Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                                                                                         <---------ICU4                      ---------->DOF2                                                    --------->YAB1                 <---------CCA1(2)                                                       <--------HAHB4               --------->O2                             --------->DOF5.7(2)             <------ZmHOX2a(2)          <---------ANAC55(2)                           <-----------HVH21     <-------TEIL  ---------          --------->ANAC46                           ------->TEIL          <---------ANAC46 ---------          --------->ANAC55(2)    ------->TEIL<-------MYC3                  <---------ANAC58--------->ICU4 ----------DOF2<---------O2      <-------TEIL------->MYC3<-------TEIL      <---------ANAC58<---------YAB1   ttctttagtcatacgtctcgtctctaaaggcaatgtacatatagacacatgtatgaacgttcacatgagatggttttgcgtacattgtggatcattattg  25853600                         <---------ANAC58                         <---------ANAC58                        <---------ZAT2                     <---------MYB52(1)                   --------->MYB59                   --------->MYB111(1)                   --------->MYB52(2)                   --------->MYB46(2)               <<<<<<<<<SARD1                                  -                   --------->MYB111(2)              <<<<<<<<<CBP60g                               <-- -ICU4           <---------MYB52(1)        ---------->DOF2                                 <---------ANAC46 >ATHB51        ------------>MYB.PH3(2) <----------DOF2                        <-----------HVH21  --- >ATHB12   <---------ANAC55(2)       <---------ARR11(3)                  ----------->RAV1(1) <-------   ggctcgtattaatacataagttagttagcttggcatcaatgtctttaaggcccaaatttcatatatagctaaatgcaacaatgtcaagggatgttgtgtt  25853700               --------->AHL20(2)               <---------AHL20(2)       ------->GAMYB      --------->MYB46(3)     <---------At5g28300    <-----------GT1                                                         --------->AHL20(2)    --------->MYB52(1)              <---------ATHB51                        <---------AHL20(2)    <---------DOF5.7(2)             <---------YAB1                         <---------AHL20(1)  --------->DOF5.7(2)             --------->YAB1                           --------->AHL20(2) <----------DOF2   <---------AHL20(1)            ---------->DOF2           <---------AHL20(2) ----->ZmHOX2a(2)  --------->AHL20(1)       --------------->AGL15   --------->TOE2(3)             --- -------ARR11(3)   <---------AHL20(2)--------->YAB1                 --------->TOE1(3)             --- ------>ARR11(3)   --------->AHL20(2)<--------ATHB1      --------->YAB1    --------->AHL20(1)     <-- --ANAC46  ----------->GT1     --------->YAB1----------->GT1     <-----------GT1           <---------   gatctttaacggcccgtttaattaattgtagaataacaataatagaccagtaaaagaaaacataattttaccctaaatttaattttctaaaccctttctt  25853800                ----------->GT1               <---------TOE2(3)             ---------->DOF2        --------->At5g28300        --------->LBD16       --------->RAP2.6(2)    ------->GAMYB   --------->MYB46(3)  ---------->DOF2           --------->WOX13(1) --------->MYB52(1)        <---------AHL20(2) ------>HSFB2a(2)          --------->AHL20(2)     ------>MYB83 ------>TOE2(3)--------->DAG2                     ------>MYB46(1) -------HSFB2a(2)----------->GT1        --------->LBD16 -DOF2 ----------->GT1    --------->AHL20(2)    <---------MYB59                   ------------>CBF  -   ccataacagccgtaaaaaaggttaaaaaataaatcaaaaacccagaaaaaccaaactctctcatcgtctcaaatggctatggctctcaatctctgaattt  25853900                                  --------->ICU4                                --------->YAB1                                <--------ATHB1                            --------->AHL20(2)                               <---------ATHB12                           <---------AHL20(2)                               <---------ATHB51                           --------->AHL20(1)                           ------------>CBF                              --------->AHL20(2)                     --------->YAB1<---------ICU4               <---------TOE1(2)    <-----------GT1                ------------>CBF<---------ICU4              <-----------GT1    ----------->GT1          <----------DOF2--------->GLK1(1)           <---------YAB1      <---------AHL20(2)  ------>ZmHOX2a(1) <---------ATHB12                 *TSS  <-----------GT1<---------AHL20(1)     ---- ----->ZmHOX2a(2) --------->WOX13(1)                <-----------GT1   --------->WOX13(1)      <------   