Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   -------ATHB12                                                                    <---------At4g35610 ->MYB83                                                                          --------->At4g35610 ->MYB46(1)                                                                     <---------RAP2.6(2) ---------AGL15                                                                <---------At4g35610 -------->AGL15                                          <---------ZAT14       --------->At4g35610 >GAMYB       <---------ARR11(3)        --------->At4g35610                   <---------MYB46(3) <--- --------->AGL3                         <---------At4g35610      --------->AHL20(2)          <------- >ANAC58      --------->ARR11(3)       ------->TEIL      --------->ZAT14     <--------P    <---------AHL20(2) >ANAC58  ---------->DOF2        --------->ATHB12    <------ZmHOX2a(1)     --------->ALFIN1--------->AHL20(2)   atgaagaaaatggaaagacctcaaaaaatgaagaatgagtgcatctgaaaacagaggactactctgaataaatagaggggttgctgctgatatttatttt  26078100         <------NtERF2        --------->LBD16      <---------LBD16      <------NtERF2      ------>NtERF2     <---------RRTF1(1)     ------>NtERF2     <---------RAP2.3(1)                                                ----------->GT1    <---------RRTF1(2)                                                <---------ANAC58    <---------RAP2.3(2)                                               <---------ANAC58         <-----    <---------DEAR3(1)                                               <---------DEAR3(1)    <---------   <---------LBD16                                  --------->ICU4  <------NtERF2      <----------DOF2   --------->At4g35610                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------DAG2   <---------At4g35610                         ----------->GT1    --------->ALFIN1  <-----------GT1  <-----------RAV1(1)                   --------->YAB1         --------->DAG2       ---------->ID1  - --------GT1                      <---------ANAC55(2)         --------->DAG2     <---------------AtSPL8 --YAB1<---------ANAC46           --------->ANAC55(2)        ---------->DOF2     --------------->AtSPL8   tactctgcggcggaattagaaaatttgaaaaacatcatgtattgataagttgtaaatatcagaaaaaggtgggggtgcaaaaatttgtactttttagctt  26078200                                                                                  <---------ICU4                                                                                  --------->YAB1                                                                                 --------->ICU4                                                                               --------->YAB1 -----DOF2                                             <---------AHL20(2) ----------->RAV1(2) --GT1                       --------->ATHB12      --------->AHL20(2) --------->ARR14(2) --------->DOF2    <---------TOE1(2)               <---------AHL20(2) <---------ARR14(2)   ttgaaagaggcaagtttttcgaatgtttgtttgatttgtaaacaatttcagaattatataaacttggttccaaatcccctgtaataatgtcgagctatct  26078300                                        <---------ANAC58                                     --------                                        <---------ANAC58                                    <--------                                 --------->ANAC55(2)                               <---------ANAC58                                <---------TOE2(3)                                  ----------->GT1                               <-----------GT1                                     <---------ANAC58                         <---------AHL20(2)          <---------AHL20(2)            <---------ANAC55(2)                       --------->ANAC55(2)----------->HVH21        <-------TEIL    <---------ANAC46 -                   <----------DOF2    <---------ANAC46    <---------AHL20(2)       --------->ANAC55(2)   gcaatttgaaaactataggggctttacttaattttacgttttgtgtgacacctatttgattttttttgatacgtttggaccagtttcgtaattagaggta  26078400     ----------->GT1    <----------ID1        ---------->DOF2 --------->DAG2    --------->CCA1(2) --->GT1          --------->ARR11(3)                            ------>ZmHOX2a(1)                  << -ZAT6      ----------->GT1      <---------CCA1(2)     *TSS    --------->TOE1(3)           <---------At4g35610 --------->DOF2   <---------ARR11(3)          <-----------ARR10--------->TOE2(3)      <---------GLK1(1)   aataaaggggcaaatagtaagatataagaaaagccttatctcatagagtttcttctcttcattatcctcaaaatcgctcgagagtgagaactctgctctt  26078500                                                           <------NtERF2                                                          <---------ATERF1(1)                                                          <---------ORA47(2)                                                          <---------DEAR4(2)                                                          <---------ERF1                                                          <---------RAP2.3(1)                                                         <---------RRTF1(3)                                                         --------->DEAR3(1)                                                         <---------RAP2.3(2)                                                         <---------ANAC46                                                         <---------RAP2.3(3)                                                         <---------DEAR3(1)                                                        --------->ATERF1(1)                                                        <------NtERF2                                                        <---------ABI4(1)                                                       <---------ATERF1(1)                                                       <---------RAP2.3(1)                                                       <---------DEAR4(2)                                                       <---------ORA47(2)                                                      <---------RAP2.6(2)                                                      <---------RAP2.3(2)                                                      <---------DEAR3(1)                                                     <---------ABI4(1)                                                     --------->ATERF1(1)                                                     --------->SPL7                                                    ------>NtERF2                                                    <---------ATERF1(1)                                                   ----------->HVH21                                                  --------->ATERF1(1)                                                  <------NtERF2                                                 <---------ATERF1(1)                                                 ------>NtERF2           ------>NtERF2                         --------->LBD16           --------->LBD16                      --------->DEAR3(1)          --------->DEAR3(1)                    <---------ANAC46          --------->ANAC46                      <---------LBD16                         <---------ATERF1(1)          --------->ANAC58                     <---------LBD16              --------->ARR14(2)          --------->ANAC58                    ------>NtERF2--------->ATERF1(1)          ------>NtERF2         <---------LBD16                     --------->ANAC46               <---------ARR14(2)        ------>ZmHOX2a(1)                    --------->ANAC58       <---------ANAC46   --------->DEAR3(1)  <<<<<<<<<TBF1                              --------->ANAC58  <----------DOF2      <---------DEAR3(1) <<<<<<<TBF1                                --------->SPL7------>NtERF2    <------ZmHOX2a(1)   cttcttcttcctccgccatagctacaatgcttagtctctcaatcgctacgccggggacggcggcgatttttcgtagaggaactgcttcggcgacttcaac  26078600                                                            ------>NtERF2                                                           <---------DEAR3(1)                                                          <------NtERF2                                                          --------->ATERF1(1)                                                          --------->RAP2.3(1)                                                         ------>NtERF2                                                         <---------DEAR4(2)                                                         <---------RAP2.6(1)                                                         <---------ATERF1(1)                                                         <---------ORA47(2)                                                         <---------ERF1                                                         <---------RAP2.3(1)                                                         <---------RRTF1(1)                                                        <---------ATERF1(2)                                                        <---------RAP2.3(3)                                                        --------->DEAR3(1)                                                        --------->ATERF1(2)                                                        <---------ANAC46                                                        <---------DEAR3(1)                                                        <---------RAP2.3(2)                                                       ------>NtERF2                                                       <---------ABI4(1)                                                       <------NtERF2                                                       --------->ATERF1(1)                                                       --------->RAP2.3(1)                                                      ------>NtERF2                                                      <---------ATERF1(1)                    <-------                                                      <---------RAP2.3(1)                   ---------                                                     <---------DEAR3(1)                     <--------                                                    <---------LBD16                         <--------                                                    ------>NtERF2                          <-------GAMYB                                                    --------->LBD16                       <---------DEAR3(2)                                                   <---------ALFIN1                       <---------MYB46(3)                                                   --------->ANAC46                      <---------DREB2C(2)                                              <-----------HVH21                          <---------DEAR3(1)                               <-----------RAV1(2)<---------LBD16                        <---------MYB46(3)                             ----------->RAV1(1)  <------NtERF2          <------NtERF2  <---------MYB52(1)                      --------->ARR14(2)     <---------ANAC58          <---------DEAR3(1)<---------At1g77200                      <---------ARR14(2)     <---------ANAC58<------NtERF2 <---------ATERF1(1)                      --------->GLK1(2) <---------At4g35610--------->DEAR3(1)          <-----------HVH21               <---------bZIP60(1)      --------->At4g35610----------->HVH21     ------>ZmHOX2a(1)---   ttcgtcttcattccatggtgtcagaatccagcaccaggtttctgctcgcgtccccgcggcggcgacgatatcgtcgtcgtctcctaaaccgtcggtggtg  26078700                                                                           --------->TOE2(3)                                                                           --------->TOE1(3)                                                                        <---------WRKY18(1)                                    ==================================HOX2a_HOX2a                                    <------ZmHOX2a(2)                  --------->WRKY38(1)                             --------->CCA1(2)                         --------->WRKY12                           <---------------------WRI1               --------->MYB111(2)       ---------->DOF2  ---------->DOF2                             <---------MYB46(3) --MYB46(3)        <---------ARR14(2)               ----------->GT1<--------P ---------->DOF2 >ALFIN1           --------->ARR14(2)       --------->MYB52(1)    <-------GAMYB               <------ -AtMYB61         <------NtERF2    --------->ARR11(3)           <---------AtMYB61         <----------DOF2 -DEAR3(1)       --------->LBD16   <---------ARR11(3)          <------ZmHOX2a(1)      --------->At4g35610 ------>ICU4   <---------LBD16 --------->CCA1(2) ------------>AtMYB77<-------GAMYB    <---------At4g35610   atgatgtcgaaaagagaggcggaattgaaagagataagatcgaagacgacggagcagttacaagaggaggttgttgaccttaaaggtgagctctttatgc  26078800                                                                                                   <-                                                                                                  ---                                                                                              -------                 --------->ANAC58                                                <----------DOF2  ---                 --------->ANAC58                                              ======================         <---------GLK1(1)                                                  <-----------GT1   <------      --------->LBD16                                                   <-----------GT1      --------     <---------HSFB2a(2)                                     --------->ANAC58  --------------->AGL15     --------->HSFB2a(2)                        <---------SPL7      <----------DOF2 ---------->DOF2-- ---YAB1 --------->GLK1(1)               <----------DOF2     --------->ANAC58  <---------------AGL15   ttcgtctccagaaatcggcaaggaatgagttcaaatctagcgactttcgtcgtatgaagaaacaagtaagcttttttcttactctttaatgcagaattat  26078900    ----------->GT1                                                             --------->ATHB12 --------------AGL15                                                          <----------DOF2 -------------->AG                                                     --------->CCA1(2) ->ATHB1                                                               --------->GLK1(1) -------------->AGL1                                                   <---------GLK1(1) ===============MADS_MADS                                  <-----------------AGL1 ---ICU4        <----------DOF2                           <-----------GT1   ----------->GT1 ->ICU4  --------->GLK1(1)    <-----------------AGL1 ----------->GT1  <---------ARR14(2)            < ------------->AGL15<---------ZAT6               ---------->DOF2      --------->ARR14(2)            -   tccaaattgtgaaatctactttgtgttatctggtcgattttggcagtctttgaaagggtttaacaaaattgggatatgtggtttattgatggaaacattg  26079000  Previous    Next  AGI:  At5g65210.1    Description:  TGA1; DNA binding / calmodulin binding / transcription factor. Identical to Transcription factor TGA1 (TGA1) [Arabidopsis Thaliana] (GB:Q39237;GB:Q8LBQ9;GB:Q9FJP4); similar to TGA4 (TGACG MOTIF-BINDING FACTOR 4), DNA binding / calmodulin binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G10030.1); similar to 4D11_7 [Brassica rapa subsp. pekinensis] (GB:AAZ67521.1); contains InterPro domain bZIP transcription factor, bZIP-1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) Range:  from: 26074849    to: 26078278    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g65220.1    Description:  ribosomal protein L29 family protein. Identical to 50S ribosomal protein L29, chloroplast precursor (RPL29) [Arabidopsis Thaliana] (GB:Q9FJP3); similar to ribosomal protein L29 [Zea mays] (GB:NP_001104944.1); contains InterPro domain Ribosomal protein L29; (InterPro:IPR001854) Range:  from: 26078455    to: 26079908    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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