Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <---------TOE2(3)                       <<<<<<<<<<GT-3b                                       <----------DOF2                   --------->AHL20(2)                                        --------->TOE1(3)                   <---------AHL20(2)    <---------ARR11(3)                  --------->TOE2(3)                --------->TOE2(3)        --------->ARR11(3)             <---------AHL20(2) ---ZmHOX2a(1)<---------TOE2(3)         --------->RVE1(1)              --------->YAB1               - ----TOE2(3) <-----------GT1            --------->CCA1(1)          <---------YAB1<---------TOE1(3) -- -DOF2      <-----------GT1<----------DOF2                       <-----------GT1---------->DOF2    <-   gattatacaaatttttaacatttatttttcttttattcaaaaatatctccaaacttatagttttatattactattaaaactttaaagttttttttggaca  25804900                                                                                                   <-                   <---------ANAC46                                 <-------TEIL             <-------           <---------AHL20(2)                                  <---------HSFB2a(2)           <-------          <---------AHL20(2)                                   >>>>>>>ZML2                   --------          --------->AHL20(2)                  <xxxxxxxxxxxxxxxxsmallRNA(s)                 <---------TOE2(3)   <---------AHL20(2)                        <---------ALFIN1  --------->HSFB2a(2)   --------->AHL20(2) ---------->GT1  <------MYB46(1)         --------->ANAC58 --------->ALFIN1           <---------AHL20(2) --------->GT1   <------MYB83            --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <-- --------ZAT6    <---------ANAC46  <-------TEIL    <xxxxxxxxxxxxxxxxsmallRNA(s)     --------->AHL20(2)   agtgttaaatttttaaatttggtgtaaactaattggatacatcacccaaacccctaagaggtgttctagattcaatatggtttacatttaatttagattt  25805000                                                              <---------TOE1(3)                                                            ---------->DOF2                                                          <---------YAB1                   <---------AHL20(2)                     --------->AHL20(2)                 --------------->AGL15             <---------AHL20(2) --------->ZAT6      <---------AHL20(2)                 <---------------AGL15             --------->AHL20(2) ----------GT1      --------->AHL20(2)                 <-----------------AGL2      <---------AHL20(2) --ARR11(3)        <---------YAB1                      <-----------------AGL3   ----------->GT1 --GLK1(2)      <---------AHL20(2)                     <---------YAB1          ----------->GT1 ->ARR11(3)     --------->AHL20(2)         <---------AHL20(2) <---------TOE2(3)<---------ZAT6 ---------GT1 <----------DOF2     <-----------GT1    <-----------GT1         --------->ANAC55(2)   ttaacacttgttttttcttttattaaaaaatgtttttaaacttatattttttgtattactattaaaggtttttttggataagtgttaaatttttaaattt  25805100                                         --------->ARR11(3)                                         <---------AHL20(1)                ----------->GT1      <---------AHL20(2)       --------->AHL20(1)           --------->AHL20(2)       <---------AHL20(2)      ----------->RAV1(1)       --------->AHL20(2)      <---------ALFIN1        <---------MYB59  --------->AHL20(2)       --------->ANAC58     <------------CBF         ---------->DOF2  <---------AHL20(2)       --------->ANAC58 <-----------GT1  --------->YAB1                     -----   ttgtttaaataaaatgaagggaaatttgcaagcccacatttaatatatactattgggcctaaattataacttagttaaggcccattagtaaggcattcct  25805200                                                    --------->ANAC46                                                    <---------O2                     <---------ANAC58                                                    --------->TGA1a               ----------->HVH21                                          ------>NtERF2                         --------->ANAC55(2)                                         --------->DEAR3(1)                     <---------ANAC58                                        <------NtERF2<-----------HVH21          <---------ANAC58                             <---------LBD16        <---------TGA1a           <---------ANAC58     --                             --------->LBD16        --------->O2              <---------ANAC46   <---                  <-----------GT1     <---------DEAR3(1)     ----------->GT1  <---------ANAC58   ----             <---------AHL20(2)--------->LBD16  <-----------HVH21   <---------LBD16--------->REM1(2)            --------->AHL20(2)--------->LBD16  <----------DOF2 ----------->HVH21<---------ANAC55(2)-- ->ZmHOX2a(1)--------->AHL20(2)------>NtERF2   ===============bZIP_DOF--------->LBD16<---------ANAC58   cttgtaagcccatatttaattcaccattatccccggctagtcgccgagactttcacgtcggaagagtgacaccggggctagcgcgtgacgagcgatggga  25805300                                  <---------DEAR3(1)                                               <-                               ----------->HVH21                                               <-----                             <---------O2                                                      ------                             --------->O2                                                    --------                          --------->ARR14(2)                                                 ========                          <---------ARR14(2)                                                 --------                         <------NtERF2                                                       --------                        --------->LBD16                                        ------>ZmHOX2a(1) <---                      <---------HSFB2a(2)                                <---------ANAC58  <---------ALFIN1       <---------ANAC46<---------ANAC46                                  <---------ANAC58--------->LBD16 --------->HVH21      <---------LBD16                                   --------->SPL7   ------>NtERF2 ------At4g35610  --------->ARR14(2)         <-----------ARR10       <---------ANAC58   --------->ANAC46 ----->At4g35610  <---------ARR14(2)     <---------At4g35610         <---------ANAC58  <---------LBD16 --------->TGA1   <---------GLK1(2) <------NtERF2  <---------YAB1 <------ZmHOX2a(1) --------->KAN4(2)   gatgacgaagcgcgtagttggattcgcggagacgagacggcgaagcagatgttatcaagggttcttaaggaccgtgcgttcctgcttattccgccacttc  25805400                                                 <-----------HVH21                  <------NtERF2                  <-----------TGA1                 --------->LBD16                --------->ANAC46                 ------>NtERF2                  --------->bZIP60(2)                 --------->HSFB2a(2)       ------->TEIL               <------NtERF2               <-----------ARR10              ------>NtERF2              --------->ABI4(2)       <----------DOF2                   ------>NtERF2    ------->TEIL<---------ANAC46       --------->RAP2.3(1)                    --------->TOE1(2)   <---------CCA1(2)                  --------->LBD16            <---------ARR14(2) --------ANAC46<---------LBD16        <---------ATERF1(1)        --------->ARR14(2) ================= ----ZAT14 <---------ANAC58          <---------DEAR3(1)  --------->ARR14(2)  --------->ZAT2 --->ZAT14 <---------ANAC58          --------->DEAR3(1)  <---------ARR14(2)  <---------At4g35610 ->O2 --------->TOE2(3)             <---------LBD16  <------NtERF2   <---------YAB1 <------ZmHOX2a(2) =================bZIP_DOF         --------->MYB52(1)--------->At4g35610     --------->At4g35610    - ->bZIP60(2) --------->ANAC46    <------ZmHOX2a(2)   <---------At4g35610     <---------ZAT2        -- ->TGA1a   --------->ANAC46     --------->ARR11(3) <---------WRKY12  ======================HOX2a_HOX2a ------At5g28300<---------LBD16 <---------ARR11(3)--------->TGA2(2)  ------>ZmHOX2a(1) --------->At4g35610   accgtgtacctttacgcgccgggaacgtagtcgagatcaccggcgcatctacgtcagcgaaaactcaaatcctgattcaagctgcgatcagttgcattct  25805500            --------->ANAC58            --------->ANAC58           --------->SPL7          <---------ARR14(2)          --------->ARR14(2)         <---------SPL7                                               <----------DOF2       --------->ALFIN1                                           ---------->ID1      ------->MYC3                                   --------->HSFB2a(2)                 --------->TOE2(3)      <-------MYC3                                   --------------->AGL15           <---------MYB52(1) ======HOX2a_HOX2a                                  <-----------------AG            <---------MYB52(1) ----->ZmHOX2a(1)                                   <-----------------AGL2         --------->LBD16 ------->TOE2(3)             <------ZmHOX2a(1)      <-----------------AGL1       <---------LBD16   tcctaaaacgtggaacggcattcactatggaggattagggaaactggttttgtttctcgatttggattgtcgctttgatgttctccggttatctcaaatg  25805600                            --------->ANAC58                    <----------DOF2                            --------->ANAC58                   <---------ANAC58                       --------->ZAT6                          <---------ANAC58   --------->YAB1    --------->MYB52(1)     <-----------GT1<---------ANAC58                    <----- --------->ANAC58--------->ANAC58          <-----------GT1 <---------ANAC58               <---------AHL20(2) --------->ANAC58--------->ANAC58 <----------DOF2         --------->ZAT2      <---------MYB52(1)   ctcaagcatcgtcttcttcaagctaactgtatgcaacttttgaattttccccttcttcttagcttgctttggattttgcagtcagtttcaaatttatgaa  25805700              --------->YAB1                                    --------->ARR14(2)           --------->WOX13(1)                                   <---------ARR14(2)        --------->TOE2(3)                                    <---------ANAC58      --------->GLK1(2)                           --------->MYB52(2)       <------ZmHOX2a(1) <---------TOE2(3)                   <---------ARR11(3)      <---------ANAC58 ----AHL20(2)<---------ATHB12        --------->ARR11(3)<----------DOF2   --------->MYB59   <------NtERF2   attgagataatctcaatcatacataggcttcgatattgagatgttcaaatgttagttcttttagcgtatcagggttaggaaatggagcatggtggcaact  25805800  Previous    Next  AGI:  At5g64520.1    Description:  XRCC2 (Arabidopsis thaliana homolog of XRCC2). Identical to DNA-repair protein XRCC2 homolog (XRCC2) [Arabidopsis Thaliana] (GB:Q682D3;GB:Q8GVF2;GB:Q9FLG6); similar to unnamed protein product [Vitis vinifera] (GB:CAO71617.1); contains domain no description (G3DSA:3.40.50.300); contains domain X-RAY REPAIR CROSS COMPLEMENTING PROTEIN 2, XRCC2 (PTHR22942:SF5); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540); contains domain RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER (PTHR22942) Range:  from: 25805295    to: 25807430    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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