Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               ------>ZmHOX2a(2)                                                                             ===============HOX2a_HOX2a                                                      <---------TOE1(3)     <------ZmHOX2a(2)                                               <---------At4g35610          ================HOX2a_HOX2a -------->ARR14(2)                             --------->At4g35610         --------->ARR14(2) ---------ARR14(2)                             <---------ZAT2              --------->ARR11(3) -------RAP2.3(1)                           <---------At4g35610            <---------GLK1(2) ------DEAR3(1)                             --------->At4g35610   <---------ARR14(2) ------RAP2.3(2)                           <-----------RAV1(1)    --------->ARR14(2) ------>ZmHOX2a(1) ---->SPL7                               <---------ZAT2        =============================HOX2a_HOX2a --->SPL1(1)                             ----------->RAV1(2)   ------>ZmHOX2a(2)     <---------------AGL15 --->ALFIN1                              --------->ZAT2        =======================HOX2a_HOX2a ----SPL1(1)        <---------At4g35610  <---------At4g35610 --------->ARR14(2)      --------------->AGL15 ---SPL7<---------GLK1(1)           --------->DAG2    <---------TOE2(3)    <---------ARR11(3) --ANAC46           --------->At4g35610  --------->At4g35610 <---------ARR14(2)------>ZmHOX2a(1) --ANAC58    <-----------RAV1(1)   ---------->DOF2--------->At4g35610      <---------ARR14(2) --ANAC58 <-------TEIL          <------ZmHOX2a(1) <---------At4g35610    ----------->ARR10       ----   cggctcttggagttcatgttgcagcttatgaagaggataaagcagctgctgctgctaaggctggatcggatttagtagatcctcttcctaagaatggaac  25989500                                                                         <---------HSFB2a(2)                               --------->ANAC58                          --------->HSFB2a(2)                           --------->CCA1(2)                     --------->DOF5.7(2)                          --------->ARR14(2)                     <---------MYB52(1)                          <-----------ARR10                     <-------GAMYB                         <------ZmHOX2a(1)                     ------>ZmHOX2a(2)                 <---                --------->ANAC58                              <------ZmHOX2a(2)               -------             --------->ZAT14   --------->ANAC46              --------->ARR11(3)    --------->WOX13(1)             <---------ZAT14   --------->ANAC58    --------->ZAT14       <---------HSFC1(1)   <------         --------->ZAT6<---------TOE2(3)           <---------ZAT14 <---------ARR11(3)<---------ATHB12       ----------->RAV1(1)<---------ARR14(2)       <---------REM1(2)     --------->HSFC1(1)---------- ----->TOE1(2)  --------->ANAC58         <---------AHL20(2)  <---------ARR11(3)  <------ZmHOX2a(2)   ataagagaacaacactacaggcattgaggatataagcaaatgttttattcttctacacagagagatcgttatcttctagagggatcaatgaataaaagct  25989600                                  <---------MYB52(1)                            ------>ZmHOX2a(2)                           <---------GLK1(1)                           --------->GLK1(1)                          <---------AGP1                          --------->ARR11(3)                          --------->ARR14(2)             --------->ETT(2)                           < ----TEIL --------->ZAT2  <---------ARR11(3)        ------->MYC3                               <----- -->HSFC1(2)              <---------ARR14(2)        <-------MYC3     <---------MYB59      <---------ANAC58 ---HSFC1(2)      --------->GLK1(2)                --------->ANAC46  --------->TOE2(3)    <---------ANAC58 >DOF2    <---------ZAT2  ------->TEIL         --------->CCA1(2)   ------->TEIL          ---------->ID1   tcgtccatttctagctggagattccatggatctccagttagtgcaagtgatacacgttgtctacatttgtacctaagtttctgcattttttgtcgttctt  25989700                                                                                            <--------                                                            <---------ARR14(2)              ---------                                               --------->DOF5.7(2)                         <---------    <----------ARF1                           ----------->GT1                             <----------DOF2 ---------ZAT6                               ----------->GT1--------->ARR14(2)      ----------->RAV1(2) -----DOF2                             <---------ANAC46     ------->TEIL        ---------->DOF2   