Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------->YAB1                                                                            <--------HAHB4                                                                            <---------ICU4                                                                     ----------->RAV1(2)           <---------------AGL15                                    -------->P           --------------->AGL15                                    ------>MYB83<---------ARR11(3)          ----------------->AGL3                                    --------->MYB52(1)        --------->ARR14(2)                                          ------>MYB46(1)        ------->TEIL                                               --------->MYB55(1)        --------->GLK1(2)                                         <---------MYB111(2)        <---------ARR14(2)                                <---------ICU4   <------ZmHOX2a(2)     --------->ANAC58                                   <---------ARR11(3)<---------ARR11(3)       --     --------->ANAC46                            <----------ID1   <---------MYB46(2)     --------->ANAC58     --------->ANAC58  --------->ANAC58          --------->ANAC58 <---------MYB59        --------->ANAC58 ----->AHL20(2)        --------->ANAC58          --------->ANAC58 <---------MYB111(1)  ---------->DOF2 ---->AHL20(2)     <---------At4g35610      ---------->DOF2    <-----------GT1 <---------ICU4      --   aaaaaacacgaatccatattaagctacgctctgagaatgaaacccataaagaagccaaaatcattttacctacctggatcattatctccaaaagcaccat  25801200                                                                                           <---------YAB1                                                                                          --------->AHL20(1)                                                                                          --------->AHL20(2)                                                                                        <---------ARR11(3)                                                             --------------->AtSPL3     --------->ARR11(3)                                                             --------------->AtSPL8     <---------AHL20(1)                         *TSS                                --------->ZAT6             --------->ICU4              ------>ZmHOX2a(2)                            <-----------GT1           --------->AHL20(2) --------->TOE1(3)  <---------TOE1(2)                   <---------REM1(1)          --------->ANAC58 --------->TOE2(3)  <---------TOE2(2)                <-----------RAV1(1)           ----------->GT1 ----->TEIL --------->ARR11(3)                  <---------At4g35610                --------->ANAC58 ------>P   <---------ARR11(3)  ------------>CBF<---------ZAT2         <-----------GT1  --------->AHL20(1)   caaccttagagtttgatcttcccatgtttgtggaaacaatccatagttccagcttatgttgtaactgtacatataaccaaaaaacaagaaaatattatag  25801300                                                               <-----------HVH21                                                              --------->O2                                                              <---------O2                                                              <---------bZIP60(1)                                                              --------->TGA1a                                                              --------->ANAC55(1)                                                              --------->ANAC58                                                              --------->bZIP60(1)                                                              --------->ANAC58                                                              --------->bZIP60(2)                                                              --------->ANAC55(2)                                                              <---------ANAC55(2)                                                       =================MYC_MYB                                                       <-------GAMYB                                            xxxxxxxxxxxxxxx>smallRNA(si3)                                          <---------ANAC46    <---------TGA1a                                          <---------ANAC58    --------->ANAC46                                          <---------ANAC58   <-----------STF1                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                         xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                         xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                         *TSS         <------MYB46(1)                                         xxxxxxxxxxxxxxxxx>smallRNA(le3)                                         xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                         xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      -                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       <-                                         xxxxxxxxxxxxxxx>smallRNA(si3)                            xxx                                         xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxx                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     <--                                         xxxxxxxxxxxxxxxxx>smallRNA(se3)                         xxxx                                         xxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxx                                         xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       xxxx                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxx                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxx                                         xxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxx                                         xxxxxxxxxxxxxxxx>smallRNA(se3)                       xxxxxxx                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxx                                         xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                xxxxxxxxxxx                                         xxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------LBD16                                         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------GLK1(1)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ARR11(3)                                         xxxxxxxxxxxxxxx>smallRNA(se3)             --------->ARR14(3)                                         xxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------ARR11(3)                               --------->AtLEC2       <---------MYB46(3)          xxxxxxxxxxxxxxx>smallRNA(le3)                               --------->ANAC58  ----------------------->TaNAC69(2)<---------ARR14(3)                               --------->ANAC58<---------ANAC46<-----------TGA1   xxxxxxxxxxxxxxxxxxx                       <---------TOE2(3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxx>smallRNA(le3)          ----------->GT1      --------->ANAC46<---------REM1(1)              xxxxxxxxxxxxxxxx>smallRNA(fl3) ------------>CBF<---------AHL20(2) <---------TOE2(3) <------MYB83          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ctactcaataacatgttatatttttgatgttacatgcaaaggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaa  25801400                                                                                                  ---                                                                                                 <---      --------->ANAC58                                                                           <---      --------->ANAC58                                                                          -----    <---------ATERF1(1)                                                                         ----- ------>NtERF2                                                                                  ----- -------->LBD16                                                                                 ----- --------LBD16                                                                                  ----- xxxxxxxxxxxxx>smallRNA(si3)                                                                    <---- xxxxxxxxxxxxx>smallRNA(s)                                                                      ----- -------LBD16                                                                                   ----- xxxxxxxxxxxxx>smallRNA(si3)                                                                    <---- xxxxxxxxxxxx>smallRNA(i)                <-----------GT1                                        ----- xxxxxxxxxxxx>smallRNA(s)             <---------ICU4                                            <---- xxxxxxxxxxx>smallRNA(s)        --------->ANAC46           <---------ANAC46                     ----- xxxxxxxxxx>smallRNA(s)         --------->ANAC55(2)     <---------bZIP60(1)                     <---- xxxxxxxxx>smallRNA(s)         <---------TOE2(3)        <---------O2                           <----- xxxxxxxxx>smallRNA(i)         <---------TOE1(3)        --------->O2               ----------->HVH21 xxxxxx>smallRNA(s)           <-----------GT1           --------->bZIP60(1)      --------->ANAC55(2) xxxxx>smallRNA(s)          <---------AHL20(2) --------->At4g35610         <---------MYB52(1) <------ xxxx>smallRNA(le3)  <----------DOF2 --------->ICU4  --------->ANAC46 <-----------GT1      --------->ANAC46   cccgggcgaagccattgtcaatacttttattttaacgtaatttttacttagcttcacgacgtcgtttacataaaaccgttttcatgtgactcaacaccac  25801500 <---------ALFIN1 -------->HVH21 --------TGA1 --------HVH21                                                      <---------CCA1(2) ---->ANAC46                                                      <---------ICU4 ---->ANAC55(1)                                               --------->TGA2(2) ---->ANAC58                                                 <-----------TGA1 ---->ANAC58           --------->REM1(1)                    --------->ANAC58 ---->bZIP60(1)        --------->TGA1a                      --------->ANAC46           --------->LBD16 -----ANAC55(2)        --------->bZIP60(2)                  --------->bZIP60(2)        ------>NtERF2 ---->ANAC55(2)        --------->O2                         ========================================= ---->TGA1a          <---------ALFIN1                       --------->O2              --------->ANAC46 -----TGA1a          ----------->RAV1(1)                    --------->ANAC58          --------->ANAC58 ---->O2            <------NtERF2                           --------->TGA1a           --------->ANAC58 -----O2           ------>NtERF2                            <---------O2             <---------LBD16 ---->bZIP60(2)   --------->ANAC46                         <-----------STF1    --------->REM1(2) -----bZIP60(1)   --------->ANAC58                       <---------REM1(2)   --------->LBD16    ----- ------STF1       --------->ANAC58        <------------CBF<---------ALFIN1  <---------ANAC46 -------- ---ALFIN1 --------->KAN4(2)            <---------YAB1 --------->ANAC46     --------->LBD16  <-------   gtcacacatcgtttattctcgcgccacatcagtctctacattcttattggctaatactctccacgtcatcatctcttcccgtgaaaacccgccatttaaa  25801600         --------->HSFB2a(1)                                                                       <-         --------->HSFC1(2)                                                                  <-------         --------->MYB46(3)                                                                 ---------         <---------HSFB2a(1)                                                 ------>ZmHOX2a(1)-------         <---------HSFC1(2)                                        <---------ARR14(2)       ---------    <---------HSFB2a(2)       *TSS                                 --------->ARR14(2)      --------->WOX13(1)    --------->HSFB2a(2)       <---------ANAC46                 <-----------------AGL2    --------->LBD16 ======bZIP_DOF  <---------ALFIN1                              ----------------->AGL3    <---------ZAT18 ----->DOF2   --------->ANAC46<---------ANAC58  ----------->GT1=====================HOX2a_HOX2a    -- ->AHL20(2) ------>MYB83<---------YAB1    ----------->RAV1(1)  <-----------------AGL3   --------->ANAC46 --AHL20(2) ------>MYB46(1)   <---------ANAC58---------->DOF2  ------>ZmHOX2a(2)       <---------LBD16   aagactccagaaccatccacaaccttcttattccgtcttaacaacaacaaaagaaaaaacactgatccaaatttgggtccttctaattttgcgcaatcaa  25801700                                 --------->YAB1              --------->AHL20(2)                                <---------YAB1               <---------AHL20(2)     ---------->DOF2        <----------DOF2               --------->AHL20(1) --------->TOE1(3)       <---------MYB52(1)               <---------AHL20(1) --------->TOE2(3)     --------->MYB52(2)       <---------ZAT2 --------ARR11(3)      <---------MYB46(3)       --------->ZAT2 --ATHB12             <---------TOE1(2)         <---------At4g35610 >ANAC58             <---------MYB52(1)         --------->At4g35610 -->AHL20(2)       <---------ANAC58--------->ICU4         <---------ARR11(3)     <----------DOF2 >ANAC58  --------->TOE2(3)--------->MYB52(2)  <---------TOE1(2)               --------------->AGL15 ------->ARR11(3)  <---------ANAC58<---------YAB1 <----------DOF2      <---------TOE1(2)        <XXXX   ataccttcaaagcctcaaatttcgttcgttctttgtgataattctctcgcagctttgcaatatataaatctcgagggtttactcttttaaggcctggttt  25801800                   ----------->HVH21                  <-----------HVH21      --------->WOX13(1)                    <---------GLK1(1)                                   <----     <---------WRKY38(1)                    <---------At4g35610 <-----------GT1                 <----    --------->WRKY18(1)              <-----------RAV1(1)   <---------AHL20(2)             <---------AHL20(2) XXXXXXXXXXXXXXXXMIR3440B-3P        <---------TOE2(3) <---------YAB1    <-----------GT1 <----------DOF2   tttttggtcaatccaagatgggtcacagagtattggtttatgttggagctctgtttctgattttattcacgatttttccatcttctagtgctttaatttc  25801900                                                <---------At5g28300                         ---------->DOF2       <-----------GT1           <---------ANAC58   ------>ZmHOX2a(1)  --------->TOE1(3) --------->ANAC58           <---------YAB1      --------->YAB1 <---------At4g35610  --------->TOE2(3) --------->ANAC58     <---------AHL20(2)   --------->ARR11(3) ----------->RAV1(2)-------->P       --------->LBD16         <---------YAB1       <---------ARR11(3) -----ANAC58      ------>ZmHOX2a(1) --------->ANAC46       --------->YAB1<---------ANAC58 -----ANAC58   ------>ZmHOX2a(1)   <---------LBD16    <----------DOF2    <---------ANAC46    --------   gtctcctgatgctaatcctccttaccctaaagctatctccgtaagaaatttaccatcttttttataattgtcattgcgtttatagatattgataagaaag  25802000                                   <---------DAG2                                     --------->YAB1                              --------->GLK1(2)                           <---------------AGL15                             <---------GLK1(2)                            --------------->AGL15                         ---------->DOF2                                 <-----------------AGL3                       --------->YAB1                                    <---------ANAC58         <--  <---------YAB1  --------->AHL20(2)                                     <---------ANAC58    <-------  --------->ICU4  <---------AHL20(2)                                 <----------DOF2 <---------YAB1 -->DOF2     <---------AHL20(2)    <----------DOF2             <---------YAB1<---------YAB1  <-------   tgtcattatcggtcttaaattttaatcaaaagaatctctttttgaaactcgtagaatatgaaattttgattctttgcttaatatagtatcataagctttt  25802100  Previous    Next  AGI:  At5g64501.1    Description:  unknown pseudogene Range:  from: 25801028    to: 25801225    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g64505.1    Description:  pre-tRNA. tRNA-Val (anticodon: AAC) Range:  from: 25801341    to: 25801414    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g64510.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO49799.1) Range:  from: 25801630    to: 25803533    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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