Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                -----      <---------SPL7                                                                            ----- -------->ZAT14                                                                                 ----- ---------ZAT18                                                                                 ----- -------TEIL                                                         --------->LBD16           <----- ---------ZAT14                                                      ------>NtERF2             <----- -----GAMYB                                                        <---------LBD16             ------ ------MYB46(3)                                                   ------->GAMYB               <------ ------DEAR3(2)                                                 ------>MYB46(1)               ------- -----DEAR3(1)                                            --------->At4g35610              <---------ARR14(2) ----MYB52(1)          <------ZmHOX2a(1)                  <---------At4g35610      --------->WOX13(1) >MYB46(3)            ----------->GT1           <---------AtLEC2-------->P     ------->GAMYB <------- -LBD16 --------->MYB52(1)                     <-------TEIL     ------>MYB83----------->RAV1(1)------ >DEAR3(2)           <---------TOE2(3)     <---------DEAR3(1) <---------ALFIN1--------->MYB46(3)-----   ggttcactcgtaccggtttgactaaggaaaaacttgacaatctcatcggtgcatgacttaagctccaaccccgcgttccaacagtccatcaagtttccgg  25889900     --------->HSFB2a(1)     --------->ICU4     <---------KAN4(1)     --------->KAN4(1)     <---------HSFB2a(1)    <---------KAN4(2)  <------NtERF2 --------->LBD16 -------->RAP2.3(2) --------LBD16 ------->RAP2.3(1) -----NtERF2 ------->ATERF1(1) -------RAP2.3(1) -------ATERF1(1) -------RRTF1(1) --->NtERF2 -------ERF1 -------RAP2.6(1) ----->DEAR3(1)                                                                          --------->TOE2(3) ------DEAR3(1)                                                                         --------->ATHB12 ---->ERF1 --------->LBD16                                                              <---------ICU4 ---->RAP2.3(1)                                        --------->YAB1                  <---------YAB1 ---->RAP2.6(1)                                   <------NtERF2                        --------->ICU4 ---->RRTF1(1)                                   ----------->RAV1(1)                 --------->TGA2(1) ----ATERF1(1)                                   ------>NtERF2                       --------->bZIP60(1) ----RAP2.3(1)           <---------ZAT14        --------->ETT(2)                     <---------TGA2(1) --->LBD16<---------ANAC55(2)                   ----------->HVH21                    <---------bZIP60(1) ---RAP2.3(2)            --------->ZAT14       <------NtERF2  ----------->HVH21   ----------->HVH21 -->ANAC46--------->ANAC55(2)                 <---------ATERF1(1)        --------->CCA1(2) --LBD16 =====================================HOX2a_HOX2a<---------bZIP60(1)    --------->CCA1(2) >NtERF2 ------>ZmHOX2a(2)                   <---------DEAR3(1) ---------->DOF2<---------ARR11(3) ---->ATERF1(1)       <---------ANAC46 ------>ZmHOX2a(1) --------->bZIP60(1)   --------->ARR11(3)   cgccggaatgatccgtagccatcttcgtgaactggagagtccttccctcggcgacagtgatgacatgaaaggtcgatatgagatatgacatcattagaaa  25890000                                                                                             --------                                                                                             --------                                                                                   <---------bZIP60(1)           <---------HSFC1(2)                                                      <---------O2           <---------HSFB2a(1)                       <---------TOE2(3)             <---------bZIP60(2)           --------->HSFC1(2)                   <---------ZAT6                     --------->bZIP60(1)     --------->At4g35610                  <----------DOF2                 <---------YAB1    <--------  --------->At4g35610                 <---------ANAC58                 --------->GLK1(2)<---------ANAC46  <---------At4g35610                 <---------ANAC58                 --------->ICU4----------->HVH21   tgagagcagaagaggcttcgaagtagatttagtagccattgcttctttttgtgttatggattttttgtaagagattatgagtgtgatgtgacgaatatat  25890100                                                        --------->YAB1           <---------At5g28300                                                       <---------YAB1           <-----------GT1                                                     <---------ICU4         <---------AHL20(2)                                                     --------->YAB1         --------->AHL20(2)                                                    --------->ICU4         --------->AHL20(2)                      --------->DAG2             --------->ICU4            <---------AHL20(2)                     ---------->DOF2        <---------REM1(1)              <---------AHL20(1)     --------->ARR11(3)                  <-----------RAV1(1)        ----------->GT1 ->ARR11(3)       --------->ANAC58      <---------TOE2(3)           <---------MYB46(3)         <----- ->AHL20(1)       --------->ANAC58<---------ANAC46<---------ICU4 ------>ZmHOX2a(2)           ------>ZmHOX2a(1) ---TBP  <---------YAB1          ---------->ID1----------->GT1   ===================================HOX2a_HOX2a   agtagaagattatgagggagacgaaaagtttttttgtcgtttaatgttgtagtaattatcacagtgatcgtggttaatttaattaccctctaatcctcta  25890200                      --------->AHL20(1)                                                           --                      <---------AHL20(1)                                                           <-                      --------->AHL20(2)                                                          <--                     --------->AHL20(2)                                                           ---                     <---------AHL20(2)          --------->ANAC58                             -------                 --------->ICU4    --------->ANAC58                               <---------GLK1(1)--          <---------ANAC58         --------->ANAC58                               --------->GLK1(1)<-          <---------ANAC58      <---------MYB52(1)   <------------CBF         <---------TOE2(3)------        <---------At5g28300   --------->ANAC46   --------->ANAC46         <----------DOF2     <------       <-----------GT1<---------AHL20(2)  --------->ARR14(2)              <---------DAG2  --------->AHL20(2) ----CCA1(2)    <----------DOF2<-----------HVH21 --------->ANAC58  <------------CBF       <---------AHL20(2)   tctaagcatttaccgtgtctttattaaattatccgttacgcccagttttgcaagctattgggccaactaaattgggctttatggaaacccattaaaataa  25890300        <---------YAB1                                                                   <------NtERF2     <---------YAB1                                                                     ------>NtERF2   -------->ATHB1                                                                      --------->DEAR3(1)   --------->YAB1                                                                     --------->ATERF1(1)   <---------ICU4                                                                     --------->DEAR3(2)  <---------ATHB51                                                                   <---------ATERF1(1)  --------->AHL20(2)                                                                 --------->At4g35610  --------->ICU4                                                                   --------->ATERF1(1)  <---------AHL20(2)                                                              <---------At4g35610 ------->AHL20(1)                                                                 <---------ZAT2 --------AHL20(1)                                                                 --------->At4g35610 -------AHL20(2)                                                                  --------->ZAT2 ------>AHL20(2)                                                                  <---------ATERF1(1) -->AHL20(2)                                            <-----------RAV1(2)      <---------ARR14(2) ------->AHL20(2)                                     <-----------HVH21          --------->ARR14(2) --------AHL20(2)                        --------->ANAC55(2)                  <---------DEAR3(1) --->AHL20(2)                            <---------ANAC55(2)               ----------->HVH21   <----- ---AHL20(2)      <---------ANAC46    *TSS <---------YAB1          --------->CCA1(2) ------>NtERF2<--   ataaattattatgtttagtttagtataagcccgttctatggaaacgtgattgtaagtttcaggcgagagagatgagcgcgacggagctgccgacgaagga  25890400                            <-------GAMYB                           <---------MYB46(3)                           <---------DEAR3(2)                          <---------DEAR3(1)                          <---------RAP2.6(2)                         <---------ABI4(1)                         <------NtERF2                       <---------DEAR3(1)          ----------->HVH21                       <---------RAP2.3(3)         ----------->TGA1                       --------->ALFIN1  ----------->GT1                                            -                    --------->ALFIN1  --------->DEAR3(1)                        --------->ANAC58    <                  --------->TGA1a     <---------ANAC46                 --------->TGA1a         ------                  ==================MYC_MYB    <---------At5g28300     ----------->RAV1(2)     ------          ---------->DOF2--------->ATERF1(1)  --------->MYB52(1)       <---------ZAT2      --------->ARR14(2)          ==================bZIP_DOF <------NtERF2<-----------HVH21    --------->ZAT2      <---------ARR14(2) --------->ANAC58 --------->O2      <---------RAP2.3(1)             ----------->HVH21------>ZmHOX2a(2) --------->ANAC58 <---------TGA1a  <---------DEAR3(1)      <---------HSFC1(2)   --------->ANAC58   <- -ZmHOX2a(1)      <---------O2    <---------At4g35610 <---------ANAC46 <---------TGA1a   --------->HSFB2a(1) ----NtERF2  --------->ANAC46     --------->At4g35610 <---------ANAC55(2)<-----------RAV1(1)  -------   ggcacacatacttaaaggccacgagggggcggttttagcggcgaggtttaacggtgacggaaactacgctctcacctgtggcaaggatcgaactatccgc  25890500             --------->LBD16         <---------ALFIN1                                   ------>NtERF2        <---------ABI4(2)                                  ----------->HVH21       --------->ANAC46                                    --------->ANAC46       --------->ANAC58           ------>MYB46(1)         --------->LBD16       --------->ANAC58   --------->YAB1                  <------NtERF2 -------->HSFB2a(2)       <---------ICU4                --------->ZAT18                            -- ---------HSFB2a(2) --------->TOE2(3)                   <---------LBD16                            -- >NtERF2--------->LBD16  <---------ATHB12        <------NtERF2                          <---------At4g35610 --->LBD16  <---------ANAC46  --------->ARR11(3) --------->LBD16            <---------ANAC46<-------- --------LBD16      --------->YAB1------>MYB83   ------>NtERF2   <-------TEIL  <---------TOE1(2)   <- -->ANAC46  --------->DEAR3(1)<---------ARR11(3)--------->RAP2.6(2)    <-----------GT1  --------->At4g35610   ctctggaacccgcaccgtggaatcttaatcaagacctacaaatctcatggccgcgaagtccgcgacgttcatgttacttcgtatgaaatcagctctttct  25890600                                                                                      --------->GLK1(2)                                                                                     <---------ARR14(2)                                                                                     <---------GLK1(2)                                                                               <---------AHL20(2)             <----------DOF2                                <---------TOE2(3)  --------->ATHB12<----- --------->RAV1(2)                            <---------ZAT14                 --------->AHL20(1) ------->At4g35610                            --------->ZAT14                 <---------AHL20(1) --DOF2   <-----------GT1                     <---------At4g35610             --------->AHL20(2) --------At4g35610<-----------GT1<---------YAB1       <---------TOE2(3)       <---------AHL20(2)    <   catctgatgttttttcttttgaactattcgtgattttgattcaatttctgcagtttaagtttaagtttagatagtccaaatttattggattctggttctg  25890700               <----------DOF2              <---------ANAC58         <-----------RAV1(1)         <---------REM1(1)         <---------MYB46(3)                                                                <---------ANAC46      <---------MYB46(3)                                                                   <---------ANAC58     <---------WOX13(1)                                                           <---------YAB1    <---------ANAC58                                                  ---------->ID1  <-----------RAV1(1)    <---------ANAC58         <---------------AtSPL8       <---------HSFB2a(2)   --------->YAB1   --------->ATHB12 <---------At4g35610        --------->GLK1(2)    <-----------RAV1(1)    <---------ANAC58  <---------YAB1    --------->At4g35610        ------->TEIL--------->LBD16      <--------ATHB1 <----- ----ANAC46   <---------ANAC58                <---------GLK1(2) <----------DOF2--------->ICU4  <----- -------GAMYB <---------ANAC46   <-------TEIL <---------ARR14(1)<---------DAG2 <---------ATHB12<-----   tgtgttgattgttgttgctttcagcttaaattgagtacataagagaacgaatctcacattcccgagctttttgttgtttcaatgatttttgttgcttgct  25890800  Previous    Next  AGI:  At5g64720.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G21740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71715.1); contains InterPro domain Protein of unknown function DUF1278 (InterPro:IPR010701) Range:  from: 25889572    to: 25890039    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g64730.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G02730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45649.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 25890338    to: 25892493    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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