Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->AtMYB61                                                    <---------ALFIN1                                                   --------->MYB46(3)                                                 --------->ANAC46                                                 --------->MYB55(1)                                                <---------MYB55(2)                                                --------->MYB46(3)                                             --------->GLK1(1)    <------ZmHOX2a(1)                        --------->CCA1(2)                     ---------->DOF2   <------MYB83                             --------->ARR14(2)                  <---------HSFC1(1)   ----------->GT1                          --------->ARR11(3)                  --------->HSFB2a(2)   <------MYB46(1)                          <---------ARR11(3)                  <---------HSFB2a(2)  ----------->GT1                           <---------ARR14(2)            <---------------AGL15    <-  --------->MYB59                         --------->ANAC58               ----------------->AGL1    -- <--------P                               --------->ANAC58          <---------AHL20(2)  ------->TEIL -------TOE2(3)                    ---------->DOF2------>MYB46(1)  <---------AHL20(2)  <---------GLK1(2) ->RAV1(1)                       ------>ZmHOX2a(1)------>MYB83     --------->AHL20(2)  --------->ARR14(2)   gaggtaggaaaattgtggaattgaagtttcaagtcctgaaagacaagatacccaccactccctcttcaatttaatccccattcgagaaagaacctcactg  25461300                                                                              --------->ZAT14                                                                             --------->ALFIN1                                                                             <---------ANAC46                                                                             <---------REM1(1)                                                --------->ARR14(1)        <---------DEAR3(1)                    ------>NtERF2               --------->CCA1(2)        <---------ABI4(1)             --------->ATHB12       ----------->GT1  --------->ALFIN1   --------->LBD16             <---------ICU4      ------>NtERF2 <---------ARR14(2)   <---------ARR14(2)            <---------YAB1      ----------->HVH21    <---------REM1(1)<---------LBD16       --------->YAB1     ----------->HVH21    --------->ARR14(2)   --------->GLK1(2)      <-------TEIL  --------->At4g35610      --------->LBD16        --------->ARR14(2) --------DEAR3(1)   <---------At4g35610    <---------LBD16         <---------GLK1(2)--------->ALFIN1 ---->ZmHOX2a(2)  <---------RAP2.6(2)    <-----------GT1  <------ZmHOX2a(1) <------NtERF2    --------   atcggcgattcatagtcattgccgctcactgactccgacggataaaccggatacggtgtaggaatactagaatccggcggtgtaggctggggattaccaa  25461400                                                                              <-------GAMYB                                                                              <---------MYB52(1)                                                <---------ZAT6             <---------LBD16                                        --------->LBD16                 --------->GLK1(1)                                       <---------LBD16         <---------ARR14(2)                   -                                   ----------->HVH21           --------->ARR14(2)          --------->ANAC58          --------->TOE2(3)   --------->GLK1(2)<---------TOE2(3)        <---------GLK1(1)  --------->ANAC58        --------->GLK1(2)    <---------GLK1(2) <---------TOE1(3)     <---------TOE2(3)  <---------REM1(1) --------->AG          ---------->DOF2<---------LBD16        --------->ANAC46--------->LBD16       --   aaacgtcgataatctcaacttccgatatagcgattctctcaccgggattagggttagaattcgacgatactgaggtttccggttgtatagatgaagcaat  25461500                                                                                                <----                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                           --------->ANAC58                                                                                     --------->RAP2.3(2)                                                                                     --------->RAP2.3(3)                                                                                     <---------ANAC46                                                                                     --------->DEAR3(1)                                                                                    --------->RAP2.3(1)                                                                                    --------->RRTF1(1)                                                                                    --------->ATERF1(1)                                                                                    <------NtERF2                                                                                    --------->DEAR4(2)                                                                                   ------>NtERF2-----                                                                                   <---------ATERF1(1)                                                                                   <---------RAP2.3(1)                                                                                  <---------DEAR3(1)                                                                                  --------->DEAR3(1)                                                                                 --------->RAP2.3(1)                                                                                 <---------ABI4(2)                      ------>MYB46(1)                                  --------->LBD16     --------->ANAC58                      -------->P                                     <---------LBD16--------->ORA47(2)              <---------GLK1(2)                              <------NtERF2      <---------ATERF1(1)        <---------ZAT14                                    <---------DEAR3(1) <-----------RAV1(2)        --------->ZAT14     <---------MYB52(1)           <-----------HVH21--------->GLK1(1)--------->ANAC46 --------->DOF2       ------>MYB83               <<<<<<<<<TBF1  <------ZmHOX2a(1)--------->ATERF1(1) ------->AtMYB61    --------->MYB46(3)  <-------TEIL<<<<<<<<<TBF1   --------->MYB52(1)------>NtERF2   accaaagctctgaacagaatcaccaactccgcttgttccagtttcatcttcttcttcttcgtcggaggagtaccggagttgcaggcgccgtctacgcatt  25461600      <------NtERF2      --------->RAP2.3(1)     ------>NtERF2     --------->LBD16     <---------ATERF1(1)    <---------ATERF1(2)    <---------DEAR3(1)    --------->DEAR3(1)    --------->ATERF1(2)                                                                             <   <---------LBD16            <<<<<<<<<MYB2                     *TSS                             ----   --------->ATERF1(1)  --------->ATHB12                     <---------DAG2                     ----- -------ARR10          --------->AHL20(1)                    <----------DOF2            --------->ANAC46 -----ARR14(2)         --------->AHL20(2)                   <---------ANAC58            --------->ANAC58 ----CCA1(2)           <---------AHL20(2)                   <---------ANAC58            --------->ANAC58 --->GLK1(1)           <---------YAB1                     <-----------GT1  --------->DAG2       ----- ---->ARR14(2)        --------->AHL20(2)          <-----------GT1         ---------->DOF2       -----   tcttcgccggcgaaatttagggaattttattggttttccctccaaaatcaattttctattttgcttttttttttgaaaaagtttgtttagaagccagaac  25461700                             ----------->GT1                           <---------ANAC58                           <---------ANAC58                           <---------ANAC46 ------------CBF          ------>NtERF2                                            <---------AHL20(2) -------->CBF            <---------PCF2       <------NtERF2                      --------->AHL20(2) ---->ANAC58          --------->ALFIN1<------------CBF                           <---------AHL20(2) ---->ANAC58     <------ZmHOX2a(1)  <---------AHL20(2)            ------->TEIL------->TEIL ---->ANAC46  <------ZmHOX2a(1)    --------->AHL20(2)         ------->TEIL------->TEIL              <   gcaattgggctcattaggaggaaaatggggcctgttataaaattgggccgagttttgttgtatgtatgtatatgtgtatgtatataaatttgggtttagt  25461800                ----------->GT1         ---------->DOF2        <-----------------AGL2    --------->ALFIN1       <---------At4g35610        ----------->TGA1                                                 <-       --------->At4g35610    <---------ANAC46                                                    <--       --------->ZAT2  <---------ARR11(3)           <----------DOF2                     <---------ARR14(2)       <---------ZAT2  --------->ARR11(3)        ------>NtERF2                          --------->ARR14(2)   ------>NtERF2<------MYB83 <---------LBD16     <------NtERF2                         <---------GLK1(1)   --------->LBD16     --------->AHL20(1)       --------->ANAC58             <---------GLK1(2)    --- <---------LBD16<------MYB46(1)   ----------->HVH21<----------DOF2        --------->HSFB2a(2)     *TSS ---------At5g28300    <---------AHL20(1)       --------->ANAC58    --------------->AtSPL8  ---------   tttgccgcgagctgaatttggtgaaaatatttgggggtgacgaaaagagcccgcctttgtgttctaatttttggtaccagaatttttgaaaatccccaaa  25461900                                                           --------->GLK1(2)                                                           <---------ARR14(2)                   -----      <-----------GT1                                      --------->ARR14(2)                 <------ --------AHL20(2)                                         <---------CCA1(2)               <----------DOF2 -------AHL20(2)                <---------TOE1(3)  <---------ARR14(2)               <---------ANAC58 ------>AHL20(2)   <---------ICU4     <-----------GT1  --------->LBD16              <---------ANAC58 >LBD16         --------->YAB1  <---------TOE2(3)  --------->ARR14(2)             <-----------GT1   tttttttgtttctcttcttcataatcgttgaattagggttttacaatttcgagtttccccaaatctgaaatttgagtttttttttttcttgacttttcac  25462000                                                                                    <------ZmHOX2a(1)                                                                         <---------DEAR3(1)                                                                   <---------ARR14(2)                                                                   --------->ARR14(2)        ----------->RAV1(2)                                   ----------->GT1    <------ZmHOX2a(1) <---------YAB1                                            --------->LBD16--------->LBD16 ---->ANAC55(2)<---------ANAC46 ------>NtERF2            <---------LBD16<---------LBD16     <-------- -----GT1  <-------GAMYB       <---------RAP2.6(2)      --------->MYB52(1)------>NtERF2    <---------TOE2(3)   gttttgattcgcctgttgtttgggtttgaaatggcgactgaaaccctagatgagaagacaccggaagtgaattctccggcgaaggaggaaattgatgttg  25462100                                           ------>NtERF2                                           --------->LBD16                                    <---------ARR14(2)                                    <---------GLK1(2)            <------ZmHOX2a(1)        <------ZmHOX2a(1)     --------->DAG2                  <------ZmHOX2a(1)     <------ZmHOX2a(1)       ---------->DOF2            --------->At4g35610                --------->ALFIN1 --------->LBD16       ---------->DOF2    --------->DEAR3(1)--------->ALFIN1              <---------- ---RAV1(1)   <------ZmHOX2a(1)     --------->ARR14(2)  <---------At4g35610  --------->At4g35610  ---   ttccgaaggaggagaaggaggtagagaaagaaaaagtggattcgccgagaattggcgaagcggaggaggagaagaaggaagatgaagaagagggtgaagc  25462200  Previous    Next  AGI:  At5g63540.1    Description:  similar to hypothetical protein OsJ_014026 [Oryza sativa (japonica cultivar-group)] (GB:EAZ30543.1); similar to OSJNBa0055C08.4 [Oryza sativa (japonica cultivar-group)] (GB:CAE02280.2); contains InterPro domain Region of unknown function DUF1767 (InterPro:IPR013894) Range:  from: 25458009    to: 25461664    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g63550.1    Description:  GTP binding / RNA binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68330.1); similar to Os01g0924900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045251.1); contains InterPro domain DEK C terminal (InterPro:IPR014876) Range:  from: 25461898    to: 25465398    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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