Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                              <------                                                                                          --------->LBD16                                                                                         <---------ANAC55(1)                                                                                         --------->ANAC55(2)                                                                                         <---------ANAC55(2)                <---------ZAT2                                                           <---------ANAC58                <------NtERF2                                                  <---------GLK1(1)   --       <---------ZAT14                                                        <---------ARR11(3)<----       --------->ZAT14                                                        --------->ARR11(3)<----  --------->ZAT14                                                         <------ZmHOX2a(1) ---------  <---------ZAT14                                 <---------AtLEC2    --------->ZAT14    <---------ANAC46 ------>TEIL    <---------At4g35610              <---------REM1(2)    <---------ZAT14    <---------ANAC58 ->AHL20(2)     --------->At4g35610          --------->AGP1           --------->ZAT18 --------->ARR14(2) --AHL20(2)     --------->ZAT2          <-----------HVH21            --------->ALFIN1 <---------ARR14(2)   tgaatgcagtgcatcggcagctatggaagcgagattagcaaatgtcagttctacatggacatgttgtccgagtgcaggaagaactctggttccgtgattg  25767400                                                                                 --------->CCA1(2)                                                                  --------->ARR14(2)                                                           xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                --------->At4g35610         --------->YAB1                                                --------->ZAT2    --------->GLK1(2)<---------YAB1 ----MYB46(3)                                   <---------At4g35610        <---------YAB1 ---WOX13(1)                       ---------->DOF2     --------->ICU4    --------->CCA1(2) ---->NtERF2                    --------->TOE1(3)      <---------YAB1   --------->ARR14(2) --MYB46(1)                     --------->TOE2(3)    --------->YAB1     <---------ARR14(2)    ------- --MYB83            ------>ZmHOX2a(1)      <-----------GT1 <---------At4g35610<---------YAB1--------- >ATHB12<-----------GT1         --------->YAB1  <---------ZAT2    <---------ARR14(2)        <--------   gtgcctagagtttccatttctcctatttgttttatcttaaagaattatccagctgtgatgatgctgagaatttggatatgatgatatgatcaaataacag  25767500              --------->TOE1(3)             ----------->RAV1(2)            --------->GLK1(2)           <---------GLK1(2)           --------->ARR14(2)         --------->LBD16        <---------HSFC1(1)        --------->HSFB2a(2)        --------->HSFC1(1)--------->ATHB12  <---------YAB1       <---------AtLEC2                                                 <---------ATHB12 -->ZAT6<---------HSFB2a(2)                                                             <---------ATHB51 >MYB52(1) <---------ARR14(2)             <---------ANAC46                  <---------DAG2 ---GT1----------------->AGL1          <---------YAB1                       <----------DOF2   tattatgtttccagaacctgaaactgcatggttgaagtcttattatgggtaatcgtttttaagacttgggttctatccctttttaaacaaataatgcaag  25767600                                                                                            <--------                                       <---------ANAC58                                     ---------                                       <---------ANAC58                                     <--------                             <----------DOF2             ----------->RAV1(1)                <--------                             <---------DAG2              ------>NtERF2                   <---------SPL7                 <---------ANAC58     <---------ZAT2 --------->ANAC58                   <---------ANAC58                 <---------ANAC58  <---------MYB52(1)--------->ANAC46           <----------DOF2<-----            <----------DOF2 <---------ANAC58         --------->ANAC58<----------DOF2 <-----------RAV1(1)      ---------->DOF2       <---------ANAC58  ----------->GT1        ------>ZmHOX2a(1)  <---------ANAC58   tttttttgtaaagtcttttgggtatgttttgctttttgttagcttgggatgaaaaacgccaacatatcatccttttacaatgcttttatgtcgtcccgat  25767700   <------ZmHOX2a(2)                                 <---------AHL20(2)--------->AHL20(2)   =============================HOX2a_HOX2a         --------->AHL20(2) <---------AHL20(2) ---------AGL2                                  ----------->GT1      <----------DOF2 -------->AGL3                          --------->ARR14(2)     <---------DOF5.7(2)                 <- ---------AGL3                ------>NtERF2    <------NtERF2  <---------WRKY12                     -- ---------AGL1           ------>ZmHOX2a(1)   <---------ANAC46 <---------WRKY38(1)                  <- ----GLK1(2)        <---------GLK1(1)   --------->MYB52(1)    <---------WRKY45         <---------At5g28300   tttggatcacaagtctgatttgaattcctggctgccattccgaaacggcgtagtttaaattgagtcaacgtctttaattccctcatactcaccgtttcca  25767800                                                                           --------->At4g35610                                                                           <---------ZAT2       <----        ---------->DOF2                                                    --------->ZAT2      <-----      --------->LBD16           --------->YAB1                       <---------ANAC46          ------     <---------HSFB2a(2)     <------------CBF                    <-------GAMYB               <-------     --------->HSFB2a(2)  --------->YAB1  <---------GLK1(2)     <---------MYB46(3)         <---------   ------>ZmHOX2a(1)     <-------TEIL   <---------YAB1         <---------AtMYB61           ---------- --------ARR11(3)<---------ARR14(2)   ------>ZmHOX2a(2)        <---------TOE2(3)   <---------ARR11(3) ------->ARR14(2)--------->ARR14(2) --------->ARR11(3)     <-------GAMYB   <---------At4g35610------- --------ARR14(2)--------->MYB52(1) <---------ARR11(3)    <-----------RAV1(1)    ----------->HVH21  -   aaatcctccagaaagagcgtaactgcattcatattgatgatcttgattctgagtccaacgctgttgtggttgtgtccagctccatgaccttctctattta  