Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   -------->ATHB12                                                     --------->CCA1(2) ->CCA1(2)                                                          <---------ARR11(3) ->GLK1(1)                                                   --------->ANAC58 >ARR11(3)                                                 ---------->DOF2 -ARR11(3)                                             ---------->DOF2 -ARR14(2)                                           <------ZmHOX2a(1)    ---------->DOF2 >ARR11(1)                 --------->PCF2           <----------ID1  --------->ARR11(3) >ARR14(2)                 ------->TEIL        ---------->DOF2  ---------->DOF2 ----------->GT1<----- >ARR10          --------->MYB59            --------->TOE2(3)--------->ANAC58 ---------->DOF2  ------   caagattgagaagagaagttagggaaatggacccatataagagaagcctcaaagaggaaaagaaagcaaagataccaaaagaaagttaaatgcaatgtac  25744200                                 --------->AtLEC2                                 --------->ANAC58                                 --------->ANAC58             --------->ICU4                        <    <---------YAB1       --------->MYB52(1)                 --------->YAB1                       ---- --TEIL             --------->YAB1                         <---------YAB1 --------->ANAC58   <------- ->TEIL         <---------AHL20(2)  ---------->DOF2    <----------DOF2    --------->ANAC58---------->ID1   atagagatgattcaacattttatcaaaaaacagacaggcaaagaagaaggaacgaggctttgtcatagttaatgacactcactctccaacttgtccctcc  25744300                 <---------AHL20(1)           <-----------ARR10                         <---------YAB1                 <---------AHL20(2)           --------->ARR14(2)                        ----------->GT1             <---------AHL20(2)               <---------ARR11(1)                        --------->ICU4            --------->AHL20(1)                <---------ARR11(3)                       <---------TOE2(3)           <---------AHL20(2)                 <---------ARR14(2)                      --------->YAB1         <---------AHL20(2)                   --------->ARR11(3)                      <---------ICU4 <---------ARR11(3)                          <---------CCA1(2)                       <---------ATHB12 <---------ARR11(1)      <-----------GT1------>MYB83                                 --------->ICU4 --------->ARR14(2)   <---------AHL20(2)------>MYB46(1)                            --------->YAB1 ---------CCA1(2)--------->AHL20(2)   ------->GAMYB                           --------->ZAT14  ------ ----->LBD16<---------AHL20(1)       --------->MYB46(3)                       <---------ZAT14 <------ --ALFIN1--------->AHL20(2)        <-----------GT1                      <-----------HVH21   <--------   ccaaatcttatatatatattttatttttttctctacttaaccaactcatatcttcactaaaaaacatactacaatgtcagtaaactaataatgtttaatg  25744400                                                                              <------------CBF                                                                             <---------ICU4                                                                             --------->ATHB12                                                                            <---------YAB1                                                                            --------->ICU4                                                                          --------->YAB1                                                                         <---------YAB1                                                                       <---------ICU4        ---------->DOF2                                                --------->YAB1 --------->ARR11(3)         --------->YAB1                            --------->ICU4 <---------ARR11(3)        <---------YAB1                          <---------AHL20(2) ----->GT1             <---------AHL20(2)           --------->ZAT6 --------->AHL20(1) ---TOE2(3)            --------->AHL20(2)      <---------AHL20(2)  --------->AHL20(2) -AHL20(2)             --------->YAB1          --------->AHL20(2) --------->AHL20(2)   --------->At4g35610   taaaatctaaaaaagacagattgaattatatgataagaatgggcaaaatttatatcactaaatttcaaaaaaattatgataattgaagaagcagagagtt  25744500                                                                                                  <--                                                                                                  ---                         --------->ARR11(3)                                                       <--                     <---------MYB52(1)                                                      --------                    <-------GAMYB                   --------->RVE1(1)                        <-------                   <---------MYB46(3)              --------->GLK1(2)                         <-------         --------->TGA2(1)--------->CCA1(2)        <---------ARR11(3)              --------->At4g35610         <---------bZIP60(1)          <----------DOF2          *TSS             =====================         --------->bZIP60(1)--------->CCA1(2)      --------->ARR11(3)           ---------->DOF2   ---   ttaagcccattacatcacaggctgttagatatatgagagactttggttttgaaaatctctctgagaaaatagacaattcagagaaagctccaattctcga  25744600        --------->ALFIN1       ------->MYC3       <-------MYC3      ===============================================bZIP_DOF      --------->O2      <---------O2      <---------TGA1a      --------->TGA1a -------HSFC1(2) ------>HSFC1(2)  --------->ARR11(3) -------HSFB2a(1) <-----------ARR10 ->HSFB2a(2)      <---------ARR11(3)                                --------->YAB1 --HSFB2a(2)     --------->CCA1(1)                             <----------DOF2 --HSFC1(1)----------->GT1                              <----------DOF2--------->YAB1 ===============bZIP_DOF                         <---------ALFIN1  <---------YAB1 --------->WOX13(1) ------>HSFB2a(1)--------->RVE1(1)        <----------DOF2     <---------ICU4    <---------ATHB12   agcatcccatgtggggataatatctccctctctcttctctctctctttgccactctctctttcatctttataatcaaaactaatcaatctctcttctctt  25744700                                                                     <---------ZAT14                                                            <---------ANAC58                     ------>ZmHOX2a(2)--------->ARR11(3)    <---------ANAC58                   <---------ARR11(3) <---------ARR11(3)<---------ANAC58                            <                   --------->ARR11(3)<---------CCA1(2)  <---------ANAC58                        -----               --------------------->WRI1     <---------MYB52(1)   --------->MYB46(3)         <------               <----------DOF2 ------>ZmHOX2a(1)     ------>ZmHOX2a(1)       <---------ZAT6   <------     <----------DOF2 =================HOX2a_HOX2a    <----------DOF2 --------->ZAT14   <---------ANAC46   ggaaactctttgtttcactttgatcttctcatcctctatatatcttcccttggtcctttcttgcttccaactacagagagtgttaacttgtgtatgatgt  25744800                                                                                          <------NtERF2                                                                                         <-----------HVH21                                                                                         ------>NtERF2                                                                                        <---------ANAC46                                                                                        <---------bZIP60(1)                                                                                       --------->RAP2.3(1)                                                                                       <------NtERF2                                                                                       --------->RRTF1(1)                                                                                       --------->ATERF1(1)                                                                                      <---------RAP2.3(1)                                                                                      <---------RRTF1(1)                                                                                      <---------ATERF1(1)                                                                                      <---------ORA47(2)                                                                                      <---------ERF1                                                                                      <---------RAP2.6(1)                                                                                      ------>NtERF2                                                                                     <---------RAP2.3(3)                --------->ALFIN1                                                     <---------RRTF1(3)              <---------MYB46(3)                                                     <---------RAP2.6(2)  --------->At4g35610  <------MYB83                                                  <---------DREB2C(2)  <---------At4g35610  <------MYB46(1)                                               <---------ANAC46 <---------ARR14(2)  <--------P                                                      <---------DEAR3(1) --------->ARR14(2) <-------GAMYB                                                    <---------RAP2.3(2) --------->GLK1(2) <---------ANAC46       <------ZmHOX2a(1)                          <---------RRTF1(2) ---------GLK1(1) <------NtERF2        <------ZmHOX2a(1)                            --------->RAP2.6(3) ---->ALFIN1  <---------DEAR3(2)  --------->ALFIN1                              --------->YAB1 ---bZIP60(2)<---------DEAR3(1)<---------AtMYB61                              --------->ANAC58 ---ANAC46----------->HVH21 --------->ALFIN1       <---------ZAT14            --------->ANAC58    ---   gggaatctgagagcgacggtggggttggagttggaggtggaggaggaagagagtatggtgatggagttttgagttctaacaagcatggcggcgtcaagac  25744900                                    ------>ZmHOX2a(1)                                --------->ARR11(3)                                --------->ARR14(2)                                <---------ARR14(2)                                     ----------->GT1                                <---------ARR11(3)                                   <------ZmHOX2a(1)                       --------->YAB1                                              <---------TOE1(3)                      <---------ATHB12                                             <---------TOE2(3)                     --------->ARR14(2)                                      --------------->AGL15                     <---------ARR14(2)<---------ALFIN1                     <---------ANAC58         <---------At4g35610    <-----------GT1  --------->ZAT14            --------------->AGL15         --------->At4g35610  ----------->ARR10  <---------ZAT14            <---------ANAC58     ---- ------>ATHB12    ----------------->AGL1  <----------DOF2     ---------->DOF2<---------------AGL15 <-   tgatgggtttgagcttagaggccaatcttggtaatatcctcacactttctctacagtctctgcaaaaagaacatgtttccttgttaaggaagttaatact  25745000                                         --------->ARR14(2)                                         --------->KAN4(2)                                         <---------ARR14(2)                             <-------GAMYB                            <-----------RAV1(1)                    ------>ZmHOX2a(2)                            --------->MYB52(2)                     <---------DEAR3(1)                        <------MYB46(1) --------->GLK1(1)         <------ZmHOX2a(2)                        <------MYB83    <----------TaMYB80       <---------ARR11(3)                       --------->MYB59 ---------->TaMYB80        --------->ARR14(2)                       <---------TOE2(3)<---------GLK1(1)        --------->ARR11(3)                   --------->ATHB12    <-----------ARR10         <---------ARR14(2)                   --------->YAB1      --------->ARR14(2)      ----------->ARR10<----------DOF2                  <---------ATHB12     <---------ARR14(2)      <---------YAB1 ------->TEIL              <---------ANAC58      <---------ANAC46 ------>ZmHOX2a(2)  <------NtERF2         --------->TOE2(3)  <---------MYB46(3)      <------ZmHOX2a(2)  ----------->RAV1(1) ----->YAB1   <---------ANAC58---------->ID1       --------->ARR11(3)  ------>NtERF2 --------CCA1(2)  <---------YAB1   <---------LBD16 <---------ARR11(3) ----------->HVH21       -------   catatcaaaaacctttgcctatgattaggtttgttgctacggatatccccagcgatcttctggttaagatcggcgacatgaactttcaccttcacaaggt  25745100  Previous    Next  AGI:  At5g64330.1    Description:  NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3); signal transducer. Identical to Root phototropism protein 3 (RPT3) [Arabidopsis Thaliana] (GB:Q9FMF5;GB:Q9SPB4); similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G30440.1); similar to hypothetical protein OsI_007587 [Oryza sativa (indica cultivar-group)] (GB:EAY86354.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60915.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64758.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000 Range:  from: 25744563    to: 25747584    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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