Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <---------ICU4                        <-----------HVH21               --------->ATHB12   <---------MYB46(3)                 ------>MYB83                          --------->ICU4     <---------AtMYB61                 ------>MYB46(1)                       <---------YAB1     --------->ALFIN1        <--               --------->AtMYB61                 <-------MYC3           <-----------RAV1(1)       ---     ---------->DOF2   <---------ZAT6            ------->MYC3    --------->YAB1                   --- --->At4g35610 <---------MYB59                <---------ALFIN1  <------ZmHOX2a(2)                 <--   tgaaatagaaagaagaaccaaaccagtgtcaaagtttcttccatgttcccacatgtaatgtttgcgatcacaaactgtggtcgaattggctcagacaaaa  25445900                                 <---------MYB59    --------------->AtSPL8    <-----------GT1 -------DAG2        --------->At4g35610 ------>TOE2(3)     --------->ZAT2 ------>MYB46(1)        <------ZmHOX2a(1)               --------->ANAC58 ------>TOE1(3)     <---------At4g35610              <----------DOF2                      --------->ANAC58 -------------AGL15 <---------ZAT2 ------>MYB83<-------TEIL                     <---------YAB1   ccttatcaagtacttcttctccagctctctgtttaccaaattcaaaagtttcattctttaggaagaacacatactagacattacaattggccaagccttg  25446000                                                   ----------->GT1                                                  <---------HSFB2a(2)                                                  --------->HSFB2a(2)                                                 ------>ZmHOX2a(2)                                                 ==================================HOX2a_HOX2a                                               <---------ARR14(2)                 --------->YAB1                <---------AGP1               <------ZmHOX2a(1)           --------->ARR11(3)                  --------->ARR14(2)          --------->ANAC46  --------->ARR11(3)                       <-----------------AGL1          --------->ANAC58     <----  <---------ARR11(3)                       <-----------GT1--------->YAB1   --------->ANAC58     <----   tgaagagctctaagaactagcatgaagagaagttttgagtttttttttcgatctggaaaatcaaaattcaactaaacaggaaacttacaagttgatcagg  25446100                                                              --------->ARR14(2)                                                              --------->GLK1(2)                                                             <---------ARR14(2)                                                             --------->ARR14(2)                 <---------YAB1                              <---------GLK1(2)               <---------GLK1(1)                           --------->LBD16                          <              --------->ARR11(3)                      --------->ZAT2                               --              <---------ARR11(3)                      --------->At4g35610                          <-       ---------->DOF2                                <---------At4g35610               --------->MYB52(1) <---------YAB1--------->GLK1(1)                      <---------ZAT2                --------->ANAC58- <---------ANAC55(2)                              --------->ANAC46          ---------->DOF2       <-- -----ICU4    <---------ARR14(2)     <---------ARR14(2)   --------->HSFB2a(2)       --------->ANAC58- --ZmHOX2a(1) --------->ARR14(2)     --------->ARR14(2)   <---------HSFB2a(2)     ---------->DOF2 ---   attacgagagaaagcagatatcattttggggcgagagagaattcgattgcagacgctgctccagaatcggttaacacatgaagcgaaagcaaacgatttt  25446200                                             --------->ATERF1(1)                                             <------NtERF2                                            <---------ORA47(2)                                            <---------RAP2.3(1)                                            <---------ERF1                                           <---------ATERF1(2)                                           <---------DEAR3(1)                                           --------->ATERF1(2)                                           <---------DREB2C(2)                                           <---------ANAC46                                           <---------RAP2.3(3)                                           <---------RAP2.3(2)                                           <---------RRTF1(2) <------NtERF2               <---------ARR14(3) ---------RAP2.6(3)          --------->ARR11(3)                     <---------ARR11(1) ------->ATERF1(2)           <---------ARR11(3) <-------GAMYB       <---------ARR14(2) --------ATERF1(2)           --------->ARR14(3)<---------MYB46(3)   --------->ARR14(2) ----->NtERF2              ----------->ARR10------>NtERF2  --------->ARR14(2) -------LBD16        <---------ANAC46      <---------RRTF1(3)       <---------ARR11(3) -------->LBD16 <-----------RAV1(1)        <---------RAP2.6(2)     <---------CCA1(2) ------>RAP2.6(3)  <---------ANAC46       --------->RAP2.6(3) --------->ANAC46      <----------DOF2<-   gccggcaatctcaagagaatgttgtggagaaggtcttcgttcatggcggcgattggaaccatatcagccatatctgtcttcatcttctttgagttctcgc  