25767900                                                                     --------->TOE2(3)                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)                                                             <------------CBF                                                            --------->ATHB12                                                           ------>ZmHOX2a(2)    --------->ARR11(3)                                     ==================HOX2a_HOX2a    <---------ARR11(3)                                     <-------TEIL --------CBF                                              <------ZmHOX2a(2)         <---------MYB46(3) ----AHL20(2)                                             ===================HOX2a_HOX2a       ------ --->ATHB12                                              --------->ARR14(2)        <--------P  <----- ----TBP                                                 <---------ARR14(2)       <---------MYB52(1) ------AGL15                                          =======================HOX2a_HOX2a      <------MYB83 ----->AGL15                                          ------>ZmHOX2a(2)   --------->YAB1      <------MYB46(1) -->AHL20(2)                           ------->GAMYB--------->ARR14(2)   <---------YAB1  --------->HSFB2a(2) --------->DOF2        <---------MYB52(1)           <---------ARR14(2)------>ZmHOX2a(1)  <---------HSFB2a(2)   ttgaaagatgttccttctcaaaaccggttgtatgtattcaacgaaaactatatggatcggatccattggatccttatcaaaaccggttgttttggaaggt  25768000                                        <------MYB83                                        <------MYB46(1)                                        <---------DEAR3(2)                                       --------->MYB46(2)                                       --------------->AtSPL3                               <--------ATHB1                               <---------AHL20(2)                               --------->ATHB51                               --------->AHL20(2)                               <---------ICU4                              <---------ATHB12                              <---------ATHB51                              --------->ICU4                            --------->YAB1                      <---------ANAC55(2)                      --------->ANAC55(2)<---------SPL7                             --------->TOE2(3)           <-----------GT1------------>CBF --------->SPL7                         --------->GLK1(2) --->ARR11(3)     <---------ANAC58     --------->MYB59                            --------->ICU4 <--- ----ARR11(3)     <---------ANAC58     --------------->AtSPL8          <---------AHL20(2)     <------   ctatacaactatttttctgtgcttatgtaacaataatttgttcggtacgattttagatggatttttgtttgatttttttttgaaattcttaattagttac  25768100                                    ------>ZmHOX2a(1)                                    <----------DOF2                                  ------>ZmHOX2a(2)                                 <------ZmHOX2a(2)                                --------->ARR14(2)                                <---------ARR14(2)                                ------->TEIL                         ------------>CBF                   ------->GAMYB                        <<<<<<<<<<<<<<<<<LFY         --------->LBD16                  <------MYB46(1)                        >>>>>>>>>>>>>>>>>LFY       <---------LBD16                    <------MYB83                       --------->ANAC58     --------->AHL20(2)                      <--------P      --------->YAB1   --------->ANAC46 <---------TOE2(3)   --------->YAB1  =========================   <---------CCA1(2)   --------->ANAC58 <---------YAB1 --------->SPL7       ------>ZmHOX2a(1) -------DOF2         <---------ALFIN1   <---------TOE1(3)  --------->MYB46(3)      <-------GAMYB -----GT1  <------------CBF  <---------ATHB12    <-----------GT1   <---------ICU4 <---------MYB46(3)<   tttgtgtatcatacattgttgaaacacaccaatggatcctttaagattatttaaccggacaaccatcaacaattactcctctagcggttggacatttagc  25768200                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                           --------->RAP2.6(2)                                                                           ------->GAMYB --------->REM1(1)                                                                           --------->DEAR3(1)                                                                           --------->ANAC46                                                          <---------HSFB2a(2)     ---------->DOF2                            <---------ALFIN1              --------->HSFB2a(2)   --------->AtLEC2                          ----------->RAV1(1)         <---------ALFIN1    --------->MYB46(3)                          ------>NtERF2 <----------DOF2------>NtERF2    <---------ARR14(2)  --------- <------ZmHOX2a(2)       <---------ALFIN1            --------->MYB46(3) --------->MYB52(1)  --------- =======HOX2a_HOX2a      --------->ANAC46       <---------ALFIN1        --------->ARR14(2) <---------LBD16 ---------ARR11(3)      --------->MYB46(3)    ------>ZmHOX2a(1)    ----------->RAV1(1)   <---------ALFIN1   tagatcacaatgttcacctcttgttccccaccagtccaaactcttttcctccatccccaccgagaagtacaacaaaaccgccatgaaagctacaccggca  25768300  Previous    Next  AGI:  At5g64400.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G09570.1); similar to unknown [Populus trichocarpa] (GB:ABK94558.1); contains InterPro domain CHCH (InterPro:IPR010625) Range:  from: 25766066    to: 25767615    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g64401.1    Description:  unknown protein Range:  from: 25767667    to: 25767828    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g64410.1    Description:  ATOPT4 (oligopeptide transporter 4); oligopeptide transporter. Identical to Oligopeptide transporter 4 (OPT4) [Arabidopsis Thaliana] (GB:Q9FME8;GB:Q8LBQ6); similar to ATOPT2 (oligopeptide transporter 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT1G09930.1); similar to ATOPT7 (oligopeptide transporter 7), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT4G10770.1); similar to ATOPT6 (oligopeptide transporter 6), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT4G27730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67821.1); similar to Peptidase aspartic, active site; Oligopeptide transporter OPT sup Range:  from: 25768071    to: 25772278    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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