Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                             <-------                                                   <---------ZAT14                          ---------                                      <---------YAB1                          --------->ANAC58 ------         <---------ANAC58           --------->YAB1 --------->ZAT14            --------->ANAC46<------ ------ZmHOX2a(2)     --------->DOF5.7(2)  --------->ATHB12                   --------->ANAC58------- ->YAB1  <---------ANAC58     <---------ARR11(3)  <<<<<<<<<<<<<<<<<LFY ----------->GT1  --------->ZAT6   agatcgaacttgcttcaattcatcgtttacattatctctcatgaatgattcagtacattggacactgtgagatttgtaacaaggaagggaacagtaccgg  25561900                           <---------ARR14(2) -----MYB52(1)          --------->HSFB2a(2) --LBD16                <---------HSFB2a(2)                 --------->REM1(2) >MYB52(1)       --------->ZAT18                          --------->LBD16              -------------- --->LBD16<------ZmHOX2a(1)--------->ARR14(2)           <---------LBD16       ------->GAMYB<--------- ---HSFB2a(2)    <---------ZAT14          <-------TEIL--------->GLK1(2)    --------->MYB52(1)      -- -->HSFB2a(2)    --------->ZAT14  <---------ICU4  <---------At4g35610 ----------->GT1 ------->TEIL---   aagttgcagcgaggacaagtgtactgcgagaactgcttattacatacatggcagataatccgcgtagaagaagggtttaacggagacgaatttgaactct  25562000                                                                   <---------WOX13(1)              -- --------->ANAC58                                            <----------DOF2                     ---- --------->ANAC58                                  <---------TOE2(3)               --------->HSFC1(1) ------->WRI1       --------->LBD16         --------------->AGL15 <------------CBF <---------HSFC1(1) --GT1--------->ICU4------>NtERF2          <-----------------AG  --------->ATHB12  --------->HSFB2a(2) ---->NtERF2       --------->ANAC46        ----------------->AG <---------YAB1     <---------HSFB2a(2) ------>DEAR3(1)  <---------LBD16 ---------->DOF2  <---------TOE1(3)            --------->AGP1  <----   ccgacgaaataatcgtcttctccggcatcatcttcagaaagctattccaaattagggttttgacttttgattgaagaagacaggtctagaaacttacata  25562100                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                              -------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                            <--------                                                                                          <---------ARR14(2)                                                                                        ----------->HVH21                                                                                        <---------SPL7                                                                                       --------->DEAR3(1)                                                                                       --------->MYB46(3)                                                                                      --------->ANAC46                                                                                      <---------LBD16                                                                                      ----------->RAV1(2)                                                                        <-----------HVH21 --------->ARR14(2)    --------->YAB1                                             --------->YAB1<---------ARR14(2)   --- ---------->CBF                                               <---------YAB1 --------->ARR14(2)  <--- ----->ANAC46                    ------->TEIL                <---------AHL20(2)      --------->MYB52(1) ---TEIL                <------NtERF2   <----------DOF2      --------->AHL20(2)    --------->MYB46(3)   caccaattttaaaatcgagtttgggccgaattatggaccgtactttgggctatgggccttcattttaataaacaggtcggatatatccaccggacccgga  25562200  ===============HOX2a_HOX2a           <---------ANAC58             --------->ANAC58  ------>ZmHOX2a(2)                    <---------ANAC58             --------->ANAC58 ------->YAB1                      <------------CBF     <---------GLK1(1) -------HSFB2a(1)                 <---------ICU4        --------->GLK1(1)                     ------- ------>ICU4                      --------->ATHB12     --------->ARR14(2)                    <------- -->LBD16                        ------>ZmHOX2a(1)    =====================================HOX2a_HOX2a ->ANAC58                   <---------GLK1(1)         <------ZmHOX2a(1)              ------>ZmHOX2a(2) ->ANAC46                   <----------DOF2 ------>ZmHOX2a(1)       --------->ANAC46<---------GLK1(1) ->ANAC58 ------>ZmHOX2a(1)<---------ANAC58 ------------>CBF  --------->AtLEC2      --------->GLK1(1) -LBD16  --------->TOE2(3) <---------ANAC58--------->TOE2(3)<---------AtLEC2        <------ZmHOX2a(2) ------>KAN4(1)--------->ZAT14   <---------YAB1     <---------TOE1(3)              <---------ARR11(3) ------KAN4(2) <---------ZAT14  --------->TOE2(3)   <---------TOE2(3)              --------->ARR11(3)   atgatcgtcttcctcagtgttgtattttggctttcctcattgcttcctcaatctaaggatttccatgaacaaggaactaaaatgagatctcttctctttg  25562300                                                                      ------>MYB83                                                                      ------>MYB46(1)              <----------DOF2                                       <---------MYB59             <---------ANAC58                                   ----------->HVH21      <---------ATHB12                                      <---------ZAT2   --------->ZAT6                                           <---------At4g35610                   --- -------->AtSPL8                    <---------AtLEC2        --------->ZAT2                        --- ---DOF2     <---------ANAC58    <----------DOF2            --------->At4g35610                 -----   tactatcactcatttgcttttgctctcaaacagcactttcatggaagaaggaagagtttcgcagctgtgaccaaactccattttgtaaacgcgctcgatc  25562400            <-------MYC3            ------->MYC2            ------->MYC3            <-------MYC2           <------NtERF2           <---------ANAC46           <---------ANAC58                                       <---------HSFC1(2)           <---------ANAC58       <---------HSFC1(2)              <---------HSFB2a(1)          ------>NtERF2           --------->HSFC1(2)              --------->HSFB2a(1)         <---------ANAC46     <---------DEAR3(1)                  --------->HSFC1(2)        <------NtERF2        <------NtERF2             ------>ZmHOX2a(2)       --------->LBD16      <---------RAP2.3(1)       <------ZmHOX2a(2)       ------>NtERF2       <---------DEAR4(1)        <---------ARR14(2)      --------->ANAC46     --------->ETT(1)          <---------ARR14(3)      --------->LBD16      <---------RAP2.3(3)       --------->ARR11(3)     <---------LBD16       <---------At1g77200       --------->ARR14(2) --------->SPL7            <---------DEAR3(1)        --------->ARR14(3) ------>TOE1(1)            <---------DREB2C(2)       <---------ARR11(3)                 <---------ICU4 ------>TOE2(1)          <-----------HVH21          --------->GLK1(1)                  <---------ATHB12 ->ZmHOX2a(2)           <-----------RAV1(1)         <---------GLK1(1)       ---------->DOF2     -----   tcgtactcccggcgcgtgttctctaattgtcggcgatgtttccatcactgatggagatctcgtagcgaagcttctaccgaaagcgcctaatcaaggcgat  25562500                                                         <---------ANAC46                                                      <---------DEAR3(1)                                                      <---------RAP2.6(2)                  --------->DEAR3(1)                                                     --------->SPL7                      --------->LBD16                                                   <---------SPL7                       --------->ANAC46        ---------->DOF2                           ------>ZmHOX2a(2)                    --------->MYB46(3)       <------ZmHOX2a(2)                          =============================HOX2a_HOX2a<------NtERF2      --------->ARR11(3)                          <---------ANAC58                   ------->TEIL      --------->AGP1                             <---------------AtSPL3           --------->WRKY12     --------->At4g35610                        <---------ARR14(2)             <---------MYB46(3)  <------ZmHOX2a(2)   <----------DOF2           --------->ARR14(2)         <---------HSFB2a(1) ---->ALFIN1   <---------MYB52(1)  --------->ZAT14<---------ANAC58      <------ZmHOX2a(1)------>NtERF2   ggggatcagatcaagccgttgattctttctctctcagtttacaaggatgggatcgtgcggcttaaaatcgatgaggaccattcgttgaacccgccgaaga  25562600                                                            --------->DAG2                                                           ---------->DOF2                                                       --------->At4g35610                                                       <---------ZAT14                                                       <------NtERF2                                                 ------>ZmHOX2a(2)                                                --------->CCA1(2)                                                <------ZmHOX2a(2)                                               <---------ARR14(2)                                               <-----------ARR10                  --------->ALFIN1             <---------ARR11(3)                <---------bZIP60(2)            --------->AGP1             ------>ZmHOX2a(1)                 --------->ARR14(2)            --------------->AGL15              <---------AGP1            <---------------AGL15              --------->ARR11(3)                <---------LBD16           <-----------------AGL1              <---------ARR14(3)              ------>ZmHOX2a(2)           ----------------->AGL2              --------->ARR14(3)             <------ZmHOX2a(2)           ----------------->AGL1              --------->GLK1(2)              <---------GLK1(1)           <-----------------AG              ----------->ARR10               --------->ARR11(3)         <---------ARR14(2)           ==================HOX2a_HOX2a  <---------ANAC46         --------->ARR14(2)           =================HOX2a_HOX2a----------->HVH21  <---------ARR14(2)                  <------ZmHOX2a(1)<---------At4g35610   <---------ARR11(3)   agaggttccaagttcctgatgtggtagtgtctgagtttgaggagaagaagatctggctgcagaaagtagcgacggagacgatctctggagacactagtcc  25562700                                   <---------DEAR3(1)                                   <---------AtMYB61                                      <------NtERF2                                   --------->ALFIN1                                       <---------MYB52(1)                                  <------NtERF2                                           --------->ATERF1(1)                                  <---------ABI4(1)                                      <---------ATERF1(1)                                --------->ALFIN1 ------>ZmHOX2a(2)                       ------>NtERF2                                <---------DREB2C(2)                                      <-----------HVH21                                <---------DEAR3(1)         --------->ALFIN1    --------->ANAC55(2)                           <---------bZIP60(2) --------->ARR14(2)              --------->At4g35610                           <---------ANAC58  --------->ANAC58      <---------ANAC46     --------->DEAR3(1)                       <-------GAMYB<---------MYB46(3)  <---------TOE2(3)      <---------At4g35610                      <---------MYB46(3) ----------->RAV1(1)       <---------ANAC58     <---------DEAR3(1)                    <---------MYB52(1)  ----------->HVH21<---------ANAC46    <-----------RAV1(2)               <---------ARR14(2) <-------GAMYB<---------ARR14(2)  <---------ANAC58  ------>ZmHOX2a(2)               --------->ARR14(2)<---------DEAR4(2) <---------MYB52(1)    <---------GLK1(1)               ------->TEIL<---------ANAC58  --------->ANAC58 ------->TEIL--------->GLK1(1)  <-------            --------->ANAC55(2)<---------ABI4(1)<------ZmHOX2a(2) <-------TEIL <---------ANAC55(2)   gtcttcagtagtttatgtatccgatggttacgaggcggtggtgcgacacgatccgtttgaggtgtatgtgcgtgagaaatcaggtgatcgccgtcgcgtt  25562800  Previous    Next  AGI:  At5g63830.1    Description:  zinc finger (HIT type) family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO62942.1); contains InterPro domain Zinc finger, HIT-type (InterPro:IPR007529) Range:  from: 25560776    to: 25562028    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g63840.1    Description:  RSW3 (RADIAL SWELLING 3); hydrolase, hydrolyzing O-glycosyl compounds. similar to HGL1 (HETEROGLYCAN GLUCOSIDASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G23640.1); similar to HGL1 (HETEROGLYCAN GLUCOSIDASE 1) [Arabidopsis thaliana] (TAIR:AT3G23640.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62088.1); similar to alpha-glucosidase [Solanum tuberosum] (GB:CAA04707.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50067.1); contains InterPro domain Glycoside hydrolase, family 31; (InterPro:IPR000322) Range:  from: 25562282    to: 25566425    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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