25446300               --------->At4g35610           <-----------TGA1           <-----------HVH21             --------->LBD16                                       <-----          <---------bZIP60(1)            ------>NtERF2                                        <------          --------->bZIP60(1)           --------->ANAC58                             --------->AHL20(2)          --------->ETT(2)              --------->ANAC46                             <---------AHL20(2)         ---------->ID1            --------->HSFC1(2)                               --------->AHL20(2)     <----------DOF2------>ZmHOX2a(1)   --------->ANAC58                            <---------AHL20(1)     <---------MYB52(1)<----------DOF2*TSS                                          <---------AHL20(2)  <-----------------AGL1  <-----------HVH21                                 <---------DEAR3(1)<------ ---------DOF2 <---------At4g35610 <---------HSFC1(2)                <-----------GT1--------->AHL20(1)   tctttccctttgtcgtcatctccttctttgtcagagacacttccgccatgagagttacaaattttcttatttttctcttcggcgaatttatttgggcctt  25446400                                                                  <---------CCA1(2)                                                               --------->LBD16                                                          ---------->DOF2                       <------------CBF                --------->TOE1(3)  <---------MYB46(3) <-------TEIL    ---------->DOF2   --------->TOE2(3)  ----------->GT1   <<<<<<<<<<<<<<<<<LFY               --------->YAB1 -----DOF2     ---------->DOF2     --------->YAB1     <---------YAB1 ----DOF2--------->AHL20(2)   <----------DOF2        --------->ARR11(3)                     <-------- ---DAG2 <---------AHL20(2)   <---------DAG2         <---------ARR11(3)               <---------WOX13(1)   ttgtttgttaaaaaaataaaagttacattgggctttatcaaaagaataggcccattatcttaaaccgcgtctctcttaaaatgcccagattgattttttt  25446500                       <---------MYB52(1)              ------>ZmHOX2a(1)              <---------------AGL15              <----------DOF2                                                               ---------             <-----------------AGL3      <---------ZAT6                             --------->ATHB12         --------->LBD16             <---------ZAT14     ------->TEIL              --------->ICU4 -AHL20(2)<---------MYB52(1)         --------->ZAT14  <---------YAB1               <---------YAB1----   ttcatacattccggtcctttaatcggttatctatttgtctgtactgttcgtaaactatgaatttgtagttgaaaattattcggacatcattgacaaaaga  25446600                                          <----------DOF2                                        <---------YAB1                                      <---------CCA1(2)                                  <---------ARR11(3)          --------------->AGL15                                  --------->ARR11(3)          <---------------AGL15   <-----------ARR10                              --------->ANAC58            <---------ZAT14             <---------ARR14(2)                              --------->ANAC58            --------->ZAT14             <---------ARR11(3)                            --------->CCA1(2)             <---------ZAT18             --------->ARR11(3)  ---------->DOF2        <---------TOE2(3)--------->TOE2(3) ------->TEIL              --------->ARR14(2) ->DOF2         --------->ANAC46 <---------GLK1(1)    <---------ALFIN1           ---------->DOF2 ------>DOF2  ----------->RAV1(1)--------->GLK1(1)<-----------HVH21     --------->CCA1(2)      <-----   aaagaaaagaagaaacccacaaaatttgagataagaaatcttatctttaatatgtcacactgtacttgttttggatatagacacaaagtatcttcttctt  25446700                      --------->AHL20(2)                 <---------AHL20(2)                 <---------AHL20(1)                 --------->AHL20(1)                 --------->AHL20(2)                --------->AHL20(2)           --------->GLK1(2)                <---------AHL20(2)     <----------ID1            --------->AHL20(2)       --------->MYB52(1)                             -------->ATHB1            <---------AHL20(2) ------>ZmHOX2a(1)          --------->TOE2(3)         --------->ATHB12          --------->TOE2(3)    --------->LBD16      <-----------GT1                 --------->ATHB51        <---------YAB1<---------AHL20(1)     --------->ARR11(3)                    <---------YAB1      --------->YAB1  <---------AHL20(2)     <---------ARR11(3)               <---------TOE2(3)     - -----DOF2<----------DOF2    <---------LBD16<---------GLK1(2)             --------->TOE2(3)        --   tttgtttatcatctttaattttattttattttcctgaaaaaacgaagaatctttttccaatctcaacattttgttacattaatgtattattgagtttttc  25446800  Previous    Next  AGI:  At5g63520.1    Description:  Identical to F-box/LRR-repeat protein At5g63520 [Arabidopsis Thaliana] (GB:Q9FMV0;GB:Q8GX97); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96301.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 25443403    to: 25446338    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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