaatgggctattattatatgtacaagttcgtcaccttaataagctgttatatgttcaagttcaacaatttaatgggccttgatgagctttaatgggcc  26221200                                        --------->ANAC58                                        --------->LBD16                                       --------->RAP2.3(3)                                       --------->RRTF1(2)                                       --------->DEAR3(1)                                       --------->RAP2.3(2)                                       --------->DREB2C(2)                                       <---------DEAR3(1)                                       --------->RRTF1(3)                                       <---------ATERF1(2)                                       --------->ATERF1(2)                                      --------->RAP2.3(1)                                      --------->ORA47(2)                                      <------NtERF2                                      --------->ERF1                                      --------->ATERF1(1)                                      <---------LBD16                                 <---------RVE1(1)                               --------->ICU4                               <----------DOF2       <--                            <------NtERF2                                ------>ZmHOX2a(2)    <------                           --------->LBD16                          <---------WOX13(1)<---------CCA1(1)        --------->REM1(1)--------->At4g35610  --------->YAB1       <---------ARR14(2)--------->ARR11(3)    --------->At4g35610  <---------LBD16--------->ANAC58          <------NtERF2      <---------ARR11(3) ------->CCA1(2)       <---------DEAR3(1)<------NtERF2          <---------ANAC46  <---------HSFB2a(2) ------>ARR14(2)       ------>ZmHOX2a(2)------>NtERF2          <---------LBD16    --------->HSFB2a(2) -------ARR14(2)   ----------->HVH21 <---------RAP2.3(1)      ------->GAMYB <---------DAG2   -------- ------RAP2.6(3) <---------At4g35610 <---------ATERF1(1)   --------->MYB52(1)<----------DOF2 <-------   gatatgagctacactatggaggtgatcggcggaataatgcgccggcaatgagaagagattataacggcggattgatcgccttttcgagatatttcagctt  26221300   --------->HSFB2a(2)   <---------HSFB2a(2)                                                             --------->ANAC58 --------DOF2                                                                      --------->ANAC58 < ---GLK1(2)                   --------->WOX13(1)                            <<<<<<<GRF7            -- ->At4g35610         --------->LBD16                                      ----------->HVH21        <- --At4g35610       <---------LBD16                                <---------YAB1 ------->GAMYB     <-   cttttctagcagaacatgttcaccggaatcatctatcaataaccagtttaggcttctctgcatcacttgtgataccctgacaacgacgcacaatttctct  26221400                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                           <---------LBD16                                                                                       --------->HSFC1(2)                                                                                       --------->HSFB2a(1)                                                                                       <---------HSFC1(2)                                  <---------LBD16                                      <---------HSFB2a(1)                               <---------GLK1(1)                                   --------->RAP2.6(2)                           <------ZmHOX2a(2)                       <---------GLK1(1)<------NtERF2<---                          --------->ARR11(3)                       --------->GLK1(1)<---------RAP2.6(3)                          <---------ARR11(3)         --------->ANAC58           --------->LBD16  ---- ---------GLK1(2)--------->DEAR3(1)                  --------->ANAC58           ------>NtERF2-------- ------->At4g35610    ---------->DOF2    --------->YAB1       --------->At4g35610------>NtERF2   <--- --------At4g35610  --------->ANAC46 <------ZmHOX2a(1)      ------->MYC3       <---------RAP2.6(2) --------ZAT2  ------->TEIL=================HOX2a_HOX2a     <-------MYC3      <---------LBD16------>NtERF2   cagcttctcagacaatgcatcgacgaaagatcgatatcaggaatcaagactatccaagcccatatgctgaaatctggttttccggccgaaatttccggca  26221500       <---------DEAR3(1)     <-----------HVH21                             --------->ALFIN1 -ATERF1(2)                                    <-----------RAV1(2) >HSFB2a(2)                                 --------->TGA1a -HSFB2a(2)                                 ----------->HVH21 >ATERF1(2)                                 --------->ANAC58 -LBD16--------->DEAR3(1)                   --------->ANAC46 -RAP2.6(2)            --------->ALFIN1 --------->ANAC58 >ANAC46   ------>NtERF2 --------->ALFIN1 --------->ANAC46                                         <- ---NtERF2--------->ANAC46              <---------ANAC55(2)                                     <---- ----->At4g35610   ---------->DOF2      --------->ANAC58                                        ----- ->LBD16  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ANAC58                              <---------GLK1(1) ------At4g35610   ===================================bZIP_DOF                 ----------->GT1<------   gcaaactcgtcgacgcgagtttaaagtgtggcgatatcgattacgcacgacaggtgttcgatggaatgtctgagagacatattgtaacatggaactcttt  26221600        --------->AHL20(2)                                                                ------->MYC3        <---------AHL20(2)                                         --------->YAB1         <-------MYC3       --------->AHL20(2)                                     <---------YAB1             --------->ANAC46  <---------ANAC46                --------->At4g35610    --------->ATHB12             <---------ZAT14  <---------ANAC58                <---------At4g35610    <---------ICU4               --------->ZAT18  <---------ANAC58                <---------ZAT2        --------->ICU4         --------->At4g35610 --------WOX13(1)            --------->ANAC58           <---------YAB1         <---------At4g35610 -----AHL20(2)               --------->ANAC58          <---------TOE2(3)     <-----------RAV1(2) ---->AHL20(2)           --------->ANAC58             --------->YAB1<---------TOE2(3) <---------ZAT18 ----DOF2                --------->ANAC58           <---------WOX13(1)      ----------------->AGL1 <-   aattgcttatttaattaagcacagaagaagcaaggaagctgttgagatgtatagattgatgattacgaataatgttttgccagatgagtacacgttgtct  26221700  Previous    Next  AGI:  At5g65560.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G07290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46395.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80799.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 26218238    to: 26221004    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g65570.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23055.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 26221194    to: 26223410    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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