ttgtgttagacaagtcttggaccctagatgatacttcagtttcttagacgttaaatttgatgaatccgaacttgtttgatttcaaagcctggcctttctg  25989800                                                                             <---------ZAT14                                                                             --------->ZAT14                                                           <---------------AtSPL8                                                        --------->YAB1       <---------ZAT18                                                     --------->YAB1          --------->ZAT18                                  <-----------GT1 ----------->GT1        <---------------AtSPL8------                             <-------GAMYB     --------->ARR14(2)     --------->ARR11(3)       ------                            --------->MYB52(2) <---------ARR14(2)   <---------AHL20(1)     --------->AtLEC2                       <----------DOF2      <---------TOE2(2)       <---------ARR11(3)     --------->ANAC58                      <---------ANAC58      <---------TOE1(2)       --------->AHL20(1)     --------->ANAC58 -ARR14(2)            <---------ANAC58    ------->GAMYB<---------YAB1<---------CCA1(2)    --------->WOX13(1) >ARR14(2)            <---------ANAC46   --------->ANAC46  --------------->AtSPL8       --------->WRKY18(1) -DOF2      <---------AtLEC2<---------MYB46(3)<------ZmHOX2a(1)------------>CBF   --------->ANAC46   caatgtgtttttgtgcatgttctggcttgtttgttgttactcaacgcaggatttgttataatatgtacaatatatctagtacacacataagtcaagcaag  25989900                                                                    --------->ARR14(2)                                                                    <---------ARR14(2)                                                                  <---------ZAT18                                                                <---------ZAT2                                                                --------->ZAT2      --------->LBD16             --------->ANAC58              <---------At4g35610     <---------ANAC58     <------NtERF2         xxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------ANAC46   <---------DEAR3(1)    <---------ARR14(2)xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------ANAC58--------->DAG2           --------->GLK1(2) --------->At4g35610    xxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------GLK1(2)<-----------RAV1(2)    xxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <<<<<<    xxxxxxxxxxxxxxxxxx>smallRNA(le3)       xxxxxxxxxxxxxxxx>smallRNA(s)                    <---------AHL20(2)    xxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxx>smallRNA(se3)                <---------YAB1    xxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxx>smallRNA(i)                  <---------AHL20(2)    *TSS       <---------ATHB12   --------->ANAC46        <------ZmHOX2a(2)     <---------At4g35610 --->ANAC58  --------->MYB52(1)   --------->ANAC58       --------->ARR14(2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --->ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   taagactccgtggcccaatggataaggcgctggtctacgaaaccagagattctgggttcgatccccagcggagtcgctcttcatctactatttttatttt  25990000                 ---------->DOF2               <---------YAB1            --------------->AGL15            <---------------AGL15           <---------ANAC58               ---------->DOF2                                    <-------           <---------ANAC58        --------->ALFIN1                                        --------->TOE2(3)    --------->ANAC58              --------->TOE1(2)             <---------YAB1          ------>MYB46(1)    --------->ANAC46              ------->MYC2                <---------AHL20(2)        ------>MYB83    --------->ANAC58              ------->MYC3               --------->ICU4           <---------MYB59   <---------LBD16                <-------MYC2               --------->AHL20(2)       <---------MYB46(2)  <---------ANAC58                <-------MYC3         <-------TEIL               ----------->HVH21  <---------ANAC46        <---------AHL20(2)         <---------GLK1(2)          <---------At4g35610  <---------ANAC58       <---------AHL20(2)          <---------ARR14(2)         --------->At4g35610 <<<<GT-3b <---------ANAC46     ------->TEIL         --------->ARR14(2)  ---------->DOF2--------->MYB52(1)   tcttacgcgcattgcttataaaagttttttaatgaacgtgggataaaagttttcagattcgtatttattatttcaaaaagacagatgacctaacctcatt  25990100                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                             ------->GAMYB                                                                                             <-------                                                                                            ---------                                                                                           ------>MYB83                                                                                           -------->P                                                                                           ==========                                                                                           ----------                             <---------AHL20(1)                      <-----------HVH21     ------>MYB46(1)                             --------->AHL20(1)                   <---------ALFIN1       --------->DEAR3(1)                             <---------AHL20(2)               --------->At4g35610 ---------->DOF2----                 <-----------GT1  <---------AHL20(2)        <------------AtMYB77  ===================           <---------DAG2   --------->AHL20(2)              =========================================           <----------DOF2  <---------AHL20(2)            --------->MYB52(1)   --------->At4g35610 --ICU4  ------->TEIL       --------->YAB1                <-----------GT1      <---------At4g35610   actcgtgtatggacttttttttccttcaaattatattttatgaaatttgagtagacgaagtaactgctccccttcagatttagctaaagagccaaccacg  25990200   <---------ANAC46   ----------->GT1 -->MYC2 ---MYC2 -->MYC3 ---PIF5 ---MYC3 -->PIF5 ----O2 <---------ARR14(2) ----TGA1a --->ANAC46 --->TGA1a --->O2 --------->ARR14(2) ----ANAC55(2) --ALFIN1                             --------->TOE1(2) >MYB46(3)               <---------ANAC58                  --------->GLK1(2) ====MYC_MYB             <---------ANAC58                  <---------ARR11(3) ------->PIF3(1)         <---------ANAC46        <---------TOE2(3)                                  < ------->HVH21    ---------->ID1      --------->TOE2(2)    --------->ARR11(3)                 <------ZmHOX2a(2) ====bZIP_DOF   <-----------RAV1(1)  --------->YAB1    --------->YAB1        <---------AHL20(2) ----- ====MYC_MYB------>ZmHOX2a(1)    --------->MYB46(3)   ----------->GT1        <---------YAB1  <-------   tgaagtcgtgaatcctctctgtcgttttcgtattaacaaacataagaaattaagaaatgaaaatctcgttttcttatgtataattgttttatatcgatca  25990300                                                                                            <--------                                                                                           <---------YAB1                                                                                     --------->ICU4                                      <---------ARR11(3)                      <---------ZAT18                                    --------->ICU4                            <---------ZAT14 --------->ARR14(2)                 <---------YAB1                      --------->DAG2   --------->YAB1 <---------ARR14(2)               --------->YAB1                       ---------->DOF2  <---------YAB1 ---------MYB52(1)              --------->ARR11(3)                 <---------ANAC55(2)<---------ICU4 ---->MYB52(1)                  <---------ARR11(3)           <---------YAB1   --------->ZAT18 ----HVH21           <---------At4g35610     <---------TOE2(3)<---------ICU4  --------->ZAT14     <--   ccggtttctctaggtctaggtatagctgttccaatatcatgatttttaagtttagttttcaacatcattaagtaaaagtgtgaactcattatcatcatcg  25990400  Previous    Next  AGI:  At5g65010.1    Description:  ASN2 (ASPARAGINE SYNTHETASE 2); asparagine synthase (glutamine-hydrolyzing). similar to ASN3 (ASPARAGINE SYNTHETASE 3), asparagine synthase (glutamine-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT5G10240.2); similar to ASN1 (DARK INDUCIBLE 6) [Arabidopsis thaliana] (TAIR:AT3G47340.1); similar to ASN3 (ASPARAGINE SYNTHETASE 3), asparagine synthase (glutamine-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT5G10240.1); similar to unknown [Populus trichocarpa] (GB:ABK95431.1); similar to 52O08_30 [Brassica rapa subsp. pekinensis] (GB:AAZ67575.1); similar to 117M18_15 [Brassica rapa] (GB:AAZ66934.1); contains InterPro domain Asparagine synthase, glutam Range:  from: 25986415    to: 25989801    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g65015.1    Description:  pre-tRNA. tRNA-Arg (anticodon: ACG) Range:  from: 25989904    to: 25989976    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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