Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------ARR14(2)                        --------->ARR14(2)                   <---------DEAR3(2)                  <---------DEAR3(1)                  <---------ATERF1(2)                 --------->ATERF1(1)                ------>NtERF2                --------->ABI4(1)                <---------ATERF1(1)               <---------DEAR3(1)               --------->RAP2.3(2)               <---------ATERF1(2)               --------->DEAR3(1)               --------->RAP2.3(3)              --------->ORA47(2)              --------->RAP2.3(1)              --------->RRTF1(1)              <------NtERF2              --------->ATERF1(1)              --------->DEAR4(2)              --------->ERF1              --------->RAP2.6(1)             <---------RAP2.3(1)             <---------RRTF1(1)             <---------ATERF1(1)             ------>NtERF2                        --------->LBD16                          <---------ARR11(3)            <---------DEAR3(1)                   --------->TOE1(2)                         --------->ARR11(3)         ----------->HVH21                       --------->DEAR3(1)                       <---------GLK1(1)   --------->YAB1<------NtERF2       --------->ANAC58                                     --------->GLK1(1) --------->GLK1(2)--------->ATERF1(2)--------->ANAC58                                  --------->LBD16 ->At4g35610--------->DEAR3(1)  <------NtERF2  --------->MYB52(1)                     <---------HSFB2a(2) -DEAR3(1)  --------->ANAC46   --------->LBD16<---------ARR14(2) --------->MYB52(1)   --------->HSFB2a(2) -MYB46(3)<---------ATERF1(1) --------->DEAR3(1)--------->DEAR3(2)            <---------WOX13(1) -HVH21 ------>ZmHOX2a(1)    <---------LBD16  --------->ARR14(2)--------->ZAT18      <---------LBD16   gagaatcatcctcgacgccgccggtggaatcgccggagcaaggtagaagaaccggcgatagtagagcgaacagaagggagattgctatcgggaaatcttt  25591300                  <---------DAG2              --------->WRKY12                      <---------ATHB12                                -              --------->WRKY38(1)                 --------->WOX13(1)                       --------->ZAT14             *TSS <----------DOF2               <---------YAB1                             <---------ZAT14      <---------WRKY45                          ------------>CBF             --------->MYB52(1) -----      <---------WRKY12                 ----------->GT1            <---------ZAT18      --------->ZAT6      <---------WRKY38(1)            <------------CBF   ------>NtERF2       ------>ZmHOX2a(1)   <----   cattttagtcaacgagttgactttatcgctctctctctcgattgtaaattatcaatgaggccttcttgggcccttatcctatcggactaactctatagtg  25591400              <---------AHL20(2)         --------->AHL20(1)                                                       ------>ZmHOX2a(2)         <---------AHL20(1)                                                      <------ZmHOX2a(2)   ----------->GT1                                                              <---------ARR11(3)   <----------ID1              <---------AHL20(2)                               --------->ARR14(2)  ----------->GT1              --------->AHL20(2)                               --------->ARR11(3)  <---------TOE2(3)        <---------AHL20(2)                                   --------->AGP1 --------->DAG2            --------->AHL20(2)                                   <---------ARR14(2) --------->DOF2       <---------AHL20(2)   --------->ZAT18   <---------AHL20(2) <---------AGP1      < ---->ZAT18 <---------YAB1<---------AHL20(2)        --------->ARR11(3)   --------->At4g35610       -- -----ZAT18 <---------AHL20(2)<---------AHL20(2)---------->DOF2          <---------At4g35610       <-   cataaaggaaaaatattattttgttttatttatttattttgcaagtgttctaaagaaattgaattaatctcattaagctcaagatctatattctatacga  25591500                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                    <---------LBD16                             <----                                                  <---------ARR14(2)                            -----                                              ------>ZmHOX2a(2)                             ------->GAMYB                                             <------ZmHOX2a(2)                              <--------                                            --------->ARR14(2)                           <-----------GT1                                            <---------ARR14(2)                         --------->DOF5.7(2)                                       -------->P --------->ARR14(2)                  --------->TOE1(3)            --------->YAB1             --------->MYB52(1)                             <----------DOF2           <---------YAB1             --------->MYB52(1)                              --------->TOE2(3)   --------->YAB1                   <---------MYB52(2)                           <------ZmHOX2a(2) -----------GT1                    --------->At4g35610                          --------->ARR11(3) ------->AHL20(2)          --------->YAB1 --------->LBD16                       <---------ARR11(3) --------AHL20(2)         <---------YAB1<---------LBD16    <---------YAB1      --------->At4g35610   tttaaacatacttatcatatagtcatatatcataagaagctaaccggatccgagtccggttttgattcaatttcaattgtgagatcaactttaaccgaat  25591600                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              <------                                                                    <---------STY1(2)         <------                                                                --------->YAB1            >>>>>>>>>>E2Fc                                                            --------->AtMYB61             >>>>>>>>>>E2Fe                                      <-----------HVH21    ----------------->AGL2         ----------- ---->ATHB1                          <------MYB83          ------------>CBF               >>>>>>>>>>E2Fa ----->ATHB51                        <------MYB46(1)     --------->AtMYB61                >>>>>>>>>>E2Fd ----->ATHB12             --------->HSFB2a(2)           --------->MYB46(3)          ---------->DOF2 -----ATHB51   <----------ID1       --------->MYB59   --------->bZIP60(1)       --------->YAB1------- ---->ICU4 ---------->DOF2--------->ANAC46         ----------->HVH21--------->STY1(2)    ----------->GT1 -MYB59<---------------AGL15      <---------MYB52(1)  <---------bZIP60(1)      <---------YAB1--------   tattgaagcccattaaaggcacaaatttccacaactgttcggtcagtgtctcagtgacaccaccaatagtagctaggctatatcataagagcgggaaaat  25591700                                                                                ----------->HVH21                                                                               <-----------HVH21                                                                              <---------TGA1a                                                                              --------->TGA1a                                                                              <---------O2                                                                              --------->bZIP60(2)                                                                           --------->PCF5                                                                          ----------->TCP11(1)                                                                          --------->ATERF1(1)                                                                          <------NtERF2                                                                         --------->ABI4(2)                                                                         <---------ATERF1(1)                                                                         ------>NtERF2                                                                        <---------DEAR3(1)                                                                        --------->ALFIN1                                                                       <------NtERF2                                                                       <-------GAMYB                                                                       =================MYC_MYB                                                                       --------->ATERF1(1)                                                                      <---------ATERF1(1)                                                                      <---------MYB46(3)                                                                      <---------DEAR4(2)                                                                      <---------ORA47(2)                                                                     --------->ALFIN1                                                                ========================bZIP_bZIP                                                                =====================================                               <------------AtMYB77             <---------bZIP60(2)                               ===========================================MYC_MYB                   <                              -------->P                        --------->O2  =======================                              <---------At5g28300               <---------TGA1a--------->LBD16     --                              ============================================MYC_MYB                 <--                             --------->MYB52(1)                 <---------O2 <------NtERF2        <--                         <-----------GT1           --------->LBD16  <---------ABI4(1)            <---                        --------->ICU4            <---------ATERF1(2)<---------DEAR3(1)        ------ ----ARR14(2)      ----------->GT1<---------MYB52(1)     <-----------HVH21<---------TCP16(2)  <------ --->ARR14(2)      --------->ANAC55(1)            --------->ATERF1(2)<---------DREB2C(2)      <------ -->HSFC1(2)       --------->ANAC58              <---------LBD16===============MYC_MYB--------->ALFIN1 ---HSFC1(2)       --------->ANAC46  <---------TOE1(3)  <---------bZIP60(1)<---------PCF2     ------- ---HSFB2a(1)      <---------ANAC55(2)       <----------DOF2 ----------->HVH21--------->O2  ------->TEIL >GT1   XXXXXXXXXXXXXXXXXXXX>MIR863-3P       =============================bZIP_DOF   >>>>>>>>>TAC1<-- -->HSFB2a(1)      --------->ANAC58  <---------TOE2(3)  --------->bZIP60(1)--------->TCP16(1) ------- --->ARR10    *TSS --------->ANAC55(2)       ===========================================bZIP_DOF <---   tcgcctactgaaaacaaaaaaacgtaattactaaccgttagggttttctttaccggcgatgtcgcgacgaggcggtggccccgtgacagtgttgaacgtg  25591800           <---------ANAC58           <---------ANAC58    --------->GLK1(2)  ---------->DOF2                                        --------->ARR14(2) ============bZIP_DOF                                  --------->LBD16 ------NtERF2                     --------->GLK1(2)   <---------HSFB2a(2) ============bZIP_DOF            --------->ARR14(2)   --------->HSFB2a(2) ------->LBD16              <---------ANAC46         <-----------------AGL1            --------->ARR14(3) -------ANAC46      <-----------HVH21                ----------------->AGL1      ----------->RAV1(1) -------ANAC58  <---------ANAC46 <---------ARR14(2)  <---------LBD16  <------MYB83     <---------ARR14(3) ---NtERF2--------->SPL7    <---------ANAC58      <----------DOF2     <------MYB46(1)  --------->ARR11(3) --->ALFIN1--------->MYB52(2) <------NtERF2      --------->HSFB2a(1) <---------AtMYB61 <---------ARR11(3) -MYC3  <-----------HVH21   <---------DEAR3(1)   <---------HSFB2a(1) --------->MYB59   --------->ARR14(2) -MYC2  <---------RAP2.6(3)<---------LBD16 --------->LBD16           --------->MYB46(2)--------->GLK1(2) >MYC3  <---------SPL7   --------->ALFIN1<---------LBD16 <---------ARR14(2)     --------->REM1(1) -------ANAC58 <------NtERF2<---------ANAC58     --------->HSFC1(2)  --------->MYB111(1) >MYC2 --------->DEAR3(1)----------->HVH21<---------ANAC46  <---------LBD16--------------->AtSPL8 ------LBD16 --------->ALFIN1--------->LBD16     <---------HSFC1(2) <--------P --------->SPL7   gcggagaagccgtccgtggcgaagtcagtggcggggattctatcccgtggaactttccggactcgggagggtaggtctcggtacaacaaaatcttcgagt  25591900                                                                                      ---------------                                                                                      <--------------                                                                                     ----------------                                                                                     <---------------                                                                                     ----------------                                                                                     ----------------                                                                                     <---------------                                                                                     <---------------                                                         ----------->HVH21           <---------------                                                       --------->O2                  ----------------                                                       <---------At4g35610          <---------DOF5.7(2)                           <---------SPL7              <---------ZAT2               <---------At5g28300                          <---------ANAC58             ----------->RAV1(2)      <---------MYB46(3)                          <---------ANAC46            ------>NtERF2             ------>ZmHOX2a(2)                   <---------ZAT2                    <---------ALFIN1           =====================                   <---------At4g35610            --------->ANAC46             ======================                   --------->At4g35610          <---------At4g35610            <------ZmHOX2a(2)                   <------NtERF2  <---------ICU4--------->At4g35610           <---------ARR14(2)    -    --------->ANAC55(2)   <---------ANAC58    <---------WRKY12                --------->ARR14(2)   --    --------->ANAC46    <-----------HVH21    <---------MYB52(1)             --------->DEAR3(1)   ----    --------->ANAC58 <---------ANAC58       <-----------HVH21           --------->ZAT18--------->LBD16    --------->ANAC58 <---------ANAC58       <-----------TGA1     <---------ANAC58 --------->DOF5.7(2)    <---------ANAC55(2)--------->ALFIN1    --------->ANAC46      <---------ANAC58<-------GAMYB   ----   tcgattacgccatcaatgggcagccgtgtcgtatgctaatgacctccgtcatcggccacctgatggagcttgagttcgccgatcgttaccgcaaatggca  25592000                ------>ZmHOX2a(2)               <------ZmHOX2a(2)              <---------AGP1              --------->AGP1              --------->ARR14(2)              <-----------ARR10   ----------->HVH21 ======================HOX2a_HOX2a ------>ZmHOX2a(1) =====================HOX2a_HOX2a >AGL15       <---------ARR11(3) -AGL15       --------->ARR11(3) ->AGL2     ----------->ARR10 --AGL3   <------NtERF2 ->AGL3  <-----------HVH21 ->AG    --------->LBD16           <---------YAB1 --AGL2 --------->ANAC58       <-----------HVH21 --AGL1 --------->ANAC46    <---------LBD16      --------->LBD16                     --------->ATHB12 --AG   --------->ANAC58 --------->ZAT2         --------->LBD16                    <---------WOX13(1) ->AGL1<---------LBD16   <---------ZAT2        <---------HSFB2a(2)          --------->ANAC58 =======HOX2a_HOX2a     --------->ANAC58   <-------MYC2                     --------->ANAC58 =======HOX2a_HOX2a     ------>MYB83       <-------MYC3                     --------->ANAC46 -------->TOE1(2)       --------->ANAC58   ------->MYC3                  <---------ZAT18 --------->RAV1(2)      ------>MYB46(1)    ------->MYC2                  --------->ZAT18 ----->ANAC58 <---------ARR14(2)--------->WRKY18(1)                      <---------ZAT14 <---------AHL20(2) ----->ANAC58<---------CCA1(2)--------->LBD16  --------->HSFB2a(2)       --------->ZAT14--------->AHL20(2)   ctcctgcgacccggcagatctgtaccaagctccggtcatgaaacacgttcccgaggtaattctattgtatgtgtgtgcacgcctaattgatttaatgtcc  25592100                                <-------GAMYB                               <---------MYB46(3)                               --------->MYB55(2)                               --------->MYB111(2)  --------------->AGL15 <---------ANAC58                              <--------P            --------->HSFB2a(2)<---------WOX13(1)                             <-------GAMYB          <---------------AGL15 <---------ANAC58                             <---------ANAC58   <---------ANAC58     --------->ATHB12                         <---------LBD16   <---------ICU4            <---------MYB46(3)                       <---------AGP1      --------->ATHB12  <------ZmHOX2a(1)             <----------DOF2 <---------ANAC58   <---------ANAC58    <---------YAB1   cattgtacttgtatgcttttgtatagttctgggttgttgatttagtcattgcttctctaactaggaattgttgattgggtctgatttgttttggtaattg  25592200  Previous    Next  AGI:  At5g63910.1    Description:  FCLY; prenylcysteine oxidase. Identical to Probable prenylcysteine oxidase precursor [Arabidopsis Thaliana] (GB:P57681); similar to unnamed protein product [Vitis vinifera] (GB:CAO71675.1); contains InterPro domain Prenylcysteine lyase (InterPro:IPR010795); contains InterPro domain Prenylcysteine oxidase (InterPro:IPR017046) Range:  from: 25589091    to: 25591313    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g63920.1    Description:  DNA topoisomerase III alpha, putative. similar to DNA topoisomerase family protein [Arabidopsis thaliana] (TAIR:AT2G32000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68531.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ49689.1); similar to DNA topoisomerase III (GB:AAB03695.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain DNA topoisomerase, type IA, DNA-binding; (InterPro:IPR003602); contains InterPro domain Toprim subdomain; (InterPro:IPR006154); contains InterPro domain DNA topoisomerase, type IA, central region, subdomain 1; (InterPro:IPR01 Range:  from: 25591714    to: 25598504    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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