gatcctctgtctctttctctcaatcagatttcaataattcttacaagttcaaattttcatttttcccagtttcaattaaatttgtataaacaattcccac  25854000                                                              --------->ZAT18                                                              <---------ZAT14                                                       --------->ZAT6                                                     ----------->RAV1(1)   ------>NtERF2                                                     ------>NtERF2         --------->LBD16                                                    <---------ETT(1)      --------->DEAR3(1)                        --------->ARR11(3)          --------->ANAC46      --------->ANAC46         <-    --------->ANAC46    <-----------ARR10           ----------->HVH21    <---------LBD16--------->ANAC46    --------->ANAC58    <---------ARR11(3)    <---------ARR14(2) --------->ANAC58       --------->ANAC58    --------->ANAC58    --------->ARR14(2)    <---------GLK1(2)<---------ALFIN1         --------->ANAC58 <---------REM1(2)     --------->RVE1(1)      --------->ARR14(2) --------->ANAC58     <---------ALFIN1 ----->AtMYB61         --------->CCA1(1)   <---------ATHB12   --------->ZAT14         --------->AtMYB61 ---ALFIN1       ----------->GT1      >>>>>>>>>>>>>>>>>LFY    <---------ZAT18       ------>ZmHOX2a(1)   ctatacacacaaacatatacagaaaatatcttctctctccctccaatggattctccgacactaccgcactctatctccgcctcttcctccaccccattcg  25854100        --------->At5g28300        --------->LBD16       --------->RAP2.6(2)       <---------ANAC46       ----------->GT1       --------->RAP2.3(2)      <------NtERF2      --------->RAP2.3(1)     ------>NtERF2     <---------ATERF1(1)     --------->ABI4(1)    --------->DREB2C(2)    --------->DEAR3(1)    --------->ATERF1(2)    --------->RRTF1(3)    --------->RAP2.6(2)    --------->RAP2.3(2)    --------->RRTF1(2)    --------->RAP2.3(3)    <---------DEAR3(1)                 --------->LBD16   --------->ERF1                     --------->ANAC55(2)   --------->RRTF1(1)                 --------->ANAC46            --------->bZIP60(2)   --------->ATERF1(1)                <---------ANAC55(2)        ------>NtERF2   --------->ORA47(2)                 --------->LBD16            <------NtERF2   --------->RAP2.6(1)               <---------------AGL15       --------->LBD16   --------->DEAR4(2)                --------------->AGL15       <---------ATERF1(1)       <---------   --------->RAP2.3(1)               <---------LBD16   <---------ICU4                      --------->ARR11(3)  ------>NtERF2--------->AtMYB61    <-----------------AGL2      --------->DEAR3(1)         <---------ARR11(3)  --------->LBD16                   ----------------->AGL1     <---------LBD16     <---------ALFIN1  --------->At4g35610            <----------DOF2       --------->YAB1        <-----------GT1  <---------RAP2.3(1)      <-----------GT1         ------>ZmHOX2a(1) <---------ANAC46  ------>ZmHOX2a(1)  <---------At4g35610   <---------KAN4(2)         --------->TOE2(3)<-----------HVH21------>ZmHOX2a(1)  <---------ATERF1(1)--------->LBD16----------------->AGL2   --------->DEAR3(1)  ------>ZmHOX2a(1) --------->ANAC46  <---------LBD16  <-----------------AGL1<---------ICU4  --------->ARR14(2)       -- --------ATERF1(1)--------->MYB52(1)<-----------------AG <---------YAB1------>ZmHOX2a(1)  <---------CCA1(2)   cttccgccgccgtaaaacctcaccggaataaactcctttcccgtaatggcatcctcatcatcatcgccgcgtcctgtattctcctcctcctcatatctct  25854200                                                                  ----------->HVH21                                                               --------->TOE2(2)                                                               ------->GAMYB          --------->ARR14(2)                                     --------->YAB1            --------->TOE1(2)      <---------ARR14(2)                                   ----------->RAV1(1)        <---------MYB55(2)     <------NtERF2                                  ------->GAMYB               --------->MYB46(3)   --------->RAP2.6(2)                                  --------->AtMYB61          ------>MYB83          --------->RAP2.3(2)                                 <---------MYB55(2)          -------->P            --------->LBD16                                 --------->MYB46(3)          ------>MYB46(1)      <---------LBD16                                -------->P                  <---------ALFIN1     ------>NtERF2                                --------->ANAC58           <---------ALFIN1      --------->LBD16                     <---------ARR14(2)               ------>MYB46(1)           --------->DEAR3(1)            --------->DEAR3(1)  --------->ANAC58      ------>MYB83--------->DEAR3(1)--------->LBD16           <------NtERF2     --------->LBD16        <---------MYB52(2)        ------>ZmHOX2a(1)          ------>NtERF2     --------->LBD16         --------->MYB46(3)   --------->YAB1         <---------ALFIN1   --------->ANAC58        <---------MYB46(2)  <------ZmHOX2a(2)       ------>NtERF2 --------->ARR14(2)             --------->AtMYB61   =============HOX2a_HOX2a=====      --------->ANAC58      --------->ANAC46        <---------MYB111(2) =============================      --------->ANAC46      --------->ANAC58        <---------MYB55(2)  =============================      --------->ANAC58   ------>ZmHOX2a(1)          <---------MYB111(1)<---------ARR11(3)       ===== --ARR10 --------->DEAR3(1)<---------LBD16         --------->ANAC58    --------->ARR11(3)<---------ALFIN1 ---->ZmHOX2a(1)     <---------ARR11(3)            --------->ANAC58------>NtERF2--------->ANAC46-----   cctcatctacgccaccgtctcaaaatcctcccgcaaccaccataatccatcgcaccaaaccccaacctccgacgatcatcctccgccggaaacacctcct  25854300                    <-------TEIL                  <---------GLK1(2)                  <---------ARR14(2)                  --------->AGP1                  --------->ARR14(2)          <---------ATHB12         --------->ANAC46         ------>MYB83 <-----------HVH21         ------>MYB46(1)           --------->ANAC58           --------->WRKY38(1)       --------->AtMYB61      --------->ANAC46              <-------GAMYB       --------->MYB46(3)     --------->ANAC58             <---------ANAC58                       <--       <---------MYB55(2)     --------->ANAC58             <---------ANAC58                      ----  ========================HOX2a_HOX2a                      <---------ANAC46                      <---  =========================HOX2a_HOX2a                <---------ICU4                         <-------  ------>ZmHOX2a(1)<------ZmHOX2a(2)                  --------->ATHB12              <---------WRKY12- --------->ANAC46<---------At4g35610                 <---------YAB1                 <---------WRKY38(1) =========================HOX2a_HOX2a                <------ZmHOX2a(2)             --------->WRKY18(1) ========HOX2a_HOX2a------>ZmHOX2a(2)           <---------LBD16 <---------ANAC58  <--------ZAP1------ ==HOX2a_HOX2a   --------->At4g35610------->GAMYB   --------->ARR11(3)            <-----------HVH21-- ==========================HOX2a_HOX2a       <---------ARR14(2) <---------ANAC58 --------->LBD16 <--- ->ZmHOX2a(1)   ----------->ARR10  --------->ANAC58 <---------ARR11(3)         <---------LBD16-------   tctcctccaccaatcgctcagatccgtctcgcatgcaacgcaacgcgtttcccagatcattgcgttgcctcgctctctaaacccggtcaagtccctccgg  25854400       ----------->GT1 ------>ZmHOX2a(1) ----ZmHOX2a(2) ----->ARR14(2)                                        --------->ARR14(2)                         --- ------ARR11(3)                                        <---------ARR14(2)                       <---- --LBD16                                        --------->GLK1(2)      --------->GLK1(2)       ------ -------->TOE2(3)                              <---------GLK1(2)      --------->GLK1(1)     ------>ZmHOX2a(1) --->LBD16                                  --------->HSFB2a(2)  <---------ATHB12   ------>ZmHOX2a(1) ---->ZmHOX2a(2)                         ------>ZmHOX2a(1)  ------>NtERF2      --------->WOX13(1) --- ------ARR14(2)                         --------->TOE1(2)  --------->LBD16   <---------ATHB12 ------- -->HSFB2a(2)      <---------ZAT18      --------->TOE2(2)<---------LBD16   --------->WOX13(1)<-------   atcctaaaccggttcaaataatccactctgcaatttcagtctcctacgagaatctcaaatccggccaatcgaaaatccaatcaatcctagactcctccgc  25854500  Previous    Next  AGI:  At5g64630.1    Description:  FAS2 (FASCIATA 2); nucleotide binding. similar to HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA), nucleotide binding / protein binding [Arabidopsis thaliana] (TAIR:AT3G44530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46438.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit (InterPro:IPR001632); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 25850400    to: 25853610    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g64640.1    Description:  pectinesterase family protein. similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G09760.1); similar to pectin methylesterase 2 [Pyrus communis] (GB:BAF42039.1); similar to 52O08_4 [Brassica rapa subsp. pekinensis] (GB:AAZ67549.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46441.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectinesterase, catalytic; (InterPro:IPR000070); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) Range:  from: 25853953    to: 25856425    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version