Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------ANAC58                                                                     <---------ANAC58                                      ------->GAMYB          --------->PCF5                                   --------->MYB52(1)   ----------->RAV1(2)                     <---------MYB52(1)              --------->ARR14(2)      ------>ZmHOX2a(1)          <---------MYB52(2)  <---------ARR14(2) -ALFIN1            --------->TOE2(3)--------->MYB46(3) <---------ANAC46    ------>ZmHOX2a(1) -HVH21   <---------ICU4       ------------------------>ANAC81    <---------MYB52(1)            <----   tcttcttcctcaccattactctcgttaatcgataaactaacagacagaaacagaggttccctggtcccgtttcgtctcctaaacttcaaaaaactcgact  25977500                                                                                            <--------                                                                                           --------->LBD16                                                                                          --------->DEAR3(1)                                                                                         --------->ANAC46                                                                                        ------>MYB83                                                                                        ------>MYB46(1)                                                                                       --------->MYB55(1)                          --------->KAN4(1)                                            --------->ANAC46                          --------->MYB46(3)                                          ------->GAMYB                          --------->HSFB2a(1)                                         --------->MYB46(3)                          <---------HSFB2a(1)                                       --------->ANAC58                          <---------KAN4(1)                                         --------->ANAC46                     --------->ANAC55(2)                                            --------->ANAC58                     --------->ANAC46                                               -------->P                    <---------LBD16                                               --------->MYB46(3)                  ----------->HVH21    ---------->DOF2                      --------->HSFC1(1)<------             --------->ANAC58   ------>ZmHOX2a(1)                           <---------HSFB2a(2)         ----------->RAV1(1)   --------->TOE2(2)                            --------->HSFB2a(2)  ----        ----------->HVH21<---------KAN4(2)  ---------->DOF2           --------->GLK1(2)<---------ALFIN1    <---------ZAT14--------->MYB52(1)--------->ANAC46                <---------GLK1(2)<---------MYB55(2) ------DOF2  --------->ANAC58  --------->TOE1(2)           <------ZmHOX2a(1)<---------HSFC1(1)-------   tttgactgaagcgacacgaattgacggaacaatccttcgacgaaagaaaagagacagacgaggaaggaagagattcttcgagaaacaacccaccgcagat  25977600                                          --------->GLK1(1)                                        <---------At4g35610   >>>>>>>>>>>>>>>>>LFY                 --------->At4g35610  <-----------GT1                  <---------ANAC58 --------->WRKY38(1)          --------->ATHB12                      <-----------GT1 ----------->HVH21           <---------YAB1                  --------->ANAC58 ---RAV1(2)                 ------>ZmHOX2a(2)                --------->ANAC46 ---At4g35610              <---------At4g35610               --------->ANAC58              <--------- ----->ATHB12     <---------ATHB12 <---------ANAC58     --------->ANAC46                <---------ARR14(2) -->At4g35610 ------>ZmHOX2a(2) <---------WOX13(1)  <------ZmHOX2a(2)                   --------->ARR14(2)   gatttgaccattgtgatctaatgactctgatctgattgcttcagctatccatcgatcaaggccacgcattttactaaattttcgatggcaaattcgacaa  25977700                                                                    <------ZmHOX2a(1)                                                                  <---------TOE1(3)                                                                  <---------TOE2(3)                                                              =============HOX2a_HOX2a                                                              ------>ZmHOX2a(2)                                                             ==============HOX2a_HOX2a      ---------                                                             <------ZmHOX2a(2)             <---------YAB1                                                            <---------ARR14(2)           <---------ICU4                                                            --------->ARR14(2)         --------->AHL20(1)                                                            --------->ARR11(3)         <---------AHL20(2)                                                            <---------ARR11(3)         <---------YAB1                                                       <---------MYB52(1)             --------->AHL20(2)    ---------->DOF2                                  <-----------RAV1(1)              --------->YAB1 -ID1               <-----------GT1                  <---------MYB46(3)            --------->YAB1   attgagcaaagtcgaaaacttttaacaagacccaagaacaaattggattcaatagctgttgggatcttaaggaagacgagaagactaataatattgatag  25977800                                                                                         <------MYB83                                                                                         <---------MYB46(3)                                                                                         <------MYB46(1)                                                                                        <---------AtMYB61                                                                                       <--------P                                                                                    <---------TOE2(3)                                           --------->ARR11(3)                       --------->MYB59                                           <---------ARR11(3)                       <---------TOE1(3)                                          <---------CCA1(2)                    --------->ARR11(3)                                     <----------DOF2                           <---------ARR11(3)                   <----------DOF2<---------TOE1(3)                            --------->AHL20(1)     --------->ANAC46    ---------->DOF2--------->YAB1                *TSS     <---------AHL20(1) >YAB1     <---------MYB46(3) <----------DOF2                  --------->ZAT6--------->GLK1(2)     --   tttatacacacagtagttgctctttctcaaagctttaagctttcatatctctcgctctctctctcacactaaaacagagaatattttaggttggttttgg  25977900                                                       --------->TGA2(2)                                                      <-----------TGA1                                                     --------->ANAC55(1)                                                     --------->ANAC55(2)                                                     --------->ANAC58                                                     --------->bZIP60(2)                                                     --------->ANAC58                                                     --------->ANAC46                                                     <---------ANAC55(2)                                                     <---------O2                                                     --------->TGA1a                                                     --------->O2                                                    <-----------bZIP910(1)                                                ----------->HVH21                                        --------->ICU4<-----------HVH21                                      --------------->AGL15                                      <---------------AGL15                  =============================================bZIP_DOF                  <---------DAG2     ----------------->AGL1            --------->ALFIN1         ----------------->AGL3          <---------bZIP60(2)        ------------>CBF<---------TGA1a          <---------ANAC58           <-----------------AGL2          <---------ANAC46   ----------->TGA1<---------MYB46(3)          <---------ANAC58   ----------->HVH21 <---------WOX13(1)                       --------->AHL20(2)       ----------->HVH21   --------->At4g35610<---------ANAC58          <---------MYB52(1)     --------->ALFIN1      --------->ZAT2 <------------CBF            <---------ANAC58  <---------ATHB51   --------->ALFIN1        <---------At4g35610<---------ANAC58        <---------ANAC58  <---------AHL20(2) -------->DOF2    <----------DOF2   ------>NtERF2   <-----------STF1  <---------ANAC46--------->YAB1   ttaaagtgtgtgacttggtgctttttttctgctgacgatgccaatattggttgacacgtcatcgtctatatttcgtttattttgacaaaaataattcttt  25978000                                                                       --------->AHL20(1)                                                                       <---------ARR11(3)                       <---------YAB1   <---------ARR11(3)  --------->ATHB12        ------>ZmHOX2a(1)                       --------->ICU4   --------->ARR11(3) <---------YAB1 <-----------GT1            <-------TEIL     <<<<<<<<<<<<<<<<<LFY  --------->CCA1(2)   <---------AHL20(1)       -----   cttcatagaatgcatacatttcttcatgatcagacattggaagaactcacaagataagagtttgattagacaaaatattccatctcctagtttgttatac  25978100                                                                                <---------ANAC46                                                                            <------ZmHOX2a(1)                                                                           --------->At4g35610                                                                         <-----------RAV1(2)                                                                        --------->ZAT2  --------->At4g35610                                                                        <---------ZAT2  <---------At4g35610                                                                        <---------At4g35610   -------          ----------->GT1             <---------YAB1  <---------TOE2(3) --------->At4g35610<------ZmHOX2a(1)         --------->ALFIN1     <----------DOF2  <-------MYC3           <-----------RAV1(2) <----------ID1 ---->ANAC46               <-----------GT1     ------->MYC3       <------ZmHOX2a(1)----------->HVH21   taaacagaagagtggtcaaaagtttttttttactttgtttttgattccatgtgtttgagattgtgagaggagtcagcaggagccttggacagaggacaaa  25978200                                                                ------>ZmHOX2a(2)                                                                =====================HOX2a_HOX2a                                                               <------ZmHOX2a(2)                                                               ======================HOX2a_HOX2a                                                              <---------ARR11(3)                                                              --------->ARR14(2)                                                              <---------ARR14(3)                                                              --------->ARR14(3)                                                              --------->ARR11(3)                                                              <-----------ARR10                                                   ===================HOX2a_HOX2a                                            ---------->DOF2   <---------ARR14(2)                                       --------->At4g35610    <---------AGP1                                      ----------->RAV1(1)     --------->AGP1                                     <------NtERF2 ------>ZmHOX2a(1)                 <---------ARR11(3)                                    --------->At4g35610      <---------ARR14(1)      <---------GLK1(2)                                    --------->LBD16====================HOX2a_HOX2a   --------->ARR11(3)       ---------->DOF2             --------->DEAR3(1)        <---------CCA1(2)      <---------RVE1(1)    --------->ANAC55(2)            --------->ANAC46<----------DOF2    <---------MYB52(1) <-----------GT1    <---------ANAC55(2)            --------->RAP2.6(2)      ----------->ARR10    --------->LBD16    < <---------MYB52(1)              --------->At4g35610      <---------At4g35610   --------->HSFB2a(2) < --->DOF2     <----------DOF2    <---------At4g35610      --------->At4g35610 ------>ZmHOX2a(1)    <-   ggcgttaagtaaaggcctttgctctccaacaagttagccgcagcatcaaagtcctttgtaagcagatcttccattacttcctccagagattttgccatcg  25978300                                                                                       <---------ANAC58                                                                                       <---------ANAC58                                    --------->ANAC58                               <----------DOF2                                    --------->ANAC46                            <---------ARR11(3)                                --------->YAB1                                  --------->ARR14(2)                        --------->ARR14(2)                                      <---------ARR14(2)           ------->TEIL <---------ARR11(1)                                      ------->TEIL   <-----        <---------ANAC46<---------ARR14(2)                                 <---------ANAC58   ------- ---------At4g35610    <---------CCA1(2)                   <---------MYB52(2)  <---------CCA1(2)<---- ---------ZAT2         <---------ARR14(1)        --------->ZAT6            <---------ANAC58  <------- --------DEAR3(2)----------->HVH21  --------->ANAC58  --------->ANAC46     <---------ANAC46  --------   tctgctcgtgatgtatgtagtgaccgtatccctatcacaaacaacacattcactctaagaaacaaacatatactatatcgtgtatctttgcttcagatac  25978400  Previous    Next  AGI:  At5g64970.1    Description:  mitochondrial substrate carrier family protein. similar to binding [Arabidopsis thaliana] (TAIR:AT1G78180.1); similar to 80C09_21 [Brassica rapa subsp. pekinensis] (GB:AAZ41832.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067) Range:  from: 25975251    to: 25977870    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g64980.1    Description:  transcription regulator. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43069.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain UBA-like (InterPro:IPR009060) Range:  from: 25978001    to: 25980461    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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