Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------------->AGL15        ----------------->AGL3       --------->MYB52(1)   <---------------AtSPL8                                 --------->KAN4(2)         ------->GAMYB   --------------->AtSPL8                     --------->DAG2               --------->TOE2(3)  ---------->DOF2                             <---------------AtSPL8 <---------AHL20(2) --->AHL20(2)                                ---------->DOF2   <---------CCA1(2) --------->MYB52(1) >YAB1 ------->TEIL                 ------->TEIL      ----------->GT1--------->AHL20(2)  --------->DAG2   attttaaagtacctgaaatagttcatgttgtctctatgtattttggaaaaagtacaaggttattcgtatatttaaaaacttaataaccgaaaaattggct  25723500                                                             ---------->DOF2                                                         ---------->DOF2                                                  <---------LBD16                                                 <---------LBD16                                                 <---------ANAC46                                                <---------LBD16        <---------WOX13(1)                    <---------ANAC58      --------->ATHB12               <----------DOF2<---------DEAR3(1)      --------->MYB52(2) <-----     <---------YAB1            ---------->DOF2<---------ANAC58     <----------DOF2        --------->TOE2(3)   cacctatatgattgaattcaacatgaaaattaacaaaggcttttgtttgcttcgggggtgaaagaaagcctttctagttagtttctattcaacttcaatg  25723600                                            <---------ARR14(2)                                        <---------ZAT2                                        <---------At4g35610                                        --------->At4g35610                                       ------>NtERF2                                   --------->ANAC46                                   --------->ANAC58                                   --------->ANAC58                                --------->ARR14(2)           <------ZmHOX2a(1)    <---------ARR14(2)               <---------DAG2    ---------->DOF2            <----------TaMYB80                --------->TOE2(3) ----------------->AGL1       ---------->TaMYB80     ---------->DOF2                           <----- ------RAV1(1)             ----------->GT1  --------->ARR14(2)   --------->TOE1(3)  <---------YAB1   ttggccaaaagaaggaggtatgcagcaataggtatatacgccagcttatctgcataaaagctgtataccttatctgtattgggcttctaattatctgatc  25723700                                            <----------DOF2       --------->ANAC58                                    --------->ATHB51              --------->ANAC58                                    --------->ATHB12             ------->TEIL                                   <---------YAB1           <---------ANAC58                                  --------->AHL20(2)        <---------ANAC58              --------->DEAR3(2)  --------->AHL20(1)        <---------ANAC46 ---------->DOF2            <<<<<<<ZML2           <---------AHL20(2)        <---------ANAC55(2)     --------->ZAT18              <---------AHL20(1)  <---------YAB1        --------->YAB1 ------------AGL1                --------->YAB1     <----------DOF2    <---------ATHB12        ------   aaatatggccactagaacagacgtagtgaccaaaattataattgggcttatgggctttgattacttgaacccaatctataaaagttattagcccaaatta  25723800                                                                          <---------AHL20(2)                                         <------MYB83                    --------->AHL20(2)                                  <------------CBF                       <---------AHL20(1)                               ------------>CBF                          <---------AHL20(2)                              --------->ANAC46                        --------->AHL20(2)                              ----------->RAV1(1)   --------->ZAT6   <---------AHL20(2)                              <---------ALFIN1   <---------ATHB12    --------->AHL20(2)                           --------->ANAC46  ------------>CBF       <---------AHL20(1)                        <---------ALFIN1 <------MYB46(1)           --------->YAB1            --------        --------->LBD16------>MYB46(1)   <---------DEAR3(2)     ------>ZmHOX2a(1)         --------->At4g35610   <---------WRKY18(1) ------>MYB83      <---------MYB46(3)    --------->TOE2(3)        --------->REM1(1)  ----------->HVH21  --------->DEAR3(1) <---------DEAR3(1)  --------->ARR14(2)       *TSS <---------At4g35610 --->AHL20(2)       --------->DEAR3(2) <---------ORA47(1)   <---------ARR14(2) <-----------GT1   aaacttgacccgaagtttaagaaccgactcccccacaattggtcggtttcaataactctccaaatcctaaaataatttttttttctggcttcatctggat  25723900                                             --------->At4g35610                                             <---------At4g35610                                  --------->ANAC46                                  <---------ALFIN1                               ------>MYB83  --------->LBD16                             <---------MYB111(1)                  <-----------HVH21                          <---------ALFIN1 <---------LBD16     <---------LBD16                     --------->ANAC58   --------->YAB1        --------->MYB52(1)             <----------DOF2 --------->AtMYB61       <---------GLK1(1)            <---------ATHB12 --------->TOE2(3)   --------->ANAC58  <---------ATHB12  <---------YAB1     <-----------GT1     <---- --->GT1     ------>ZmHOX2a(1) ------>MYB46(1) --------->DEAR3(1) <---------MYB52(1)          -------   aaaccctagttcatccttttctcacgctctacctccccacaatcatccgcagacgagttccgattaccggtgagttattctccaatcttcgtttcgatat  25724000                              <---------MYB52(1)                            <---------YAB1                     <---------WOX13(1)                    <---------YAB1                   --------->ATHB12                      <---------At4g35610 --------->GLK1(2)<---------AHL20(2)          <---------MYB52(1)      <----------DOF2         <------ -------GT1    <---------ARR14(2)           <---------ANAC58     <---------At5g28300      <----------DOF2 -->CCA1(2)    --------->ARR14(2)           <---------ANAC58    <-----------GT1   <-----------GT1   <   acgattctattctctcgtatttgattgattccgattgttttcaatttcgttttgttttcttctgattcactgctttgttgattttctcagttctttcttt  25724100                                                --------->LBD16                                             ================================HOX2a_HOX2a                                             =============================HOX2a_HOX2a                                             <------ZmHOX2a(2)                                            --------->AGP1                                            <---------ARR14(2)                                        ------>ZmHOX2a(2)                                        ==================================HOX2a_HOX2a                                       <------ZmHOX2a(2)                                       ===================================HOX2a_HOX2a                                      <---------AGP1                                      --------->ARR11(3)                                      <-----------ARR10                                      --------->GLK1(2)                      <XXXXXXXXXXXXXXXXXXXXMIR773                                      <---------ARR14(2)                    --------->ANAC58                                      --------->ARR14(2)                    --------->ANAC58                       --------->GLK1(2)=====================================HOX2a_HOX2a                 <---------MYB52(1)  <------NtERF2    ------>ZmHOX2a(2)    <-----------------------TaNAC69(2)               <---------ANAC46    <---------ANAC58   =======================HOX2a_HOX2a              <-------TEIL         <---------ANAC58  =====================HOX2a_HOX2a           <---------HSFC1(2)      <---------ANAC46  <------ZmHOX2a(2) ---------->DOF2            <--           <---------HSFB2a(1)    <---------LBD16    ========================HOX2a_HOX2a          <--        ---------->DOF2--------->ARR14(2)   --------->ARR11(3)        <------ZmHOX2a(1)     ---------  <---------ANAC58     <---------ARR14(2)   <---------ARR11(3)     <------ZmHOX2a(1)        <--------  <---------ANAC58  <---------ANAC58 <---------CCA1(2)====================HOX2a_HOX2a       <-------- ----DOF2  --------->HSFC1(2) <---------ICU4--------->ARR14(2)  <---------LBD16         --------->At4g35610 -----------RAV1(1) <---------ANAC58 <---------ARR14(1)         <-----------RAV1(2)     <---------At4g35610   ttttgctggagaaagcttcgttgagtatctgataatggcggatctagatccagagatcgctaaaactcaggaggaaagacggaagatggaagcagacctt  25724200                                                                                    <------ZmHOX2a(1)                                                                              ------>MYB83                                                                              --------->MYB52(1)                                                                              ------>MYB46(1)                                                                             ----------->HVH21                                                                             --------->MYB55(1)                                                                            <---------MYB111(1)                                                                            <---------MYB59                                                <---------ANAC58            <---------MYB52(2)                                             ------->GAMYB                  --------->MYB46(3)                                            <---------MYB52(2)              <---------MYB46(2)   ----                                            --------->MYB46(3)              <---------MYB55(2)   <---         <---------ZAT14                  <---------DOF5.7(2)               <---------MYB111(2)  <---         --------->ZAT14              <---------TOE2(2)                    --------->ANAC58      ---- -------ANAC58                     --------->ANAC46                        --------->ANAC58      <--- -------ANAC58               <------ZmHOX2a(2)  <---------ANAC58           <---------At4g35610   ---- >ARR11(3)                   ===================================HOX2a_HOX2a--------->ANAC46     <---- -ARR14(2)              ------>ZmHOX2a(2) --------->MYB52(1)            <---------ZAT18         <---- -ARR11(3)       <----------DOF2  <---------LBD16        ------>ZmHOX2a(1)------->TEIL <------ZmHOX2a(1)   gcttctctcacttctctgactttcgatcgcgatctatacggaggtaacgaccgtgcttcctactcgacttctattgcacctaacgaggaggatgatgcga  25724300                                                                           <---------ANAC46                                                                           <---------ANAC58                                                                           <---------ANAC58       --------->AtMYB61                                              <---------O2       <---------ALFIN1                                               --------->TGA1a    --------->ANAC46                                                  <---------ANAC46 ----->ARR14(2)                                                       <---------ANAC58 ------ARR14(2)                                                  --------->MYB52(1) ------ARR11(1)               ------>NtERF2                   --------->TOE2(3)    --------->ANAC46 ----->GLK1(2)               --------->DEAR3(1)        <-----------HVH21--------->ALFIN1 --------ARR10              --------->At4g35610        <--------ZAP1  <---------bZIP60(2)     ------- --->TEIL                   <---------At4g35610      <---------TOE1(2)--------->O2------>ZmHOX2a(1) -----ARR14(1)            ---------->CDC5           ------>ZmHOX2a(1) <---------TGA1a       <-------- -----CCA1(2)      <-----------RAV1(1)         <---------At4g35610    <---------ANAC58      ---------   atctggacaccactggttctcttgtggctcagcgcctcgcgtcttatactgctcctaggtcaattcttaacgacgtggctcgtcctcacaacgaagatga  25724400  Previous    Next  AGI:  At5g64270.1    Description:  splicing factor, putative. similar to RCN1 (ROOTS CURL IN NPA), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G25490.1); similar to PP2AA3/PR65 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G13320.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ81325.1); similar to hypothetical protein OsI_007081 [Oryza sativa (indica cultivar-group)] (GB:EAY85848.1); similar to hypothetical protein OsJ_005210 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21727.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains Int Range:  from: 25723885    to: 25728151    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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