Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->TOE2(3)          <---                                                                   ----------->RAV1(1)         <-----     --------->At4g35610                                     --------->At4g35610              <------ ----->RAV1(1)                                               <---------At4g35610        <---------YAB1 ----AtSPL8                   --------->ATHB12           --------->ARR14(2)           <---------ICU4 --->AtSPL8            --------->GLK1(2)                 <---------ARR14(2)          --------->ICU4   caaaatttgctgcaagagtttggagactctattgatttgaagatgctcgacatgttcgagttctgcttccaacataaaccaagttccattatgaaatgcg  25616300                                                                                        ---------->DOF2                                                                                       --------->AHL20(2)                                                                                       <---------AHL20(2)                                                                                      <---------YAB1                                                                                    <---------ICU4                    -------->P                                                     <---------ATHB51                 <---------At4g35610                                               --------->ICU4     --------->TOE1(3)     --------->ZAT14                      ------>ZmHOX2a(1)  <---------AHL20(2)     --------->TOE2(3)     <---------ZAT18                  --------->ARR14(2)     --------->AHL20(2)   ------->TEIL  --------->At4g35610                        <---------ARR14(2)    <---------AHL20(1)   -------->P--------->STY1(2)                              ------->TEIL       <---------AHL20(2) ---NtERF2   <---------STY1(2)                   <---------ANAC58              --------->AHL20(2) ----RAP2.6(2)  --------->MYB59          <---------MYB59 <---------YAB1        --------->AHL20(1) ---LBD16--------->STY1(2) --------->ZAT18       <---------ANAC58           --------->YAB1   gcatcaaccttagctagttagctaccaagtgtaccatcacttgcctaattgtcttggtcatgaatcctgatatactaaaaataaaataattaaagagagg  25616400                                                                       <---------TOE1(3)       <-----                                                                       <---------TOE2(3)       ------                                                                       --------->DAG2          ------                                                                    <---------AHL20(2)        <------          <---------YAB1                                          <---------YAB1              -------        --------->YAB1                                       --------->ZAT6                   <------ --------->ARR14(2)                                  <---------YAB1--------->YAB1       ------>ZmHOX2a(2) <---------ARR14(2) <------ZmHOX2a(2)  --------->GLK1(2)<------ZmHOX2a(2)        <----------DOF2   tcgaattctcttataattgtagatcaaatgaacaatgaacgattctatgtgtatcacgatcgaactctattataaggttgtctcttttgatctacaatta  25616500                                                                                     <---------ICU4                                                                                     --------->ATHB51                                                                                     --------->ATHB12                                                                                     <--------ATHB1                                                                                    --------->ICU4                                                                                    --------->AHL20(2)                                                                                    <---------YAB1                                                                          <---------AHL20(2)                                                                     <---------AHL20(2)                                                                    <---------ARR11(3)                                                                    <---------AHL20(2)                                                                    --------->AHL20(2)        -------                                                                    --------->ARR11(3)        -------                                                                    <---------AHL20(1)        -------                                                                    --------->AHL20(1)        -------                                                            ----------->RAV1(1)     <---------AHL20(2) <---------MYB52(1)                                        ------->GAMYB  <---------YAB1      <------ ----ICU4                    --------->ANAC58              <---------ETT(1)         <---------ATHB51 -->ATHB1                  ---------->DOF2               <---------At4g35610       --------->AHL20(2) --->ATHB51    --------->YAB1--------->ANAC58            --------->At4g35610       <---------AHL20(1) ---ATHB51    <---------ATHB12                        --------->WRKY18(1)--------->AHL20(2)  -------- -->ICU4    --------->WOX13(1)       ---------->DOF2 <-----------HVH21   <---------AHL20(2)  -------- ---YAB1<-----------GT1<---------ANAC46         --------->ATHB12   --------->AHL20(2)-------->HAHB4 -   ttcgttttttttagcaatcaaaacttcgtataagcacttaaaagtcttaaacattggtcatccgacaaaatatattttaattcaaaataattgcaaccac  25616600                             --------->YAB1                             <---------ICU4      --------->DAG2         -------->HAHB4     ---------->DOF2        <---------YAB1 -->TOE2(3)              >>>>>>>>>GT-1 -->YAB1              ----------->GT1 >GAMYB    <---------ANAC55(2)                                 ------>ZmHOX2a(1) -------->AGL15       <------MYB83                            --------->TOE1(3) ---------AGL15       <------MYB46(1)                         --------->TOE2(3) --------->AGL3  --------->ATHB12                       --------->DAG2 ->MYB46(3)--------->ANAC55(2)                         ---------->DOF2                 <---------CCA1(2) -------->YAB1--------->MYB52(1)                  ---------->DOF2            <------------CBF   aataagaaaaagtccgtaacgatttggttaataatagcattgtctagggacttaaagaaaagttccttaaaaaacttcacattgacatcaaatctctaat  25616700                              ----------->GT1                      --------->GLK1(2)                      <---------ARR14(2)                   <------NtERF2                  --------->LBD16                                        --------->ZAT18                 <---------ANAC58                                      <---------At4g35610                 <---------ANAC58                                      --------->At4g35610                 <---------ANAC46       *TSS                           --------->ZAT2                <---------LBD16 <---------ANAC46                     ------->PIF5                 <--      --------->TOE2(3)      <---------AtMYB61   <-----------GT1     <-------PIF5        <---------GLK1(2)      --------->TOE1(3)      --------->ALFIN1<----------DOF2   --------->AtMYB61      <---------ALFIN1   agcaaaacccttaaaactggcgggaatcggagtggtgtatagtctcactttctacttctctcagacctccacgagctcacaaaatcacacacattctctt  25616800                                                                               <------NtERF2                                                                              ------>NtERF2                                                                              --------->LBD16                                                                              <---------MYB46(3)                                                                             <---------ANAC46                                                                          --------->DEAR3(1)                                                                          <---------ATERF1(2)                             ------>ZmHOX2a(2)                          --------->MYB52(1)                             ===================================HOX2a_HOX2a <---------MYB52(1)                            <------ZmHOX2a(2)                    --------->ANAC58                            --------->ARR14(1)                   --------->ANAC46               --------->ANAC58 <---------MYB52(1)            <---------ARR14(2)               --------->ANAC58--------->LBD16        ------>NtERF2    <---------ALFIN1           --------->MYB46(3)<---------LBD16         <---------ALFIN1  --------->AtMYB61          --------->ANAC46  ====================================HOX2a_HOX2a <---------LBD16          --------->ANAC58 --------->AGP1          <---------ATERF1(1)<---------MYB55(2)          --------->ANAC58 <---------AGP1  --------->DAG2     --------->ARR14(2)   --------->ANAC58     --------->At4g35610   <---------ARR14(2)     ------->GAMYB  --------->ANAC58<--------P     <---------At4g35610   --------->ARR14(2)     --------->DEAR3(1)  --------->MYB46(3)  <<<<<<<<<<E2Fa           --------->ARR11(3)     --------->RAP2.6(2)------>NtERF2 --------->ANAC58  <<<<<<<<<<E2Fe           --------->ARR11(1)    --------->MYB46(3) <---------ALFIN1  <<<<<<<<<<E2Fc         ----------->ARR10---------->DOF2------>ZmHOX2a(1)--------->ATERF1(2)  <<<<<<<<<<E2Fd    --------->ICU4 --------->GLK1(1) --------->DEAR3(1)--------->DEAR3(1)   --------- --------DOF2---------->DOF2--------->CCA1(2)   <---------ATERF1(1) --------->ANAC46       >>>>>>>>>>   cttttcccgctcacccaaagccatgaatagatccggtatttccaaaaagcgaccgcctccttcgaataccccaccaccggcgggtaagcatcgagccact  25616900                                                                       --------->ANAC58                                                                       --------->ANAC46                                                                       --------->ANAC58                                                                   --------->HSFB2a(2)                          --------->ARR14(2)               <---------ANAC46                <------NtERF2                  ------>NtERF2                            <---------ANAC58               ------>NtERF2                 --------->LBD16                           <---------bZIP60(2)           --------->DEAR3(1)                 ------>NtERF2             <---------AHL20(2)      <---------HSFB2a(2)   <---------DEAR3(1)       --------->ANAC46   <---------ARR14(2)  <---------YAB1 --------->ALFIN1         <---------DEAR3(1) >MYB46(3)--------->AtMYB61              ------->TEIL      <---------ANAC58          --------->SPL7 >>>>>>>LFY    <---------LBD16        <---------YAB1     <------ZmHOX2a(1)      <------------------SPL14   ggtgattcaacaccatctccggccatcggaaccctagatgatgaatttatgatggaagaggacgtgtttctggacgaaactctcttgtacggcgacgaag  25617000                                                                                  <---------CCA1(2)                                                                                 <-----------ARR10                                                                                 <---------ARR11(1)                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)                                                                                 ------->TEIL                                                                                <---------CCA1(2)                                ----------->GT1<---------LBD16               ------>NtERF2                  --------->LBD16        <---------ANAC58                    --------->LBD16               ------>ZmHOX2a(1)<---------ANAC58               --------->AtMYB61<---------ARR14(1)       --------->TOE2(3)        <---------ANAC58   <---------ANAC58        <---------LBD16    --------->GLK1(1)           <---------ANAC46   <---------ANAC58--------->At4g35610    --------->ARR14(2)    <---------GLK1(1)        <------ZmHOX2a(1) ------>ZmHOX2a(1)   <---------At4g35610--------->HSFB2a(2)  <------ZmHOX2a(1)----------->HVH21     <---------ANAC58   <---------ALFIN1--------->LBD16   atgaggaatccctaatcctccgtgacattgaggagcgtgaatcgcgttcctcggcttgggctcgacctccgctctcccccgcgtatctctcgaattcaca  25617100                 --------->TOE2(3)                   --------->HSFB2a(2)                 --------->YAB1                      <---------HSFB2a(2)         <---------ANAC58                           <---------ANAC46         <---------ANAC58                           <---------ANAC58        --------------->AtSPL8                      <---------ANAC58        <---------------AtSPL8                   <---------WOX13(1)      <---------MYB52(1)                       --------->ATHB12                         --------->ATHB12     <---------At4g35610                       <---------ICU4               <---------GLK1(1)     --------->At4g35610                      <---------YAB1        <---------ALFIN1   <---------YAB1   gagtatcagttgagtactatcttagtttgataagggcttcttcatcttatgattgctggaaaatttctcaacacttggatttgtgtattttgatttgttt  25617200  Previous    Next  AGI:  At5g63960.1    Description:  EMB2780 (EMBRYO DEFECTIVE 2780); DNA-directed DNA polymerase. Identical to DNA polymerase delta catalytic subunit (POLD1) [Arabidopsis Thaliana] (GB:Q9LVN7); similar to ATREV3 (Arabidopsis thaliana recovery protein 3), DNA binding [Arabidopsis thaliana] (TAIR:AT1G67500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68524.1); similar to hypothetical protein OsJ_031896 [Oryza sativa (japonica cultivar-group)] (GB:EAZ17687.1); similar to hypothetical protein OsI_034180 [Oryza sativa (indica cultivar-group)] (GB:EAY80221.1); contains InterPro domain DNA-directed DNA polymerase, family B, exonuclease; (InterPro:IPR006133); contain Range:  from: 25616740    to: 25624067    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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