Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <-----------GT1                                                                                      -------->HAHB4                                                                                      --------->ATHB51                                                                                      --------->YAB1                                                                                      <--------ATHB1                                                             ------>ZmHOX2a(1)        <--------HAHB4                                                      <---------DAG2                  <---------ICU4                                                      <----------DOF2                <---------YAB1                                                   <-----------GT1                   --------->ICU4                                                  <-----------GT1                    <---------ATHB51           <---------MYB52(1)                  <---------GLK1(2)                     --------->AHL20(2)          --------->TOE2(3)                    <---------ARR14(2)                  --------->YAB1----          --------->TOE1(3)                    --------->ARR14(2)                 <---------AHL20(2) ------>AHL20(2)                               --------->ARR11(3)                 --------->AHL20(2) -------AHL20(2) <-----------GT1               <---------ARR11(3)      <-----------RAV1(1)      <<<<<   ttttttgaaaacccttaattaacaattaagagtttttttcttagagacagattttcctttttcctccaagtttttgttgcacaattaataattacacaat  26127200                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                       <---------AGP1                       --------->ARR11(3)                       <---------ARR11(3)                       --------->AGP1                      <---------CCA1(2)                                      <-----------GT1                --------->AHL20(2)               --------->DAG2         ---------->DOF2                <---------AHL20(2)              ---------->DOF2       <---------AHL20(2)      --------->YAB1 ----------->ARR10       --------->YAB1           --------->AHL20(2) ----->YAB1 --------->AHL20(2)           --------->TOE2(3) --------->HSFB2a(2) <<<<ARR2   <---------AHL20(2)  <---------------AtSPL8     <---------HSFB2a(2)   <----------DOF2   caaatctatagtatttttttaattagatcttaattttgtacagcctaaaataaagtaccatcgagaaactaattaaaagtttcctttttttttggtctct  26127300                                                                         --------->ANAC46                                                                      <---------REM1(2)                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                  <---------AGP1                                                                  --------->ARR14(2)                                                                  --------->ARR11(3)                                                                  <-----------ARR10                                                                  <---------ARR11(3)                                                                  <---------ARR14(2)                                                                  --------->ARR14(3)                <                                                                  <---------ARR14(3)                <                           --------->TOE2(3)                     <---------CCA1(2)                  <                    <---------GLK1(1)                           ----------->ARR10                 <--                    --------->GLK1(1)                        <---------ANAC46                    <---                  <------ZmHOX2a(1)     <---------GLK1(1) =================HOX2a_HOX2a          <----                <---------TOE1(3)       --------->GLK1(1) ================HOX2a_HOX2a          <-----                <---------TOE2(3) <------------CBF        <------ZmHOX2a(1)                    ------          <---------AHL20(2)    --------->ARR11(3)      <---------TOE1(2)--------->ANAC58     ------>NtERF2          --------->AHL20(2)    <---------ARR11(3)    --------->TOE1(2)  --------->ANAC58  ------->GAMYB   accatcgagacattaattaaggaaatctacattagatattggaaatcgaatcgaatcgtaggagcgtagatcttcacgcctcgcgattaacaacgacgcg  26127400      <---------ANAC58      <---------ANAC58      <---------ANAC46   --------->ANAC58 ---------ANAC46         --------->ANAC58           ------------>CBF ---------ANAC58         --------->ANAC46         <---------ZAT14 ---------ANAC58      <------NtERF2               <---------ZAT18                            <XXXXXXX -------ANAC46 <---------MYB52(1)          <------------CBF               ------------>CBF  <-------- ---NtERF2     --------->LBD16           --------->ARR11(3)       ------------>CBF       <---------ANAC58 -------HVH21<---------HSFB2a(2)        --------->YAB1           --------->TOE2(3)       <---------ANAC46 ----O2      --------->HSFB2a(2)    <---------AHL20(2)       <-----------GT1             <---------ANAC58 --->O2      <---------LBD16      ----------->TBP --------->ZAT18--------->ANAC46    <<<<<<<<<TBF1   tcgcgtttgcttgttcccgtaggcaccaaggcatctatataaacatattgagttcacaatgtttcaccctcaattcgacaatacttcttcttcgtgtgtt  26127500                                                                              --------->O2                                                                              --------->ANAC58                                                                              <---------ANAC55(2)                                                                              --------->ANAC58                                                                              --------->ANAC55(1)                                                                              --------->ANAC55(2)                                                                              --------->ANAC46                                                         --------->HSFC1(2)   <---------bZIP60(1)                                                         <---------HSFC1(2)   ----------->GT1                                                        --------->ANAC58  <-----------TGA1                                                    --------->ANAC58      <-----------HVH21                           ----------------->AGL1   --------->ANAC58 <<<<<<<<<TBF1    <---------LBD16    <---------ANAC58       --------->ICU4   <<<<<<<<<TBF1  --------->bZIP60(1) XXXXXXXXXXXXXXMIR2936 <---------ANAC58---------->DOF2  --------->ANAC58 --------->ANAC46 -TOE1(2)      --------->TOE2(3)<---------ATHB12  ---------->DOF2 <<<<<<<<<TBF1   ctctctctcggaaaaaaccctagtttcttgccgaatcaaggcaaagtcacgatgaagcaagcttcttcttcttcttcgtcacgtaattcaacaagtttaa  26127600                                                                                           --------->At4g35610                                                                                         --------->ZAT14                                                                                         <---------ZAT14                                                                                       <XXXXXXXXXXXXX                                                                                       --------->At5g28300                                                                                       <XXXXXXXXXXXXX                                    <----------DOF2                                   ----------->GT1                                 <---------ARR11(3)                         <---------ANAC55(2)                                 --------->ARR11(3)              <-----------HVH21   <---------DEAR3(1)                          <---------At4g35610                    <-----------TGA1  --------->MYB52(1)                       ---------->DOF2                          <---------ANAC58  ----------->HVH21                     --------->ANAC58                    <---------TOE1(3)  --------->ANAC55(2)                     --------->ANAC58    <---------GLK1(2)      <---------ANAC58 <-----------RAV1(2)          <-----------GT1 --------->At4g35610            <---------TOE2(3) <---------LBD16 <---------At4g35610   caaatagacttaaaaccatcttcaagaaagctgaagagctttcgattctctgtgctattgaggtttgcgtcatctattacggaccagacggtgaactgag  26127700                                                                          --------->LBD16                                                                         --------->RAP2.3(3)                                                                         --------->RAP2.3(2)                                                                         --------->ANAC58                                                                         --------->RRTF1(3)                                                                         --------->RRTF1(2)                                                                         --------->ANAC58                                              ---------->DOF2            --------->RAP2.6(2)                                        <---------TOE2(3)             --------->ARR14(2)                                    <----------DOF2                   <---------ARR14(2)                                   <---------ANAC58                 ----------->ARR10                                   <---------ANAC46          --------->ANAC46                       <          <------ZmHOX2a(1)        <---------ANAC58          --------->ANAC58                 <------ XXXXXXXMIR398B/C        ---------->DOF2<---------TOE1(3)    --------->ANAC58  --------->YAB1 ------- XXXXXXXMIR398A       --------->At5g28300----------->GT1 ---------->DOF2--------->RAP2.3(1) ------>ZmHOX2a(1)   aacatggcctaaggagagagagacagtgaaagacatggctttgaggtataaagaggccagaaaacgcaagaagagccgcaatcttcatgagttcctcgag  26127800            <------ZmHOX2a(1)           <----------ID1          --------->ANAC58          --------->ANAC58                                            --------->ANAC46      <------ZmHOX2a(1)                                     --------->YAB1     <----------ID1                                         <---------ICU4 ------ZmHOX2a(1)                                           <--------HAHB4 ---HSFB2a(2)                       >>>>>>>>>TBF1          <---------YAB1  --------->MYB46(3) -->HSFB2a(2)               ------->TEIL                 --------->YAB1------>ZmHOX2a(1)           --   aaggagaaggacaaggacaaggggaagacgaatttgaagaagaattggtatccaaactttgatcattactctcctcaacaactctctcaattgattcagt  26127900                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   <-                                   <---------ANAC46                                               <--                           ---------->DOF2                                                --------->ZAT6                         --------->ANAC58         <------NtERF2                <---------At4g35610<-- ---->ZmHOX2a(1)         --------->ANAC58       <---------ANAC46            <-------TEIL<-----------GT1   ccttagaacggactctttctactctgcaagaaaggcttcgtattgttgaggcgcagaaactacagaacacaaacttggtgcatcagagtttaacaccatc  26128000              ------>MYB83              ----------->RAV1(1)              ------>MYB46(1)            <---------MYB59            --------->MYB46(3)           --------->ANAC58                                                                        --           --------->ANAC46                                                                        -- --------ARR11(1)                                                                                <--- ----------ARR10                                                                                ----- ----->TEIL--------->ANAC58       <---------ARR11(3)         <---------GLK1(1)             <---------At4g35610 ------->ARR14(2)            <---------STY1(2)--------------->AtSPL8                       --------->At4g35610 --------ARR14(2)            --------->STY1(2)--------------->AtSPL3               <---------ALFIN1-- -------CCA1(2)            ------>ZmHOX2a(1)  <---------------AtSPL8             >>>>>>>>>>>>>>>>>LFY -------ARR14(1)<---------ALFIN1  --------->ARR11(3)         <---------At4g35610------->GAMYB  <-----   gtatctgaaccagacccaacacttgaatcctagcaagttctcgctgtttatgtacaaccatggagatgctactctctcacaactcccactgtctgctcca  26128100  Previous    Next  AGI:  At5g65330.1    Description:  AGL78; transcription factor. similar to AGL52, transcription factor [Arabidopsis thaliana] (TAIR:AT4G11250.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 26127552    to: 26128577    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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