Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->GLK1(2)                                           --------->ARR14(2)                                           <---------ARR14(2)                                           <---------ARR11(3)                                     <--                                           --------->ARR11(3)                                     <--                                           <---------GLK1(2)                                      ---                                          --------->HSFC1(2)                                      <--                ---------->DOF2           --------->HSFB2a(1)             --------->MYB52(1) <-------       --------->At4g35610                <---------HSFB2a(1)        ------>NtERF2  <---------ARR14(2)       <------NtERF2 ----------->GT1      <---------HSFC1(2)         --------->LBD16--------->ARR14(2)     <---------RAP2.6(2)                 ----------->ARR10<---------TOE2(3)        ------>MYB83   ---    <---------At4g35610     ------->GAMYB<---------KAN4(2)<---------TOE1(3)        ------>MYB46(1)---    --------->At4g35610     --------->TOE2(3)      <---------ICU4   --------->RAP2.6(2)----------->GT1 -->DOF2  <------NtERF2   <---------At5g28300     <---------YAB1 <-----------GT1 <---------MYB59 ----   aggtttagcggcagagagcaaagaggttaaccgtagacttgggaagattcttatcatttcaaggtttttgccgcacaaacagaccaaatcggtttataaa  25688000               ----------->GT1             <---------LBD16        <---------MYB52(2)       ------>MYB46(1)  <-----------GT1 -------ARR11(3) -------AHL20(2)          <---------ARR14(2) ------>ARR11(3)          --------->ARR14(2) -------AHL20(1)        --------->LBD16                          <---------TOE2(3) --YAB1------>MYB83   <---------LBD16                            <---------YAB1 ------>AHL20(2)    --------->GLK1(2)              --------->TOE1(2)      --------->ANAC58 ------>AHL20(1)  <----------TaMYB80    --------->LBD16   ----------->GT1 --------->ANAC46    ------- ----->AHL20(2)--------->LBD16        <---------LBD16  <------ZmHOX2a(1)  --------->ANAC58---------->DOF2   tatattaccaactaaaccggataatccggttctgtttttagccgggttttgaaccgaggattgaaataagattaacaaggaatataaggggctaaagcat  25688100                                            <----------DOF2                                          <------ZmHOX2a(2)                                         --------->AGP1                                         <---------ARR11(3)                                     <---------MYB52(1)                                  <------NtERF2                                --------->ARR14(2)                                <---------ARR14(2)                               --------->ATERF1(1)                               <---------At4g35610                              <---------ATERF1(1)                              <---------RAP2.3(1)                              <---------RRTF1(1)                             <---------RAP2.6(2)                             <---------ANAC58                             <---------RAP2.3(3)          --------->MYB46(3)                             <---------RRTF1(2)         *TSS                             <---------RAP2.3(2)      <---------MYB52(2)          --------->ARR11(3) <---------ANAC58         --------->MYB46(3)       --------->DAG2    <---------ANAC58--------->ARR11(3)                    <----------DOF2      ---------->DOF2    <---------ANAC58<---------AGP1------->GAMYB      <---------At4g35610   <---- ---------->DOF2   <---------YAB1------>NtERF2      --------->MYB52(1)----------->HVH21      <------- -->YAB1  <---------ARR11(3)<---------LBD16------>ZmHOX2a(2)  --------->YAB1 --------->At4g35610-----   aaataaagaaaagttcttcttatttttgtttgcggctccgatagatctttggagcaacgaacaaacatgagcttgacgctgcttcaaggctattcttctg  25688200                                                                             --------->CCA1(2)           --------->At4g35610                                              --------->ARR14(2)      >>>>>>>>>TBF1                                              --------->YAB1   ------->TEIL   >>>>>>>>>TBF1                                              --------->YAB1<---------ARR11(3) -----At4g35610              <---------LBD16   ------>NtERF2 --------->ICU4 <---------ARR14(2) --At4g35610             <----------DOF2      --------->DEAR3(1)--------->ICU4 <---------YAB1 ---->At4g35610  <------ZmHOX2a(1)   <----------ID1    --------->ALFIN1     --------->ARR11(3)      <   ctgaagaagaagaagcagaggagagagcttttggggattacgacaactccgacgaagatggggataatgatgttcggagatatgaatcgtcttctgtgtt  25688300                                                 --------->MYB52(1)                                              --------->At4g35610                                              --------->ZAT2                                   <------NtERF2----------->HVH21                                  --------->ORA47(1)                                 --------->ATERF1(2)                      --------->At4g35610     <---------ZAT2                      <---------At4g35610     <---------At4g35610                   ------>ZmHOX2a(1)        <-----------RAV1(2)                ------>NtERF2    <---------ATERF1(2)                                                -          <---------At4g35610    --------->DEAR3(1)                                                --          ----------->RAV1(2)   --------->ATERF1(1)<---------ETT(2)            <----------DOF2   ----          --------->At4g35610 --------->ANAC46----------->RAV1(2)  --------->ARR11(3)          <-----         ------->TEIL --------->LBD16     <-----------HVH21        <---------ARR11(3)      --------->AHL20(2) ---------GLK1(1) <---------ALFIN1------>NtERF2 ----------->TGA1 <---------TOE1(2)     <---------YAB1   tgatttctctgcatctgcctcctccgctaaaaacgccggccttccttcagctgacgacgttttctctcaggtcttccttctctttgattttgattttata  25688400                                    <-------TEIL                                   --------->ARR14(1)                                   --------->CCA1(2)                                  --------->ARR14(2)                                  --------->ARR11(1)                                            <----                                  <---------ARR14(2)                                      ------>ZmHOX2a(2)                                  <---------GLK1(2)                                     <---------AGP1                                 <---------HSFB2a(1)                                    --------->ARR14(2)                                 <---------GLK1(1)              --------->YAB1          <---------ARR14(2) -------->TOE2(3)               ----------->ARR10          <----------DOF2             <---------CCA1(2) ------->ANAC46          <---------ANAC58     <------------CBF <---------YAB1      <---------ANAC58 ----->ANAC46            <---------ANAC58   *TSS     ----------->GT1               <---------ANAC58 ------GT1       ---------->ID1<------ZmHOX2a(1) --------->ATHB12                  <---------ANAC46   cacctcaattcatcgaattgtcgttttccttgaggagattcgctgtgagattgaatggtttctttattatagatgaaaataagttacttggatctgtaga  25688500                              ------>ZmHOX2a(1)                              --------->LBD16                                   <---------ZAT6                             --------->TOE1(2)                        ------>ZmHOX2a(2)                            ----------->RAV1(2)                      <------ZmHOX2a(2)                          --------->ARR14(2)                        <---------ARR11(3)                        <------ZmHOX2a(1)                           --------->ARR11(3)                  <---------ZAT6                                    --------->AGP1                 <---------TOE1(3)                                  --------->ARR14(2)        =============================HOX2a_HOX2a                    <---------ARR14(2)              <        ------>ZmHOX2a(2) <---------ARR14(2)                        --------->ARR14(3)             <-        =======================HOX2a_HOX2a <------MYB46(1)          <---------ARR14(3)            <--       <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <------MYB83            <---------GLK1(1)              ---      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)--------->MYB59          --------->GLK1(1)   <----------DOF2    ----------->HVH21 --------->MYB59     <---------AtMYB61   ---------->DOF2 ----------->GT1     --- -----ARR14(2)   <---------TOE2(3)      <---------MYB52(1) --------->YAB1 <---------YAB1      <------   tttgatgtgatcggaatttagggttaggaatcctgagactaggttaggtttggggtttgaataataaagagatcttctgatagtgaaaacttttcagtgt  25688600       <------MYB83                                                                  <---------HSFC1(2)       <------MYB46(1)                                                               --------->HSFC1(2)       <---------MYB46(3)                                                            --------->HSFB2a(1)       ----------->GT1                                                          <------NtERF2    <---------ANAC46                                                            <---------LBD16    <---------ANAC58                                                           ------>NtERF2    <---------ANAC58                                                           --------->MYB52(1)  -- ---------MYB52(1)                               xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->LBD16 --- ------GAMYB                                     <---------ANAC58             <---------ALFIN1    --- -------MYB46(3)                                 <---------ANAC58    --------->GLK1(1)           ---- ------>MYB55(2)                      <---------WOX13(1) <---------AHL20(2)  <---------ABI4(2)  ----- ------>MYB52(2)         --------->DAG2      <----------DOF2         <---------GLK1(1)         ------ ---ZAT6                ---------->DOF2  <---------GLK1(2)          <---------ARR14(2)        -------   tcgttggcttggttacttcttactcgaaaagcttatagtgaatgattctttgcttctattgaattttgcagatttcagggccaccggagtttctaaacaa  25688700 ------->ZAT18 ---->GAMYB                               --------->ANAC58 ------>RAP2.6(2)                         --------->AtLEC2 ----->MYB46(3)          --------->At4g35610                                        --------->DAG2 --->P     --------->ARR11(3)             --------->ANAC58              ----------->GT1      <------- --->MYB52(1)            <---------At4g35610                          ---------->DOF2      --------->ANAC46 -->MYB46(3)      ------->TEIL    <-------TEIL                 ---------->DOF2    ---------->DOF2  <-   ccgcacagaagcagataatgaagcttcagctagagatgcagaacatgcaaatcgtattagtcgcaaaaagaagaaagttaaaccaaaaggtagccacaac  25688800                                              <---------At4g35610                                          <----------DOF2                                        ----                                       <---------ARR11(3)                                     <------                                      --------->REM1(1)                                       <------                                  ----------->GT1                                  --------->ZAT18---                                 --------------->AtSPL8                        <---------TOE2(3) <---                                 <---------------AtSPL3                  <------MYB46(1)      -------    <---------AtLEC2             <---------------AtSPL8                  <------MYB83         <------ --ALFIN1                        --------------->AtSPL3                  ----------->GT1    --------- ---------DOF2      <---------TOE2(3)<-------TEIL              <-----------GT1---------->DOF2<-------   tcttttgcatcgtcttagcattttggttatagggaatggtacatctttagatgatgttgaagaatttacatcagtaggtttaaagttcacaagattacgg  25688900  Previous    Next  AGI:  At5g64150.1    Description:  methylase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO23842.1); contains InterPro domain Modification methylase HemK; (InterPro:IPR004556); contains InterPro domain Methyltransferase small; (InterPro:IPR007848) Range:  from: 25686057    to: 25688444    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g64160.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO49690.1) Range:  from: 25688156    to: 25689689    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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