Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               --------->AtMYB61                            --------->MYB46(3)                           --------->SPL7                          ------>MYB83                          ------>MYB46(1)                        <---------MYB59                        ------->GAMYB                                                      <---------ICU4                     --------->MYB52(1)                                                   --------->ICU4                 --------->GLK1(2)                                      ----------->GT1   <---------YAB1                 --------->ARR11(3)                                  <---------AtLEC2 <-----------TGA1                 <---------ARR11(3)           ----------->HVH21<---------ANAC46  <---------YAB1------ >GT1            <-----------ARR10 --------->YAB1    ---------->DOF2<---------REM1(2)--------->YAB1   tacagacatgtctatagaaaatctaaccgaaccacaacgatagtggatgtgacatgaaagtgtttacgtctacatggaaaattgttatcgtcatcattca  26212500                                                                                        --------->ANAC55(2)                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)                                                                          <---------AHL20(1)                                   --------->GLK1(1)                      --------->AHL20(1)                                   <---------GLK1(1)          <---------ARR11(3)        <---------ANAC55(2)                                  --------->ARR11(3)          --------->ARR11(3)      <---------AHL20(2)                       <---------AHL20(2)                    --------->YAB1    <-----------GT1------>ZmHOX2a(2)       <----------ID1  --------->AHL20(2)                 --------->WOX13(1)  --------->AHL20(2)     ---------->DOF2  --------->AHL20(2)      --------->ANAC55(2)        <---------AHL20(2) <-------- --->YAB1       ----------->GT1   <---------ARR11(3)    <---------ATHB12 --------->AHL20(2) ---------   tgaattgaaaagacaaacaggttatttaataaccaagatatcgttttcatgtgatcaaatcaattatcttatcaaataaattaactaattaagtgatctc  26212600                                                                                     xxxxxxxxxxxxxxx>smallRNA(le3)                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxx>smallRNA(fl3)                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     *TSS                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                               <---------ICU4                        xxxxxxxxxxxxxxxx                                               --------->YAB1                        xxxxxxxxxxxxxxxx                                              <---------YAB1                         xxxxxxxxxxxxxxxx                                              --------->ICU4                         xxxxxxxxxxxxxxxx                                             --------->AHL20(2)                      xxxxxxxxxxxxxxxx                                             <---------AHL20(1)                      xxxxxxxxxxxxxxxx                                             <---------AHL20(2)                      xxxxxxxxxxxxxxxx                                           <---------YAB1                            xxxxxxxxxxxxxxxx                                          --------->AHL20(1)                         xxxxxxxxxxxxxxxx                                        <---------AHL20(1)                          <------NtERF2                                       --------->YAB1                               ----------->RAV1(2)                            --------->ICU4--------->AHL20(2)             <------ZmHOX2a(2)<---------At4g35610     --------->MYB46(3)     <---------ATHB12--------->YAB1   <---------AtLEC2      <---------RAP2.3(1) -ARR11(3)       <---------ANAC46--------->MYB52(1)     <-----------RAV1(1)        ------>NtERF2 <--- >ARR11(3)    <--------P  <---------ICU4--------->AHL20(1)---------->ID1<---------ARR11(3)--------->At4g35610   tccatcaacgactcgggttgcctaaaactaatgactaacaaaaatattataattagttttgttgcatagcaagagatcaaataggcgcctgtagctcagt  26212700                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                             --------->ZAT2                                             ----------->RAV1(2)                                            ------>MYB83                                            ------>MYB46(1)                                         xxxxxxxxxxxxxxx>smallRNA(si3)                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                <------MYB46(1)                                <------MYB83-------->P                                --------->HSFC1(2)                                --------->HSFB2a(1)                                <---------DEAR3(2)                                <---------HSFB2a(1)                                <---------HSFC1(2)            xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxx>smallRNA(fl3)        <---------TOE1(2)   --------->ZAT18 >smallRNA(i)                  <---------TOE2(2)  <---------ANAC58 x>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) >smallRNA(se3)              <---------SPL7<---------ALFIN1 xx>smallRNA(se3)      xxxxxxxxxxxxxxx>smallRNA(si3) xx>smallRNA(s2)       xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(se3) x>smallRNA(se3)       xxxxxxxxxxxxxxx>smallRNA(le3)<------NtERF2             <---------AHL20(2) xxx>smallRNA(le3)    xxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->AHL20(2)<---------AHL20(2) xxx>smallRNA(si3)    xxxxxxxxxxxxxxxxx>smallRNA(fl3)  <----------DOF2        --------->AHL20(2) >smallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(le3)   <---------AHL20(2) x>smallRNA(le3)     xxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ANAC58     <---------AHL20(1) xxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ZAT18       --------->AHL20(1) >smallRNA(fl3)     <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ANAC58       <---------ARR11(3)         - xx>smallRNA(le3)   xxxxxxxxxxxxxxxxx>smallRNA(se3)------>NtERF2         --------->ARR11(3)         < xx>smallRNA(fl3)  --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(s)       <---------AHL20(2)         < xx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)--------->ANAC58     --------->AHL20(2)         - ------MYB46(3) ------>ZmHOX2a(1)  <-------TEIL   <---------ANAC46  --------->AHL20(2)         ------   ggatagagcgtctgtttcctaagcagaaggtcgtaggttcgacccctacctggcgcgcttcattttaaaattcaatatattttaattttgttttgactgg  26212800                                                                                       --------->MYB52(1) -------->HSFC1(2)                           <---------AHL20(2)                --------->YAB1 ---------HSFC1(2)                          --------->AHL20(2)                 --------->AHL20(2) ---------HSFB2a(1)                 --------->ZAT18                           ----------->TBP -------->HSFB2a(1)    ---------->DOF2      <---------AHL20(2)            ------------>CBF       ---- ----->GT1     --------->YAB1       <---------ZAT18   --------->ICU4      <---------YAB1         ----   gaaaattccatgagcattagtaacttaaagcccattagtgggcaaattaaatgggccttattagcctaagcccattatcaataaaaacaaaacagactca  26212900                                                        --------->MYB52(2)                                                  ------>NtERF2                                                 --------->DEAR3(1)                                                 <---------O2                                                 --------->O2                                     ---                                                 ----------->HVH21                              -----                                                <------NtERF2                                 <------                                                --------->ATERF1(1)                           <------                                               ------>NtERF2 <---------ANAC58                 <------                                               <---------ATERF1(1)                            <------                                              <---------DEAR3(1)                              <------                                              --------->DEAR3(1)                              =======                                              ----------->HVH21                               -------                                             <------NtERF2   <---------ANAC46               ------>NtERF2                                           <---------DEAR3(1)<---------ANAC58               ---------                                        <---------ZAT14 <---------ANAC58                   <---------LBD16                                        --------->ZAT14 <---------MYB46(3)                 <---------RAP2.6(2)                                        <---------ZAT2  <---------ANAC58                  <---------LBD16 ----------->RAV1(1)                    --------->ZAT2<-----------HVH21                 <---------ARR14(2) ----->ANAC58              ----------->HVH21<---------ATERF1(1)                       <---------HSFC1(2) ----->ANAC58  *TSS    <---------YAB1<XXXXXXXXXXXXXXXXXXXMIR775                       --------->HSFC1(2)   ggccaacaaaaattagacagaaattaagagtgacaatggcactgctcggcgacgacggtcgtggcttcgatctagccagaaaacttgaagtttccggcgt  26213000    --------->ARR14(2)    <---------ARR14(2)   ------>NtERF2   <------NtERF2  ----------->HVH21 <---------ANAC58 <---------ANAC58 <---------ANAC46 ------>ALFIN1                                                          <----------DOF2 ---->ALFIN1                                                          --------->HSFB2a(1) ---O2                                                                <---------HSFB2a(1) ---ANAC46               <-----------GT1                              <---------HSFC1(2) ---ANAC58        --------->GLK1(2)                                   --------->HSFC1(2) ---ANAC58    <------NtERF2                  <---------YAB1    <---------LBD16 <---------ANAC58 ---TGA1a   <---------DEAR3(1)              --------->ARR11(3) --------->TOE2(2) ===========================================bZIP_DOF           --------->TOE1(2)  <-------GAMYB -->TGA1a <---------ANAC58                  <---------ARR11(3)----------->RAV1(2) <----------DOF2 >LBD16   <---------ANAC58       <----------DOF2         ------>ZmHOX2a(1)     <---------ANAC58   gtggcggacatggctcggcgattctatttactcttctttccaccattatctttcttctccttctacctgggaagctttcatgcgcgttgatgagtccaag  26213100                         ------>NtERF2                         --------->LBD16                         >>>>>>>>>>CAMTA1                         >>>>>>>>>>CAMTA2                         >>>>>>>>>>CAMTA3                         >>>>>>>>>>CAMTA5                        <---------ANAC46                     <---------ARR14(2)                     --------->ARR14(2)                    <---------At4g35610                    --------->At4g35610                    <---------ZAT2                    --------->ZAT2                  <---------ALFIN1              <---------At4g35610              --------->At4g35610                       --------->DEAR3(1)                ------>NtERF2              <---------ZAT2                           <------NtERF2                      <---------At4g35610              --------->ZAT2     <---------ZAT18      ------>NtERF2                      --------->DEAR3(1)           <-------TEIL<---------LBD16            --------->ANAC58                    ------->GAMYB         --------->ARR14(2)   <---------ANAC58    --------->ANAC58         ==========================         <---------ARR14(2)   <---------ANAC58   --------->DAG2            <------ZmHOX2a(2)         <---------GLK1(2)   <-------TEIL       ---------->DOF2 <----------DOF2      --------->MYB46(3)   tctagggctcagattcagctccagctccgcgttcgtgctctcttattcgataaagccaccgtctctcttttccttcgatccaatacaatcgccgcttctt  26213200                                              <---------At4g35610                                              --------->At4g35610                                       <---------ANAC46         <---------YAB1                                    <------NtERF2               --------->ICU4             <---------        <---------At4g35610         <---------DEAR3(1)     --------->YAB1                 <----------        --------->At4g35610     <-----------HVH21      ------>ZmHOX2a(1) ============================     ------>ZmHOX2a(1)         <---------ANAC58        <---------YAB1    <-----------------AGL3 ===========HOX2a_HOX2a        <---------ANAC58      --------->YAB1 --------->MYB52(2)<----------DOF2   catcatcctctgcttccatttctgatgtctcttccgtcgcggtgtctaagctcaatcctaattgtaatgtttgtttcattttttggagctttgttctata  26213300                                                                         <---------ZAT18                                                                         --------->ZAT18                                                                 <---------At4g35610                                                             --------->ANAC46                                                            <---------LBD16                                                           <---------ALFIN1       ------->MYC3                                                          <---------REM1(2)       <-------MYC3                                                       <---------At4g35610       --------->ANAC46           --------->ALFIN1         <---------ANAC58   --------->At4g35610     <---------ALFIN1 ------AGL15                        <---------ANAC58<---------At5g28300  --------->ZAT14 -------AGL1<-------GAMYB   <---------AtMYB61      <-----------GT1       <---------ZAT14     <------- ======MADS_MADS         <---------ARR14(2)     --------->ARR14(2)    <---------ANAC46       <-------   tggcaatttcggtgtgttgaatgtgaggttttggttttgcttcgctctcagatttacagctacacggagatgatgtgtactacacgttggagaatgcttc  26213400  Previous    Next  AGI:  At5g65535.1    Description:  pre-tRNA. tRNA-Arg (anticodon: CCT) Range:  from: 26212685    to: 26212757    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g65540.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO23654.1) Range:  from: 26212915    to: 26215548    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version