Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <------MYB46(1)                                                                                      <------MYB83                                                                                     --------->MYB59                                                                                     --------->MYB111(1)                                                                                     --------->MYB111(2)                                                                           <---------ARR14(2)                                                                           --------->ARR14(2)                               <------NtERF2                              <------ZmHOX2a(1)                               <---------ANAC46                   <---------------AGL15                             <---------ANAC46                    ==============================MADS_MADS                           <-----------HVH21                     --------------->AGL15<---------ANAC46                  --------->ZAT14                             <---------GLK1(1)      --------->MYB46(2)                  <---------ZAT14                             --------->GLK1(1)     <---------MYB55(1)              --------->ANAC46--------->At4g35610            <---------ARR14(2)    <---------MYB52(1)              --------->ANAC58<------NtERF2                  --------->ARR14(2)<---------ANAC46   --------->ANAC46      --------->LBD16                    <---------HSFB2a(1)====================== ---------->DOF2  <-------TEIL<---------LBD16               --------->HSFB2a(1)<---------ANAC58 <---------DOF5.7(2)   <---------LBD16       <---------DAG2 --------->At4g35610<---------ANAC58 ------->DOF5.7(2)--------->SPL7--------->LBD16             <---------At4g35610--------------->AGL15 --------DOF2 --------->ANAC58<---------At4g35610           <----------TaMYB80----------------->AGL1 ->TEIL       --------->ANAC55(1)------>NtERF2<----------DOF2<---------GLK1(2)<-----------------AGL1   ctttaacgcgatgaacacggtacagtccgggtcgcggacattaatcgccttttctactaggcagattcccctaagaggattccttgttaggtagagagca  25797100                                                                          --------------->AGL15                    --------->ARR11(3)                               <---------ANAC58         --------->TOE1(2)      <----------DOF2                      <---------ANAC58       --------->GLK1(2)    <-------TEIL                            --------------->AtSPL3       --------->ARR14(2)  --------->CCA1(2)                     --------->ATHB12       <---------ARR14(2) --------->ARR14(2)             --------->DAG2 --------->SPL7      <---------ARR14(2)  <---------ARR14(2)    <---------AHL20(2)  --------------->AtSPL8      <---------GLK1(2)  <------ZmHOX2a(1)    <----------DOF2   <---------YAB1 =========================================================================================MADS_MADS<-   ttgtttccgattctgcgaagaatatcaggatacacttttgaatttgctcttttattgaaaaggtttatgattcgtaccacgatgagaaaactgaatgtct  25797200                   ------>MYB83                   -------->P                   ------>MYB46(1)                 --------->AtMYB61                --------->MYB46(3)                                                         <---------HSFB2a(1)          <---------HSFB2a(2)                               <---------ARR14(2)             --------->HSFC1(2)          --------->HSFB2a(2)                               --------->ARR14(2)             --------->HSFB2a(1)         <---------LBD16                                  --------->LBD16        --------->ZAT6         ------>ZmHOX2a(2)                              <---------LBD16         <---------ZAT14        <------ZmHOX2a(2)                               <---------------------WRI1         <---------HSFC1(2)       <---------ARR14(2)                             <-----------GT1           --------->ZAT14       --------->ARR14(2)                          <---------GLK1(1)      <---------RAP2.6(3)   <----       --------->ARR11(3)--------->YAB1       <---------ARR11(1)          <---------SPL7<------ZmHOX2a(1) ------GAMYB    <---------MYB52(2)            --------->ARR14(2)   ------>ZmHOX2a(1)  <---------TOE2(3)   cggttataagatcgggaaaccaacccttgataacttggagaaaaaccgtatcgatttctccggatagtcctaaggccgtctgaacactgaggaagcctct  25797300                                         <---------At4g35610                                         --------->At4g35610                                         --------->ZAT2                                         <---------ZAT2                                      --------->TGA2(2)                                     <-----------HVH21                                     <-----------TGA1                                    --------->bZIP60(1)                                    --------->TGA1a                                    <---------bZIP60(1)                                    <---------O2                                    --------->TGA2(1)                                    --------->O2                                    =========================bZIP_DOF                                    <---------TGA2(1)                                    <---------TGA1a                                  <---------TGA2(2)                                 ----------->HVH21                                 ----------->TGA1                                ------>ZmHOX2a(2)                               <------ZmHOX2a(2)                               <---------At4g35610                               --------->At4g35610                     --------->REM1(1)                              --------->ARR14(2)                   <---------At4g35610                              <---------ARR14(2)                   --------->At4g35610                              <---------ARR11(3)                   --------->LBD16                              --------->ARR11(3)               <---------ARR14(2)                              <-----------ARR10                --------->ARR14(2)                              <---------AGP1                  --------->ZAT2                              --------->GLK1(2)               --------->GLK1(1)                             <------ZmHOX2a(1)                --------->At4g35610                           <---------TOE2(3)                  <---------GLK1(1)                         --------->CCA1(2)        ---------->DOF2 --------->ANAC46                    ---------->DOF2<-----------STF1           <---------ZAT2 -----YAB1          ==========================bZIP_DOF        <---------At4g35610   <---------LBD16   tattgttttgacaaactcaacaaaaagataaggatctgacgtcagcttggaagaaagcttatggagctccgctacatcattcgatactcggagaaattca  25797400                             <---------ANAC58                             <---------ANAC58                             <---------ANAC46                    <---------TGA1a                    <---------ANAC58                    <---------ANAC46                    ===================================bZIP_DOF                    <---------bZIP60(2)                    <---------O2                    --------->O2                    <---------ANAC58                    --------->ALFIN1                   <------NtERF2                   ------>NtERF2       <---------ANAC58                 <---------DEAR3(1)    <---------ANAC46                                    --------->ATHB12                <---------LBD16<---------AtMYB61                                           <---------ICU4           ===================bZIP_DOF <---------ANAC58                                   <---------YAB1           ---------->DOF2   <-----------RAV1(1)                                   ------>ZmHOX2a(1)         --------->ANAC58<---------ANAC46                                       ------>MYB46(1)         --------->ANAC58<---------ANAC58          <---------TOE2(3)            ------>MYB83    <----         --------->AtLEC2<---------ANAC58   ---------->DOF2                   <---------MYB59   <----    --------->REM1(1) <------NtERF2  <---------ANAC46                       ------->TEIL--------->YAB1   gtcgctacagcatgcaagcgcggcgtggcttgtgtggttttgtgtgtaaagtcgaggttaagcatatgttgaattatggaccttcctctagcatcattgc  25797500                                                 ----------->GT1                                               <------------CBF                                 <----                                             <---------AHL20(2)                                ------                                     >>>>>>>>>>GT-3b                                      --------->YAB1                                  --------->ANAC58           ----------->GT1        ------>MYB46(1) -----ANAC58     <------NtERF2    *TSS      --------->AHL20(2)          ----------->GT1--------->YAB1 -----ANAC58  --------->At4g35610 --------->ANAC58          <---------------AtSPL8  ------>MYB83-----   ttagcgagatagaattggctgcaactctaaaattgcaagaaaaatataaaattgaaaaacaaatagtacaaaattagttaaaaaccaaataatcaagagg  25797600                                            <---------ANAC58                                            <---------ANAC58                                          <-----------GT1                                     <---------AHL20(2)        *TSS                  <---------AHL20(2)                                   ------>ZmHOX2a(1)  <----------ID1              --------->AHL20(2)                               <---------ALFIN1 ------ID1                   <---------AHL20(2)--------->ATHB12          <---------ARR14(2) ----->GT1             ------>MYB83 <---------AHL20(2)                   --------->ARR14(2)       --- ------>GT1            ------>MYB46(1)   <<<<<<<<<<GT-3b            <---------ANAC55(2)------>ZmHOX2a(1)   gaaaaaaacaaaacttaagaagaccgacttatttattttttatttttcttgatttcttcaaacgactattacgagaatacccctccttcctcatggaata  25797700          --------->GLK1(1)          <---------GLK1(1)   <---------ARR14(2)   --------->ARR14(2)  <---------HSFC1(2)                 ------->TEIL  <---------HSFB2a(1)      <---------ANAC58              ------>ZmHOX2a(2)                     ------  --------->HSFB2a(1)      <---------ANAC58       --------->DAG2                              <------  --------->HSFC1(2)      --------->ZAT2    <---------ANAC46                                  <------ -------->GT1             <---------ZAT2   <---------LBD16                  --------->ICU4    -------   tcgaaaattcgggtttctcagaaaaccgagcttgccatggatgttgacggagaaggtgatcgtggtcaaaaccctagaattatggagagggactcagatt  25797800        ------>ZmHOX2a(2)       <------ZmHOX2a(2)       --------->ARR14(1)       --------->CCA1(2)      --------->ARR14(2)                                                                            <      --------->ARR11(1)                                                                        <----      <---------ARR14(2)                                                                       ------      --------->ARR11(3)                  ----------->GT1                                     -------      <---------ARR11(3)                ---------->DOF2                                       -------  ---------->DOF2                   --------->LBD16                                         <-------- --->GLK1(2)                       <---------------AGL15                                   <--------- ---GLK1(2)           <---------RAP2.6(3)--------->DAG2                                 <---------ICU4 ---ARR14(2) ------>ZmHOX2a(2)     --------->ANAC46                                    --------->ICU4 -->ARR14(2)<------ZmHOX2a(2)      --------------->AGL15                          --------->At4g35610   ctatcaaagatccgatctcagagccttcatggtttacccccaaaaagtaatttctcttgtttctccattgtatacgtttctctcaggtcaaaattaccgt  25797900                                                                                                 ----                                                                                                ----- ----------DOF2                                                                                 <---- -----MYB52(1)                       <---------ZAT14                                            <---- --->At5g28300                       --------->ZAT14               <----------DOF2              <---- -->TOE2(3)                          --------->ZAT18   ----------->GT1                          ----- -->TOE1(3)                   <----------DOF2         ----------->GT1                     <---------WOX13(1) -At5g28300                 <---------HSFC1(2)      <---------ANAC46             --------->ARR14(2) --GT1                      --------->HSFC1(2)      <---------bZIP60(2)         <---------GLK1(1)<---   aacttttggcaaaattgggcgaaatgtcgaagcttttagttcacagtgtgaatgaagtggaaaaaatttctttattcgcttgaaatctgctaattggttc  25798000  Previous    Next  AGI:  At5g64490.1    Description:  binding. similar to APUM22 (ARABIDOPSIS PUMILIO 22), RNA binding / binding [Arabidopsis thaliana] (TAIR:AT1G01410.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) Range:  from: 25796536    to: 25797534    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g64500.1    Description:  membrane protein-related. similar to transporter-related [Arabidopsis thaliana] (TAIR:AT2G22730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43699.1); contains InterPro domain Major facilitator superfamily MFS-1 (InterPro:IPR011701); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 25797608    to: 25800880    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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